Wall clock time and date at job start Tue Mar 31 2020 13:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86801 * 119.99820 * 2 1 4 4 H 1.48501 * 109.46743 * 269.99504 * 3 2 1 5 5 H 1.48495 * 109.47603 * 29.99867 * 3 2 1 6 6 H 1.48506 * 109.47089 * 150.00222 * 3 2 1 7 7 C 1.39939 * 120.00239 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99978 * 167.00598 * 7 2 1 9 9 C 1.41437 * 119.99713 * 347.00494 * 7 2 1 10 10 C 1.40783 * 120.17924 * 153.53461 * 9 7 2 11 11 C 1.37709 * 120.04287 * 179.74534 * 10 9 7 12 12 C 1.38373 * 120.41426 * 359.97438 * 11 10 9 13 13 C 1.39884 * 120.35380 * 359.97438 * 12 11 10 14 14 C 1.47890 * 120.02265 * 180.02562 * 13 12 11 15 15 O 1.21548 * 119.99938 * 179.97438 * 14 13 12 16 16 N 1.34777 * 120.00046 * 359.97438 * 14 13 12 17 17 C 1.46491 * 119.99988 * 185.32548 * 16 14 13 18 18 C 1.50700 * 112.93881 * 283.99564 * 17 16 14 19 19 C 1.38234 * 120.00153 * 345.80674 * 18 17 16 20 20 C 1.38238 * 120.00558 * 179.78712 * 19 18 17 21 21 C 1.38237 * 119.99328 * 0.44491 * 20 19 18 22 22 C 1.38234 * 120.00492 * 359.81002 * 21 20 19 23 23 C 1.38240 * 120.00066 * 166.08385 * 18 17 16 24 24 C 1.53937 * 113.73647 * 152.29178 * 17 16 14 25 25 N 1.47958 * 86.17805 * 269.36010 * 24 17 16 26 26 C 1.47960 * 90.76449 * 335.30811 * 25 24 17 27 27 C 1.39036 * 119.95202 * 0.05799 * 13 12 11 28 28 H 0.97001 * 120.00382 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.97366 * 359.72772 * 10 9 7 30 30 H 1.08003 * 119.79491 * 180.02562 * 11 10 9 31 31 H 1.07991 * 119.82288 * 179.97438 * 12 11 10 32 32 H 0.97007 * 119.99770 * 5.32704 * 16 14 13 33 33 H 1.08008 * 119.99733 * 0.02562 * 19 18 17 34 34 H 1.08001 * 120.00705 * 180.27765 * 20 19 18 35 35 H 1.07998 * 119.99967 * 179.83431 * 21 20 19 36 36 H 1.07998 * 120.00596 * 180.02562 * 22 21 20 37 37 H 1.07991 * 120.00231 * 359.97438 * 23 18 17 38 38 H 1.09001 * 113.75475 * 23.67588 * 24 17 16 39 39 H 1.08996 * 113.76208 * 155.04339 * 24 17 16 40 40 H 1.00905 * 111.00155 * 88.20040 * 25 24 17 41 41 H 1.08991 * 113.75877 * 270.37265 * 26 25 24 42 42 H 1.09006 * 113.76126 * 139.00815 * 26 25 24 43 43 H 1.07995 * 120.20431 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0463 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0672 -1.2239 -0.2097 9 6 1.3279 -2.4209 0.2765 10 6 1.8135 -3.6389 -0.2361 11 6 1.1521 -4.8151 0.0387 12 6 0.0091 -4.8104 0.8186 13 6 -0.4876 -3.6100 1.3375 14 6 -1.7095 -3.6135 2.1706 15 8 -2.1405 -2.5703 2.6217 16 7 -2.3452 -4.7733 2.4297 17 6 -3.6177 -4.7649 3.1555 18 6 -3.4487 -4.5306 4.6345 19 6 -2.1987 -4.6434 5.2139 20 6 -2.0429 -4.4241 6.5698 21 6 -3.1388 -4.1011 7.3481 22 6 -4.3897 -3.9934 6.7697 23 6 -4.5448 -4.2084 5.4130 24 6 -4.5331 -5.9547 2.8150 25 7 -5.1013 -5.0878 1.7591 26 6 -4.6952 -3.8773 2.5068 27 6 0.1679 -2.4137 1.0689 28 1 -0.4851 0.8400 -0.0004 29 1 2.7051 -3.6507 -0.8454 30 1 1.5283 -5.7473 -0.3562 31 1 -0.5022 -5.7383 1.0278 32 1 -1.9601 -5.6137 2.1356 33 1 -1.3431 -4.8991 4.6064 34 1 -1.0656 -4.5079 7.0217 35 1 -3.0176 -3.9324 8.4079 36 1 -5.2458 -3.7406 7.3776 37 1 -5.5220 -4.1242 4.9612 38 1 -3.9991 -6.8234 2.4298 39 1 -5.2405 -6.2049 3.6056 40 1 -4.5790 -5.1745 0.9001 41 1 -5.4499 -3.5200 3.2072 42 1 -4.2907 -3.0862 1.8753 43 1 -0.2123 -1.4846 1.4671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055125.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:50 Heat of formation + Delta-G solvation = 52.977294 kcal Electronic energy + Delta-G solvation = -26620.191080 eV Core-core repulsion = 23016.995585 eV Total energy + Delta-G solvation = -3603.195495 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.04565 -38.70959 -38.11013 -36.87324 -33.87609 -33.26995 -31.30917 -30.79379 -29.94455 -29.47892 -26.31329 -26.05329 -25.30812 -23.16771 -22.38881 -21.86181 -21.03214 -19.92686 -19.16216 -17.83807 -17.32676 -16.61263 -16.09318 -15.50403 -15.22440 -15.06129 -14.74290 -14.44111 -14.27748 -13.92123 -13.71132 -13.57148 -13.25072 -13.19895 -12.72149 -12.62410 -12.55142 -12.31594 -11.75668 -11.70335 -11.20215 -11.15120 -11.12284 -11.09576 -10.92089 -10.79411 -10.53913 -10.07884 -9.76880 -9.33237 -9.29465 -9.06469 -8.84160 -8.58188 -8.43073 -7.70562 -7.56045 -6.81110 -4.48173 1.38198 1.48070 2.11389 2.76312 3.05255 3.07585 3.11596 3.34598 3.71999 3.75120 3.88856 3.96332 4.51550 4.58762 4.72435 4.96007 5.03525 5.08015 5.14826 5.28974 5.50947 5.53707 5.54252 5.61514 5.70119 5.80102 5.91366 5.97816 5.99881 6.04541 6.11002 6.18905 6.49169 6.53792 6.58976 6.64336 6.81414 6.92462 6.94491 7.05567 7.16298 7.20583 7.31420 7.61845 7.66881 7.84836 7.98470 8.12378 8.44908 8.75365 8.77141 8.83955 10.12457 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013862 B = 0.003703 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.458925 B = 7558.621051 C = 8156.451141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.072 3.928 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.459 4.459 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.209 4.209 11 C -0.098 4.098 12 C -0.217 4.217 13 C -0.131 4.131 14 C 0.566 3.434 15 O -0.528 6.528 16 N -0.723 5.723 17 C 0.147 3.853 18 C -0.074 4.074 19 C -0.097 4.097 20 C -0.120 4.120 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.113 4.113 24 C 0.028 3.972 25 N -0.657 5.657 26 C 0.025 3.975 27 C -0.088 4.088 28 H 0.284 0.716 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.401 0.599 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.341 0.659 41 H 0.105 0.895 42 H 0.090 0.910 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.363 -9.381 8.563 14.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.229 4.229 11 C -0.117 4.117 12 C -0.237 4.237 13 C -0.134 4.134 14 C 0.357 3.643 15 O -0.404 6.404 16 N -0.378 5.378 17 C 0.058 3.942 18 C -0.076 4.076 19 C -0.115 4.115 20 C -0.138 4.138 21 C -0.143 4.143 22 C -0.140 4.140 23 C -0.131 4.131 24 C -0.103 4.103 25 N -0.283 5.283 26 C -0.105 4.105 27 C -0.108 4.108 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.238 0.762 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.097 0.903 39 H 0.127 0.873 40 H 0.156 0.844 41 H 0.123 0.877 42 H 0.108 0.892 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.747 -8.497 8.871 15.080 hybrid contribution 1.724 0.418 -0.233 1.789 sum -7.024 -8.079 8.638 13.756 Atomic orbital electron populations 1.69750 1.07484 1.29701 1.34357 1.25956 0.94851 1.01528 0.92343 0.86249 0.80491 0.80435 0.79248 1.19397 1.19958 1.18413 1.19599 0.96614 0.90510 1.42089 0.90119 1.17613 0.91400 0.92499 0.88911 1.21141 1.02864 0.93070 1.05799 1.20435 0.95760 0.96710 0.98771 1.20332 1.00579 0.94825 1.07984 1.19461 0.95925 0.95522 1.02506 1.18870 0.83744 0.82462 0.79185 1.90726 1.66797 1.31657 1.51251 1.45762 1.22355 1.10122 1.59528 1.21894 0.85738 0.97750 0.88806 1.19965 0.93774 0.99265 0.94594 1.21028 0.97061 0.98695 0.94726 1.21144 0.98694 0.99900 0.94047 1.21107 0.92994 1.00559 0.99644 1.21051 0.97334 1.00760 0.94865 1.20923 0.98244 1.00150 0.93775 1.24015 0.95073 0.94923 0.96292 1.65099 1.55020 1.03746 1.04463 1.24060 0.94512 0.94374 0.97544 1.21713 0.96058 0.96154 0.96854 0.90454 0.88568 0.88880 0.89366 0.76193 0.86239 0.86275 0.86404 0.86222 0.85983 0.90336 0.87276 0.84379 0.87676 0.89166 0.84540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.65 10.82 55.55 0.60 -20.04 16 2 C 0.07 1.79 5.22 -17.35 -0.09 1.70 16 3 Si 0.91 18.65 29.58 -169.99 -5.03 13.62 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.46 -11.89 9.06 -37.73 -0.34 -12.23 16 8 H 0.08 1.98 7.88 -52.49 -0.41 1.57 16 9 C 0.10 2.54 5.56 -106.87 -0.59 1.95 16 10 C -0.21 -4.84 9.78 -38.81 -0.38 -5.22 16 11 C -0.10 -2.03 10.01 -39.73 -0.40 -2.43 16 12 C -0.22 -4.34 9.55 -38.92 -0.37 -4.72 16 13 C -0.13 -2.95 5.87 -105.03 -0.62 -3.57 16 14 C 0.57 11.59 6.77 -12.31 -0.08 11.50 16 15 O -0.53 -12.50 14.78 5.32 0.08 -12.42 16 16 N -0.72 -11.10 4.08 -50.71 -0.21 -11.31 16 17 C 0.15 2.01 0.99 -134.68 -0.13 1.88 16 18 C -0.07 -1.05 5.01 -104.62 -0.52 -1.57 16 19 C -0.10 -1.45 9.18 -39.58 -0.36 -1.81 16 20 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 21 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 22 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 23 C -0.11 -1.41 8.76 -39.58 -0.35 -1.76 16 24 C 0.03 0.30 8.15 -2.77 -0.02 0.28 16 25 N -0.66 -8.21 8.55 -116.94 -1.00 -9.21 16 26 C 0.03 0.36 7.48 -2.77 -0.02 0.34 16 27 C -0.09 -2.28 8.22 -38.44 -0.32 -2.59 16 28 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 29 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 30 H 0.09 1.62 8.06 -52.48 -0.42 1.20 16 31 H 0.09 1.43 6.39 -52.49 -0.34 1.10 16 32 H 0.40 5.32 6.80 -40.82 -0.28 5.04 16 33 H 0.12 1.87 7.04 -52.48 -0.37 1.50 16 34 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.12 1.32 6.51 -52.49 -0.34 0.98 16 38 H 0.08 0.73 8.13 -51.93 -0.42 0.30 16 39 H 0.11 1.06 7.83 -51.93 -0.41 0.65 16 40 H 0.34 4.30 8.88 -39.29 -0.35 3.95 16 41 H 0.11 1.38 6.19 -51.93 -0.32 1.06 16 42 H 0.09 1.58 6.78 -51.93 -0.35 1.23 16 43 H 0.14 3.87 5.71 -52.49 -0.30 3.57 16 LS Contribution 355.61 15.07 5.36 5.36 Total: -1.00 -29.15 355.61 -11.13 -40.28 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -5.14 Total: 17.64 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -5.80 Total: -23.92 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: -0.61 Total: -40.57 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.08 Total: -12.42 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.15 -11.13 -40.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055125.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.260 kcal (2) G-P(sol) polarization free energy of solvation -29.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds