Wall clock time and date at job start Tue Mar 31 2020 13:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86801 * 119.99820 * 2 1 4 4 H 1.48501 * 109.46743 * 269.99504 * 3 2 1 5 5 H 1.48495 * 109.47603 * 29.99867 * 3 2 1 6 6 H 1.48506 * 109.47089 * 150.00222 * 3 2 1 7 7 C 1.39939 * 120.00239 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99978 * 167.00598 * 7 2 1 9 9 C 1.41437 * 119.99713 * 347.00494 * 7 2 1 10 10 C 1.40783 * 120.17924 * 153.53461 * 9 7 2 11 11 C 1.37709 * 120.04287 * 179.74534 * 10 9 7 12 12 C 1.38373 * 120.41426 * 359.97438 * 11 10 9 13 13 C 1.39884 * 120.35380 * 359.97438 * 12 11 10 14 14 C 1.47890 * 120.02265 * 180.02562 * 13 12 11 15 15 O 1.21548 * 119.99938 * 179.97438 * 14 13 12 16 16 N 1.34777 * 120.00046 * 359.97438 * 14 13 12 17 17 C 1.46491 * 119.99988 * 185.32548 * 16 14 13 18 18 C 1.50700 * 112.93881 * 283.99564 * 17 16 14 19 19 C 1.38234 * 120.00153 * 345.80674 * 18 17 16 20 20 C 1.38238 * 120.00558 * 179.78712 * 19 18 17 21 21 C 1.38237 * 119.99328 * 0.44491 * 20 19 18 22 22 C 1.38234 * 120.00492 * 359.81002 * 21 20 19 23 23 C 1.38240 * 120.00066 * 166.08385 * 18 17 16 24 24 C 1.53937 * 113.73647 * 152.29178 * 17 16 14 25 25 N 1.47958 * 86.17805 * 269.36010 * 24 17 16 26 26 C 1.47960 * 90.76449 * 335.30811 * 25 24 17 27 27 C 1.39036 * 119.95202 * 0.05799 * 13 12 11 28 28 H 0.97001 * 120.00382 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.97366 * 359.72772 * 10 9 7 30 30 H 1.08003 * 119.79491 * 180.02562 * 11 10 9 31 31 H 1.07991 * 119.82288 * 179.97438 * 12 11 10 32 32 H 0.97007 * 119.99770 * 5.32704 * 16 14 13 33 33 H 1.08008 * 119.99733 * 0.02562 * 19 18 17 34 34 H 1.08001 * 120.00705 * 180.27765 * 20 19 18 35 35 H 1.07998 * 119.99967 * 179.83431 * 21 20 19 36 36 H 1.07998 * 120.00596 * 180.02562 * 22 21 20 37 37 H 1.07991 * 120.00231 * 359.97438 * 23 18 17 38 38 H 1.09001 * 113.75475 * 23.67588 * 24 17 16 39 39 H 1.08996 * 113.76208 * 155.04339 * 24 17 16 40 40 H 1.00905 * 111.00155 * 88.20040 * 25 24 17 41 41 H 1.08991 * 113.75877 * 270.37265 * 26 25 24 42 42 H 1.09006 * 113.76126 * 139.00815 * 26 25 24 43 43 H 1.07995 * 120.20431 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0463 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0672 -1.2239 -0.2097 9 6 1.3279 -2.4209 0.2765 10 6 1.8135 -3.6389 -0.2361 11 6 1.1521 -4.8151 0.0387 12 6 0.0091 -4.8104 0.8186 13 6 -0.4876 -3.6100 1.3375 14 6 -1.7095 -3.6135 2.1706 15 8 -2.1405 -2.5703 2.6217 16 7 -2.3452 -4.7733 2.4297 17 6 -3.6177 -4.7649 3.1555 18 6 -3.4487 -4.5306 4.6345 19 6 -2.1987 -4.6434 5.2139 20 6 -2.0429 -4.4241 6.5698 21 6 -3.1388 -4.1011 7.3481 22 6 -4.3897 -3.9934 6.7697 23 6 -4.5448 -4.2084 5.4130 24 6 -4.5331 -5.9547 2.8150 25 7 -5.1013 -5.0878 1.7591 26 6 -4.6952 -3.8773 2.5068 27 6 0.1679 -2.4137 1.0689 28 1 -0.4851 0.8400 -0.0004 29 1 2.7051 -3.6507 -0.8454 30 1 1.5283 -5.7473 -0.3562 31 1 -0.5022 -5.7383 1.0278 32 1 -1.9601 -5.6137 2.1356 33 1 -1.3431 -4.8991 4.6064 34 1 -1.0656 -4.5079 7.0217 35 1 -3.0176 -3.9324 8.4079 36 1 -5.2458 -3.7406 7.3776 37 1 -5.5220 -4.1242 4.9612 38 1 -3.9991 -6.8234 2.4298 39 1 -5.2405 -6.2049 3.6056 40 1 -4.5790 -5.1745 0.9001 41 1 -5.4499 -3.5200 3.2072 42 1 -4.2907 -3.0862 1.8753 43 1 -0.2123 -1.4846 1.4671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055125.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:49 Heat of formation + Delta-G solvation = 34.346680 kcal Electronic energy + Delta-G solvation = -26620.998964 eV Core-core repulsion = 23016.995585 eV Total energy + Delta-G solvation = -3604.003379 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.22492 -40.18382 -39.21863 -38.56536 -35.66754 -34.72280 -32.48181 -31.87396 -31.50257 -31.25126 -27.50707 -27.20997 -26.95036 -24.61498 -23.52843 -22.87926 -22.80689 -21.44233 -20.44907 -19.56643 -18.40310 -17.94459 -17.50883 -17.02019 -16.57025 -16.41831 -16.24567 -15.74588 -15.52390 -15.28204 -14.95197 -14.83771 -14.81439 -14.35739 -14.28210 -14.25769 -13.62312 -13.50702 -13.32487 -12.94968 -12.80054 -12.75431 -12.57647 -12.25517 -12.22634 -12.05016 -11.89859 -11.88246 -11.54223 -11.11979 -10.87305 -10.50530 -9.82804 -9.63118 -9.58351 -9.42769 -9.38605 -8.65128 -6.42338 0.34819 0.40251 0.49063 0.98967 1.34495 1.44068 1.49792 2.01458 2.06763 2.17719 2.75566 2.77369 2.91845 3.45444 3.65371 3.71435 3.90852 4.00299 4.12688 4.17216 4.25133 4.37928 4.39707 4.55356 4.56711 4.62212 4.66531 4.73732 4.86147 4.89544 4.93413 5.06141 5.06911 5.13673 5.16343 5.29540 5.35072 5.49635 5.55211 5.60362 5.71383 5.83355 5.89140 6.03846 6.10016 6.17428 6.26283 6.45818 6.63633 6.86387 6.92206 7.28116 8.30117 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013862 B = 0.003703 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.458925 B = 7558.621051 C = 8156.451141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.028 3.972 3 Si 0.982 3.018 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.498 4.498 8 H 0.083 0.917 9 C 0.066 3.934 10 C -0.214 4.214 11 C -0.097 4.097 12 C -0.194 4.194 13 C -0.140 4.140 14 C 0.569 3.431 15 O -0.568 6.568 16 N -0.699 5.699 17 C 0.140 3.860 18 C -0.089 4.089 19 C -0.124 4.124 20 C -0.134 4.134 21 C -0.127 4.127 22 C -0.121 4.121 23 C -0.119 4.119 24 C 0.045 3.955 25 N -0.653 5.653 26 C 0.022 3.978 27 C -0.126 4.126 28 H 0.285 0.715 29 H 0.108 0.892 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.414 0.586 33 H 0.103 0.897 34 H 0.129 0.871 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.140 0.860 38 H 0.103 0.897 39 H 0.128 0.872 40 H 0.340 0.660 41 H 0.117 0.883 42 H 0.050 0.950 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.233 -11.995 9.461 17.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.186 4.186 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.528 4.528 8 H 0.101 0.899 9 C 0.064 3.936 10 C -0.234 4.234 11 C -0.115 4.115 12 C -0.214 4.214 13 C -0.144 4.144 14 C 0.359 3.641 15 O -0.448 6.448 16 N -0.353 5.353 17 C 0.051 3.949 18 C -0.091 4.091 19 C -0.142 4.142 20 C -0.152 4.152 21 C -0.145 4.145 22 C -0.139 4.139 23 C -0.137 4.137 24 C -0.085 4.085 25 N -0.280 5.280 26 C -0.108 4.108 27 C -0.147 4.147 28 H 0.095 0.905 29 H 0.126 0.874 30 H 0.156 0.844 31 H 0.154 0.846 32 H 0.253 0.747 33 H 0.121 0.879 34 H 0.147 0.853 35 H 0.162 0.838 36 H 0.168 0.832 37 H 0.157 0.843 38 H 0.121 0.879 39 H 0.146 0.854 40 H 0.155 0.845 41 H 0.135 0.865 42 H 0.069 0.931 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.621 -11.182 9.765 17.690 hybrid contribution 1.923 1.008 -0.442 2.215 sum -7.698 -10.174 9.322 15.801 Atomic orbital electron populations 1.69868 1.09099 1.30370 1.36296 1.26821 0.95477 1.04845 0.91423 0.85200 0.79027 0.75838 0.79682 1.18179 1.19822 1.17830 1.19874 0.96925 0.91694 1.44281 0.89919 1.17947 0.92018 0.93873 0.89737 1.21444 1.03331 0.93187 1.05459 1.20924 0.95216 0.97501 0.97871 1.20860 0.99817 0.95469 1.05226 1.19788 0.96505 0.95528 1.02539 1.18624 0.83383 0.83260 0.78868 1.90704 1.67692 1.33529 1.52847 1.45458 1.22571 1.08916 1.58372 1.22175 0.84641 0.99507 0.88547 1.20066 0.94155 1.00154 0.94743 1.21054 0.96974 1.00649 0.95572 1.21381 0.99951 1.00088 0.93756 1.21465 0.92636 0.99498 1.00931 1.21462 0.98277 0.99327 0.94804 1.21183 0.98486 0.99741 0.94327 1.24128 0.94217 0.94277 0.95908 1.65126 1.55013 1.03108 1.04736 1.24021 0.95193 0.94071 0.97520 1.21495 0.97768 0.96293 0.99129 0.90472 0.87413 0.84374 0.84582 0.74685 0.87924 0.85324 0.83761 0.83220 0.84262 0.87908 0.85369 0.84500 0.86460 0.93091 0.88172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.58 10.82 21.82 0.24 -46.34 16 2 C 0.03 1.49 5.22 85.26 0.45 1.94 16 3 Si 0.98 39.94 29.58 68.60 2.03 41.96 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 7 C -0.50 -27.19 9.06 23.47 0.21 -26.98 16 8 H 0.08 4.26 7.88 -2.91 -0.02 4.24 16 9 C 0.07 3.59 5.56 -21.32 -0.12 3.47 16 10 C -0.21 -9.90 9.78 22.77 0.22 -9.68 16 11 C -0.10 -3.75 10.01 22.18 0.22 -3.52 16 12 C -0.19 -7.32 9.55 22.70 0.22 -7.11 16 13 C -0.14 -6.44 5.87 -20.13 -0.12 -6.56 16 14 C 0.57 23.83 6.77 86.80 0.59 24.42 16 15 O -0.57 -28.47 14.78 -3.87 -0.06 -28.52 16 16 N -0.70 -20.81 4.08 -432.63 -1.77 -22.58 16 17 C 0.14 3.65 0.99 4.43 0.00 3.65 16 18 C -0.09 -2.44 5.01 -19.86 -0.10 -2.54 16 19 C -0.12 -3.68 9.18 22.27 0.20 -3.48 16 20 C -0.13 -3.46 10.05 22.27 0.22 -3.23 16 21 C -0.13 -2.75 10.05 22.27 0.22 -2.53 16 22 C -0.12 -2.48 10.05 22.27 0.22 -2.26 16 23 C -0.12 -2.75 8.76 22.27 0.19 -2.56 16 24 C 0.04 0.82 8.15 86.41 0.70 1.53 16 25 N -0.65 -15.07 8.55 -523.89 -4.48 -19.55 16 26 C 0.02 0.64 7.48 86.40 0.65 1.28 16 27 C -0.13 -6.95 8.22 23.01 0.19 -6.76 16 28 H 0.28 14.80 8.30 -92.71 -0.77 14.03 16 29 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 30 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 31 H 0.14 3.79 6.39 -2.92 -0.02 3.77 16 32 H 0.41 9.86 6.80 -92.70 -0.63 9.23 16 33 H 0.10 3.27 7.04 -2.91 -0.02 3.25 16 34 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 35 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 36 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 37 H 0.14 2.64 6.51 -2.92 -0.02 2.62 16 38 H 0.10 1.45 8.13 -2.39 -0.02 1.43 16 39 H 0.13 1.98 7.83 -2.39 -0.02 1.96 16 40 H 0.34 7.98 8.88 -89.69 -0.80 7.18 16 41 H 0.12 2.98 6.19 -2.39 -0.01 2.97 16 42 H 0.05 1.87 6.78 -2.38 -0.02 1.85 16 43 H 0.10 6.20 5.71 -2.91 -0.02 6.18 16 Total: -1.00 -69.75 355.61 -0.21 -69.96 By element: Atomic # 1 Polarization: 46.33 SS G_CDS: -0.36 Total: 45.97 kcal Atomic # 6 Polarization: -45.08 SS G_CDS: 4.19 Total: -40.90 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -6.01 Total: -88.48 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.06 Total: -28.52 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.96 kcal Total: -69.75 -0.21 -69.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055125.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.307 kcal (2) G-P(sol) polarization free energy of solvation -69.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds