Wall clock time and date at job start Tue Mar 31 2020 13:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30651 * 1 3 3 Si 1.86804 * 119.99658 * 2 1 4 4 H 1.48501 * 109.46798 * 240.00075 * 3 2 1 5 5 H 1.48500 * 109.47131 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47049 * 120.00421 * 3 2 1 7 7 C 1.40224 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00234 * 160.82075 * 7 2 1 9 9 C 1.41108 * 119.99819 * 341.09277 * 7 2 1 10 10 C 1.40884 * 120.10325 * 334.67743 * 9 7 2 11 11 C 1.36325 * 119.88872 * 179.69253 * 10 9 7 12 12 C 1.40014 * 120.10349 * 0.60401 * 11 10 9 13 13 C 1.47641 * 119.89065 * 179.69718 * 12 11 10 14 14 O 1.21590 * 120.00013 * 326.22981 * 13 12 11 15 15 N 1.34774 * 120.00191 * 146.23528 * 13 12 11 16 16 C 1.47240 * 121.34462 * 354.92304 * 15 13 12 17 17 C 1.52782 * 107.91076 * 115.81047 * 16 15 13 18 18 C 1.50610 * 110.86763 * 47.46383 * 17 16 15 19 19 C 1.39045 * 117.59081 * 159.94502 * 18 17 16 20 20 C 1.37953 * 120.74614 * 179.51474 * 19 18 17 21 21 C 1.38131 * 119.90673 * 359.93838 * 20 19 18 22 22 C 1.38640 * 119.63587 * 0.24255 * 21 20 19 23 23 N 1.39681 * 119.82614 * 180.02562 * 22 21 20 24 24 C 1.37533 * 122.85153 * 339.85399 * 18 17 16 25 25 C 1.46690 * 121.34952 * 174.63649 * 15 13 12 26 26 C 1.40006 * 120.21095 * 359.67066 * 12 11 10 27 27 C 1.36315 * 120.11061 * 0.02562 * 26 12 11 28 28 H 0.96994 * 119.99576 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.05904 * 359.97438 * 10 9 7 30 30 H 1.07995 * 119.94591 * 180.29785 * 11 10 9 31 31 H 1.09000 * 109.76909 * 235.41364 * 16 15 13 32 32 H 1.09002 * 109.77312 * 356.20657 * 16 15 13 33 33 H 1.08996 * 109.19577 * 167.82425 * 17 16 15 34 34 H 1.08998 * 109.19385 * 287.11101 * 17 16 15 35 35 H 1.07996 * 119.62907 * 359.50427 * 19 18 17 36 36 H 1.07999 * 120.04890 * 179.97438 * 20 19 18 37 37 H 1.08002 * 120.18338 * 180.23050 * 21 20 19 38 38 H 0.96996 * 119.99243 * 180.02562 * 23 22 21 39 39 H 0.96994 * 119.99907 * 0.02562 * 23 22 21 40 40 H 1.09000 * 109.43175 * 344.44583 * 25 15 13 41 41 H 1.08997 * 109.43268 * 104.31210 * 25 15 13 42 42 H 1.08009 * 119.94496 * 180.02562 * 26 12 11 43 43 H 1.07994 * 120.05486 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0941 1.6965 -1.2125 5 1 1.2754 2.7465 0.0006 6 1 3.0943 1.6965 1.2125 7 6 2.0077 -1.2143 -0.0005 8 1 3.0427 -1.2402 -0.3078 9 6 1.3592 -2.4036 0.3949 10 6 0.2524 -2.3492 1.2649 11 6 -0.3746 -3.5004 1.6392 12 6 0.0875 -4.7362 1.1704 13 6 -0.5911 -5.9804 1.5841 14 8 -1.0775 -6.0672 2.6950 15 7 -0.6712 -7.0202 0.7303 16 6 -0.1914 -6.9105 -0.6574 17 6 0.9785 -7.8782 -0.8279 18 6 0.6393 -9.2341 -0.2669 19 6 1.3902 -10.3189 -0.7059 20 6 1.1417 -11.5886 -0.2271 21 6 0.1379 -11.7909 0.6999 22 6 -0.6170 -10.7141 1.1390 23 7 -1.6327 -10.9140 2.0768 24 6 -0.3675 -9.4320 0.6490 25 6 -1.2343 -8.3088 1.1477 26 6 1.1906 -4.7956 0.3103 27 6 1.8203 -3.6495 -0.0744 28 1 -0.4849 0.8400 0.0004 29 1 -0.1015 -1.3969 1.6311 30 1 -1.2261 -3.4594 2.3022 31 1 -0.9930 -7.1759 -1.3467 32 1 0.1416 -5.8912 -0.8529 33 1 1.2104 -7.9768 -1.8884 34 1 1.8499 -7.4823 -0.3065 35 1 2.1766 -10.1659 -1.4300 36 1 1.7316 -12.4233 -0.5762 37 1 -0.0580 -12.7825 1.0805 38 1 -2.1625 -10.1625 2.3854 39 1 -1.8081 -11.8044 2.4194 40 1 -1.2856 -8.3467 2.2359 41 1 -2.2368 -8.4176 0.7340 42 1 1.5432 -5.7512 -0.0491 43 1 2.6714 -3.6964 -0.7376 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:35 Heat of formation + Delta-G solvation = 17.209542 kcal Electronic energy + Delta-G solvation = -26259.074770 eV Core-core repulsion = 22654.328269 eV Total energy + Delta-G solvation = -3604.746501 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.46003 -38.93121 -37.12981 -36.03120 -34.80146 -33.91388 -31.64784 -31.22260 -30.00182 -29.34059 -28.17889 -26.48876 -25.00721 -23.69246 -21.89305 -21.64699 -21.15686 -20.32783 -18.54232 -17.65540 -17.22595 -16.78845 -16.15177 -15.93780 -15.39407 -15.20529 -15.09009 -14.37197 -14.05770 -13.99263 -13.77970 -13.50629 -13.31943 -13.01833 -12.72916 -12.46968 -12.19051 -12.09293 -11.92540 -11.89047 -11.61086 -11.38674 -11.20435 -11.10852 -10.99075 -10.76088 -10.50577 -10.44776 -10.04117 -9.51710 -9.31922 -8.98546 -8.55951 -8.30648 -7.68356 -7.53763 -7.51480 -7.01596 -4.58412 1.39258 1.59604 2.28555 2.92444 2.95852 2.98193 3.02012 3.45429 3.72369 3.76714 3.79035 3.81531 4.49183 4.72294 4.76724 4.99166 5.17928 5.26122 5.38068 5.43308 5.50218 5.54447 5.62951 5.73089 5.82999 5.86853 5.94704 5.96139 6.14725 6.23739 6.26003 6.29851 6.51853 6.69998 6.79060 6.82842 6.84477 6.94216 7.05834 7.11664 7.39816 7.44100 7.60390 7.63442 7.78011 7.86468 8.03189 8.11913 8.42774 8.64381 8.75915 8.95847 9.91263 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.027777 B = 0.002827 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.781389 B = 9903.419566 C =10647.771246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.076 3.924 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.447 4.447 8 H 0.084 0.916 9 C 0.128 3.872 10 C -0.179 4.179 11 C -0.039 4.039 12 C -0.279 4.279 13 C 0.580 3.420 14 O -0.568 6.568 15 N -0.616 5.616 16 C 0.092 3.908 17 C -0.104 4.104 18 C -0.018 4.018 19 C -0.180 4.180 20 C -0.073 4.073 21 C -0.207 4.207 22 C 0.223 3.777 23 N -0.878 5.878 24 C -0.166 4.166 25 C 0.163 3.837 26 C -0.063 4.063 27 C -0.234 4.234 28 H 0.287 0.713 29 H 0.118 0.882 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.122 0.878 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.399 0.601 39 H 0.397 0.603 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.105 0.895 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.534 -15.743 -2.741 15.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.475 4.475 8 H 0.102 0.898 9 C 0.125 3.875 10 C -0.199 4.199 11 C -0.059 4.059 12 C -0.283 4.283 13 C 0.376 3.624 14 O -0.449 6.449 15 N -0.349 5.349 16 C -0.031 4.031 17 C -0.141 4.141 18 C -0.019 4.019 19 C -0.200 4.200 20 C -0.092 4.092 21 C -0.230 4.230 22 C 0.118 3.882 23 N -0.418 5.418 24 C -0.171 4.171 25 C 0.040 3.960 26 C -0.082 4.082 27 C -0.254 4.254 28 H 0.098 0.902 29 H 0.136 0.864 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.140 0.860 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.228 0.772 39 H 0.225 0.775 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.123 0.877 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.002 -15.589 -2.183 15.773 hybrid contribution 0.067 0.468 0.133 0.491 sum -0.935 -15.121 -2.050 15.288 Atomic orbital electron populations 1.69741 1.07917 1.30195 1.31546 1.26078 0.94765 1.01816 0.91906 0.86297 0.80248 0.79617 0.80305 1.18700 1.20085 1.18488 1.19774 0.98790 0.91359 1.37531 0.89806 1.17752 0.90219 0.92122 0.87376 1.20947 1.00277 0.96874 1.01761 1.20393 0.97522 0.91567 0.96375 1.18807 1.04649 0.91532 1.13299 1.18715 0.77608 0.82836 0.83237 1.90636 1.50110 1.82674 1.21480 1.47856 1.63495 1.11314 1.12242 1.22202 0.95748 1.02552 0.82593 1.20965 0.99696 0.92055 1.01413 1.19293 0.93453 0.95132 0.94052 1.20918 1.02489 0.92395 1.04236 1.20732 0.96144 0.96778 0.95517 1.20422 1.00945 0.97266 1.04411 1.17639 0.88713 0.92753 0.89144 1.42562 1.38661 1.12499 1.48068 1.19262 1.01670 0.93102 1.03046 1.19874 0.94502 0.81207 1.00439 1.20714 0.94886 0.97370 0.95200 1.20697 1.04608 0.92722 1.07362 0.90164 0.86407 0.88670 0.91666 0.86038 0.89521 0.89592 0.86457 0.86366 0.86471 0.77159 0.77545 0.89262 0.91797 0.87713 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.67 11.07 55.56 0.61 -18.05 16 2 C 0.08 1.77 5.10 -17.31 -0.09 1.69 16 3 Si 0.91 17.34 29.60 -169.99 -5.03 12.31 16 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 5 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 7 C -0.45 -11.01 9.03 -37.75 -0.34 -11.35 16 8 H 0.08 1.96 7.92 -52.48 -0.42 1.54 16 9 C 0.13 3.22 5.56 -106.80 -0.59 2.63 16 10 C -0.18 -4.53 8.63 -39.27 -0.34 -4.87 16 11 C -0.04 -0.95 9.53 -39.61 -0.38 -1.33 16 12 C -0.28 -6.33 5.42 -104.73 -0.57 -6.90 16 13 C 0.58 12.59 7.41 -12.42 -0.09 12.49 16 14 O -0.57 -13.76 16.35 5.29 0.09 -13.67 16 15 N -0.62 -10.83 2.94 -175.81 -0.52 -11.35 16 16 C 0.09 1.37 5.55 -3.75 -0.02 1.35 16 17 C -0.10 -1.34 5.50 -28.04 -0.15 -1.49 16 18 C -0.02 -0.25 5.76 -104.62 -0.60 -0.85 16 19 C -0.18 -2.12 9.58 -39.39 -0.38 -2.49 16 20 C -0.07 -0.78 10.04 -39.73 -0.40 -1.18 16 21 C -0.21 -2.26 9.89 -39.47 -0.39 -2.65 16 22 C 0.22 2.68 6.72 -83.66 -0.56 2.12 16 23 N -0.88 -8.24 8.98 32.48 0.29 -7.94 16 24 C -0.17 -2.30 5.82 -104.56 -0.61 -2.91 16 25 C 0.16 2.48 5.12 -5.24 -0.03 2.45 16 26 C -0.06 -1.33 7.30 -39.61 -0.29 -1.62 16 27 C -0.23 -5.31 9.73 -39.27 -0.38 -5.69 16 28 H 0.29 6.30 8.29 -40.82 -0.34 5.96 16 29 H 0.12 3.05 6.25 -52.49 -0.33 2.72 16 30 H 0.10 2.26 7.97 -52.49 -0.42 1.84 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.12 2.00 4.20 -51.93 -0.22 1.78 16 33 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 34 H 0.09 1.17 6.62 -51.93 -0.34 0.83 16 35 H 0.12 1.16 8.05 -52.49 -0.42 0.74 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.40 3.69 7.03 -40.82 -0.29 3.40 16 39 H 0.40 2.72 8.83 -40.82 -0.36 2.36 16 40 H 0.09 1.44 6.47 -51.93 -0.34 1.11 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.11 1.87 3.99 -52.48 -0.21 1.66 16 43 H 0.10 2.03 8.06 -52.49 -0.42 1.60 16 LS Contribution 346.16 15.07 5.22 5.22 Total: -1.00 -29.25 346.16 -10.56 -39.81 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -5.01 Total: 14.29 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -6.21 Total: -20.61 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.39 Total: -37.35 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.09 Total: -13.67 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.25 -10.56 -39.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.019 kcal (2) G-P(sol) polarization free energy of solvation -29.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds