Wall clock time and date at job start Tue Mar 31 2020 13:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30651 * 1 3 3 Si 1.86804 * 119.99658 * 2 1 4 4 H 1.48501 * 109.46798 * 240.00075 * 3 2 1 5 5 H 1.48500 * 109.47131 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47049 * 120.00421 * 3 2 1 7 7 C 1.40224 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00234 * 160.82075 * 7 2 1 9 9 C 1.41108 * 119.99819 * 341.09277 * 7 2 1 10 10 C 1.40884 * 120.10325 * 334.67743 * 9 7 2 11 11 C 1.36325 * 119.88872 * 179.69253 * 10 9 7 12 12 C 1.40014 * 120.10349 * 0.60401 * 11 10 9 13 13 C 1.47641 * 119.89065 * 179.69718 * 12 11 10 14 14 O 1.21590 * 120.00013 * 326.22981 * 13 12 11 15 15 N 1.34774 * 120.00191 * 146.23528 * 13 12 11 16 16 C 1.47240 * 121.34462 * 354.92304 * 15 13 12 17 17 C 1.52782 * 107.91076 * 115.81047 * 16 15 13 18 18 C 1.50610 * 110.86763 * 47.46383 * 17 16 15 19 19 C 1.39045 * 117.59081 * 159.94502 * 18 17 16 20 20 C 1.37953 * 120.74614 * 179.51474 * 19 18 17 21 21 C 1.38131 * 119.90673 * 359.93838 * 20 19 18 22 22 C 1.38640 * 119.63587 * 0.24255 * 21 20 19 23 23 N 1.39681 * 119.82614 * 180.02562 * 22 21 20 24 24 C 1.37533 * 122.85153 * 339.85399 * 18 17 16 25 25 C 1.46690 * 121.34952 * 174.63649 * 15 13 12 26 26 C 1.40006 * 120.21095 * 359.67066 * 12 11 10 27 27 C 1.36315 * 120.11061 * 0.02562 * 26 12 11 28 28 H 0.96994 * 119.99576 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.05904 * 359.97438 * 10 9 7 30 30 H 1.07995 * 119.94591 * 180.29785 * 11 10 9 31 31 H 1.09000 * 109.76909 * 235.41364 * 16 15 13 32 32 H 1.09002 * 109.77312 * 356.20657 * 16 15 13 33 33 H 1.08996 * 109.19577 * 167.82425 * 17 16 15 34 34 H 1.08998 * 109.19385 * 287.11101 * 17 16 15 35 35 H 1.07996 * 119.62907 * 359.50427 * 19 18 17 36 36 H 1.07999 * 120.04890 * 179.97438 * 20 19 18 37 37 H 1.08002 * 120.18338 * 180.23050 * 21 20 19 38 38 H 0.96996 * 119.99243 * 180.02562 * 23 22 21 39 39 H 0.96994 * 119.99907 * 0.02562 * 23 22 21 40 40 H 1.09000 * 109.43175 * 344.44583 * 25 15 13 41 41 H 1.08997 * 109.43268 * 104.31210 * 25 15 13 42 42 H 1.08009 * 119.94496 * 180.02562 * 26 12 11 43 43 H 1.07994 * 120.05486 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0941 1.6965 -1.2125 5 1 1.2754 2.7465 0.0006 6 1 3.0943 1.6965 1.2125 7 6 2.0077 -1.2143 -0.0005 8 1 3.0427 -1.2402 -0.3078 9 6 1.3592 -2.4036 0.3949 10 6 0.2524 -2.3492 1.2649 11 6 -0.3746 -3.5004 1.6392 12 6 0.0875 -4.7362 1.1704 13 6 -0.5911 -5.9804 1.5841 14 8 -1.0775 -6.0672 2.6950 15 7 -0.6712 -7.0202 0.7303 16 6 -0.1914 -6.9105 -0.6574 17 6 0.9785 -7.8782 -0.8279 18 6 0.6393 -9.2341 -0.2669 19 6 1.3902 -10.3189 -0.7059 20 6 1.1417 -11.5886 -0.2271 21 6 0.1379 -11.7909 0.6999 22 6 -0.6170 -10.7141 1.1390 23 7 -1.6327 -10.9140 2.0768 24 6 -0.3675 -9.4320 0.6490 25 6 -1.2343 -8.3088 1.1477 26 6 1.1906 -4.7956 0.3103 27 6 1.8203 -3.6495 -0.0744 28 1 -0.4849 0.8400 0.0004 29 1 -0.1015 -1.3969 1.6311 30 1 -1.2261 -3.4594 2.3022 31 1 -0.9930 -7.1759 -1.3467 32 1 0.1416 -5.8912 -0.8529 33 1 1.2104 -7.9768 -1.8884 34 1 1.8499 -7.4823 -0.3065 35 1 2.1766 -10.1659 -1.4300 36 1 1.7316 -12.4233 -0.5762 37 1 -0.0580 -12.7825 1.0805 38 1 -2.1625 -10.1625 2.3854 39 1 -1.8081 -11.8044 2.4194 40 1 -1.2856 -8.3467 2.2359 41 1 -2.2368 -8.4176 0.7340 42 1 1.5432 -5.7512 -0.0491 43 1 2.6714 -3.6964 -0.7376 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:35 Heat of formation + Delta-G solvation = 1.503017 kcal Electronic energy + Delta-G solvation = -26259.755856 eV Core-core repulsion = 22654.328269 eV Total energy + Delta-G solvation = -3605.427587 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.69034 -40.28017 -38.88171 -37.33754 -35.74793 -35.66913 -32.84115 -32.48016 -31.78072 -30.92831 -29.11799 -28.06998 -26.42100 -24.79269 -23.50699 -23.01342 -22.45571 -21.70405 -19.90522 -19.43807 -18.43369 -17.85283 -17.39744 -17.22792 -17.02056 -16.47326 -16.18809 -15.93093 -15.45363 -15.22519 -15.00586 -14.79731 -14.62530 -14.39941 -14.26729 -13.78450 -13.71749 -13.58722 -13.37592 -13.03698 -12.94214 -12.82407 -12.75761 -12.51900 -12.26894 -12.10571 -11.77349 -11.72641 -11.36616 -11.26598 -11.08252 -10.70421 -9.77214 -9.52414 -9.48277 -9.33444 -8.77854 -8.36824 -6.45485 0.48503 0.49909 0.72801 1.13340 1.38787 1.45211 1.52516 2.00004 2.07151 2.17362 2.71779 2.92101 3.01333 3.64993 3.70254 3.74733 3.99174 4.04620 4.24533 4.26075 4.32298 4.38885 4.43878 4.48293 4.65631 4.67986 4.70552 4.87164 4.95079 4.96911 5.01075 5.03912 5.14582 5.25679 5.27036 5.38796 5.55596 5.60413 5.69313 5.77880 5.81144 5.98231 6.01773 6.05414 6.21186 6.48390 6.57055 6.57422 6.79067 6.90725 6.95202 7.29243 8.17841 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.027777 B = 0.002827 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.781389 B = 9903.419566 C =10647.771246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.037 3.963 3 Si 0.985 3.015 4 H -0.252 1.252 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.475 4.475 8 H 0.092 0.908 9 C 0.103 3.897 10 C -0.200 4.200 11 C -0.052 4.052 12 C -0.288 4.288 13 C 0.576 3.424 14 O -0.604 6.604 15 N -0.608 5.608 16 C 0.087 3.913 17 C -0.098 4.098 18 C -0.035 4.035 19 C -0.187 4.187 20 C -0.070 4.070 21 C -0.211 4.211 22 C 0.216 3.784 23 N -0.872 5.872 24 C -0.192 4.192 25 C 0.166 3.834 26 C -0.048 4.048 27 C -0.243 4.243 28 H 0.295 0.705 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.136 0.864 36 H 0.147 0.853 37 H 0.141 0.859 38 H 0.399 0.601 39 H 0.409 0.591 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.140 0.860 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.884 -17.696 -4.292 18.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.182 4.182 3 Si 0.805 3.195 4 H -0.176 1.176 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.502 4.502 8 H 0.110 0.890 9 C 0.099 3.901 10 C -0.219 4.219 11 C -0.071 4.071 12 C -0.293 4.293 13 C 0.370 3.630 14 O -0.488 6.488 15 N -0.340 5.340 16 C -0.034 4.034 17 C -0.135 4.135 18 C -0.036 4.036 19 C -0.207 4.207 20 C -0.089 4.089 21 C -0.234 4.234 22 C 0.109 3.891 23 N -0.412 5.412 24 C -0.198 4.198 25 C 0.043 3.957 26 C -0.066 4.066 27 C -0.262 4.262 28 H 0.106 0.894 29 H 0.120 0.880 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.135 0.865 34 H 0.097 0.903 35 H 0.154 0.846 36 H 0.164 0.836 37 H 0.158 0.842 38 H 0.228 0.772 39 H 0.239 0.761 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.157 0.843 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.406 -17.599 -3.762 18.001 hybrid contribution -0.443 0.903 0.598 1.171 sum -0.037 -16.696 -3.164 16.993 Atomic orbital electron populations 1.69793 1.09468 1.31566 1.31818 1.26964 0.95422 1.05044 0.90808 0.85190 0.78838 0.75022 0.80420 1.17602 1.19273 1.18490 1.20091 0.99340 0.92191 1.38595 0.89028 1.18101 0.90499 0.93660 0.87795 1.20865 1.01491 0.96455 1.03119 1.20461 0.97583 0.92369 0.96700 1.19040 1.05298 0.91553 1.13379 1.18585 0.77608 0.83501 0.83279 1.90606 1.51661 1.83452 1.23075 1.47846 1.62292 1.11158 1.12679 1.22359 0.97450 1.02420 0.81213 1.20934 0.97986 0.91318 1.03254 1.19430 0.93914 0.95754 0.94456 1.21153 1.02686 0.92288 1.04613 1.21129 0.95811 0.97326 0.94628 1.20764 1.00517 0.97915 1.04160 1.17800 0.89334 0.92518 0.89424 1.42562 1.37929 1.13276 1.47386 1.19224 1.02708 0.93177 1.04654 1.19933 0.95475 0.80558 0.99685 1.20986 0.93451 0.98484 0.93672 1.20954 1.05273 0.92311 1.07648 0.89415 0.88038 0.89377 0.89844 0.87585 0.86514 0.90339 0.84583 0.83550 0.84150 0.77231 0.76073 0.90839 0.90763 0.84312 0.86413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.89 11.07 21.87 0.24 -39.65 16 2 C 0.04 1.72 5.10 85.35 0.44 2.16 16 3 Si 0.99 35.35 29.60 68.60 2.03 37.38 16 4 H -0.25 -8.58 7.11 99.48 0.71 -7.87 16 5 H -0.27 -9.19 7.11 99.48 0.71 -8.49 16 6 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 7 C -0.47 -23.75 9.03 23.46 0.21 -23.54 16 8 H 0.09 4.28 7.92 -2.91 -0.02 4.26 16 9 C 0.10 5.28 5.56 -21.28 -0.12 5.17 16 10 C -0.20 -10.62 8.63 22.47 0.19 -10.42 16 11 C -0.05 -2.64 9.53 22.25 0.21 -2.43 16 12 C -0.29 -13.43 5.42 -19.93 -0.11 -13.54 16 13 C 0.58 25.50 7.41 86.73 0.64 26.14 16 14 O -0.60 -30.30 16.35 -4.00 -0.07 -30.36 16 15 N -0.61 -21.27 2.94 -828.39 -2.44 -23.70 16 16 C 0.09 2.49 5.55 86.17 0.48 2.97 16 17 C -0.10 -2.28 5.50 29.75 0.16 -2.12 16 18 C -0.03 -0.85 5.76 -19.87 -0.11 -0.97 16 19 C -0.19 -3.78 9.58 22.40 0.21 -3.57 16 20 C -0.07 -1.25 10.04 22.18 0.22 -1.03 16 21 C -0.21 -3.93 9.89 22.34 0.22 -3.70 16 22 C 0.22 4.77 6.72 38.29 0.26 5.03 16 23 N -0.87 -15.06 8.98 -51.17 -0.46 -15.52 16 24 C -0.19 -5.07 5.82 -19.82 -0.12 -5.19 16 25 C 0.17 4.99 5.12 85.50 0.44 5.43 16 26 C -0.05 -1.99 7.30 22.25 0.16 -1.83 16 27 C -0.24 -10.98 9.73 22.47 0.22 -10.76 16 28 H 0.29 13.19 8.29 -92.71 -0.77 12.42 16 29 H 0.10 5.60 6.25 -2.91 -0.02 5.58 16 30 H 0.09 4.47 7.97 -2.91 -0.02 4.45 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.11 3.37 4.20 -2.39 -0.01 3.36 16 33 H 0.12 2.02 8.10 -2.39 -0.02 2.00 16 34 H 0.08 1.95 6.62 -2.39 -0.02 1.94 16 35 H 0.14 2.16 8.05 -2.91 -0.02 2.14 16 36 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 38 H 0.40 7.10 7.03 -92.71 -0.65 6.45 16 39 H 0.41 4.82 8.83 -92.71 -0.82 4.00 16 40 H 0.07 2.42 6.47 -2.39 -0.02 2.41 16 41 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.14 4.76 3.99 -2.91 -0.01 4.74 16 43 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -65.38 346.16 2.54 -62.84 By element: Atomic # 1 Polarization: 41.60 SS G_CDS: -0.39 Total: 41.22 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 3.62 Total: -32.20 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -2.65 Total: -78.87 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.07 Total: -30.36 kcal Atomic # 14 Polarization: 35.35 SS G_CDS: 2.03 Total: 37.38 kcal Total: -65.38 2.54 -62.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.345 kcal (2) G-P(sol) polarization free energy of solvation -65.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds