Wall clock time and date at job start Tue Mar 31 2020 13:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86802 * 119.99927 * 2 1 4 4 H 1.48509 * 109.46965 * 87.22186 * 3 2 1 5 5 H 1.48499 * 109.47061 * 207.21814 * 3 2 1 6 6 H 1.48502 * 109.47123 * 327.22284 * 3 2 1 7 7 C 1.40267 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00188 * 10.51043 * 7 2 1 9 9 C 1.40891 * 120.00197 * 190.50733 * 7 2 1 10 10 C 1.40711 * 120.32596 * 36.33258 * 9 7 2 11 11 C 1.37597 * 119.87929 * 180.02562 * 10 9 7 12 12 C 1.38824 * 120.57318 * 359.97438 * 11 10 9 13 13 C 1.38228 * 120.67423 * 0.02562 * 12 11 10 14 14 C 1.39222 * 120.09079 * 359.71805 * 13 12 11 15 15 C 1.47433 * 120.27950 * 180.27937 * 14 13 12 16 16 O 1.21617 * 119.99806 * 175.66724 * 15 14 13 17 17 N 1.34775 * 120.00159 * 355.67294 * 15 14 13 18 18 C 1.46504 * 120.00020 * 179.97438 * 17 15 14 19 19 C 1.50693 * 109.47206 * 179.97438 * 18 17 15 20 20 C 1.38262 * 120.00092 * 269.72795 * 19 18 17 21 21 C 1.38217 * 120.00545 * 179.74706 * 20 19 18 22 22 C 1.38179 * 120.02591 * 0.52191 * 21 20 19 23 23 C 1.38454 * 119.96930 * 359.73519 * 22 21 20 24 24 C 1.38173 * 119.96627 * 0.02562 * 23 22 21 25 25 C 1.51181 * 108.25092 * 180.02562 * 23 22 21 26 26 N 1.48056 * 105.67548 * 342.49969 * 25 23 22 27 27 C 1.48052 * 103.88687 * 27.60343 * 26 25 23 28 28 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.05741 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.71536 * 179.97438 * 11 10 9 31 31 H 1.08003 * 119.66168 * 179.97438 * 12 11 10 32 32 H 1.08001 * 119.95020 * 180.02562 * 13 12 11 33 33 H 0.97001 * 120.00277 * 0.02562 * 17 15 14 34 34 H 1.08992 * 109.47032 * 300.00420 * 18 17 15 35 35 H 1.09004 * 109.46511 * 59.99738 * 18 17 15 36 36 H 1.08004 * 119.99396 * 359.97438 * 20 19 18 37 37 H 1.07994 * 119.98772 * 180.25053 * 21 20 19 38 38 H 1.07995 * 119.98683 * 180.02562 * 24 23 22 39 39 H 1.09001 * 110.20982 * 101.54678 * 25 23 22 40 40 H 1.08997 * 110.20537 * 223.44594 * 25 23 22 41 41 H 1.00900 * 110.99971 * 146.96762 * 26 25 23 42 42 H 1.09001 * 110.20621 * 213.34287 * 27 26 25 43 43 H 1.09000 * 110.27469 * 91.48427 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4290 2.0804 1.3985 5 1 3.5660 1.4239 -0.6404 6 1 1.4683 2.6350 -0.7580 7 6 2.0076 -1.2147 0.0005 8 1 1.4812 -2.1423 -0.1697 9 6 3.3988 -1.2249 0.2231 10 6 3.9796 -0.3209 1.1316 11 6 5.3394 -0.3386 1.3415 12 6 6.1467 -1.2423 0.6643 13 6 5.6008 -2.1406 -0.2334 14 6 4.2277 -2.1507 -0.4631 15 6 3.6403 -3.1111 -1.4150 16 8 2.4334 -3.1692 -1.5533 17 7 4.4407 -3.9247 -2.1317 18 6 3.8569 -4.8795 -3.0772 19 6 4.9579 -5.6623 -3.7450 20 6 5.5181 -5.2012 -4.9219 21 6 6.5316 -5.9163 -5.5317 22 6 6.9780 -7.0979 -4.9713 23 6 6.4133 -7.5624 -3.7956 24 6 5.4036 -6.8443 -3.1840 25 6 7.0937 -8.8604 -3.4240 26 7 7.7674 -9.3261 -4.6574 27 6 8.0446 -8.0780 -5.4039 28 1 -0.4850 0.8401 -0.0004 29 1 3.3593 0.3859 1.6626 30 1 5.7824 0.3567 2.0391 31 1 7.2124 -1.2430 0.8399 32 1 6.2398 -2.8388 -0.7535 33 1 5.4032 -3.8788 -2.0211 34 1 3.1973 -5.5630 -2.5427 35 1 3.2857 -4.3396 -3.8326 36 1 5.1663 -4.2801 -5.3628 37 1 6.9718 -5.5538 -6.4488 38 1 4.9632 -7.2061 -2.2667 39 1 7.8272 -8.6890 -2.6362 40 1 6.3550 -9.5930 -3.0988 41 1 8.6229 -9.8148 -4.4396 42 1 7.9775 -8.2582 -6.4768 43 1 9.0329 -7.6963 -5.1478 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:23 Heat of formation + Delta-G solvation = 23.880951 kcal Electronic energy + Delta-G solvation = -25564.810516 eV Core-core repulsion = 21960.353309 eV Total energy + Delta-G solvation = -3604.457207 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.54405 -39.05444 -37.34266 -36.61254 -34.15555 -33.51246 -31.71577 -30.86773 -30.46364 -29.74109 -28.00170 -26.03989 -25.06749 -23.38647 -22.27260 -21.58009 -21.10522 -20.46026 -19.51177 -17.62776 -17.12036 -16.78425 -15.88400 -15.69975 -15.39681 -15.34557 -14.87268 -14.38218 -14.10302 -14.00287 -13.91967 -13.71437 -13.58156 -13.23960 -12.68456 -12.57025 -12.53870 -12.37238 -12.28917 -12.17270 -11.88244 -11.47534 -11.36286 -10.98095 -10.92856 -10.70686 -10.45186 -10.18936 -9.81564 -9.47727 -9.26341 -9.02168 -8.61446 -8.43103 -8.34524 -7.82705 -7.59799 -6.90725 -4.49166 1.03818 1.19290 2.09645 2.59467 3.07936 3.16801 3.28136 3.40407 3.85841 3.93648 4.00312 4.08412 4.18313 4.24378 4.59287 4.71568 4.82458 5.01081 5.04545 5.11543 5.29132 5.31709 5.37632 5.46623 5.61164 5.68922 5.78271 5.86481 5.94661 5.98342 6.01887 6.10571 6.17170 6.38765 6.42031 6.50190 6.50336 6.76927 6.78816 6.80480 7.05268 7.09184 7.22373 7.38571 7.58126 7.74884 8.00770 8.30577 8.47319 8.63241 8.86065 9.34484 10.05900 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.021697 B = 0.002758 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.199538 B =10151.015059 C =10711.859749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.242 1.242 6 H -0.289 1.289 7 C -0.401 4.401 8 H 0.124 0.876 9 C 0.116 3.884 10 C -0.226 4.226 11 C -0.065 4.065 12 C -0.255 4.255 13 C -0.041 4.041 14 C -0.249 4.249 15 C 0.561 3.439 16 O -0.527 6.527 17 N -0.744 5.744 18 C 0.166 3.834 19 C -0.092 4.092 20 C -0.097 4.097 21 C -0.101 4.101 22 C -0.105 4.105 23 C -0.108 4.108 24 C -0.081 4.081 25 C 0.080 3.920 26 N -0.660 5.660 27 C 0.080 3.920 28 H 0.287 0.713 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.392 0.608 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.345 0.655 42 H 0.090 0.910 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.829 -11.494 -8.146 20.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.165 1.165 6 H -0.216 1.216 7 C -0.428 4.428 8 H 0.142 0.858 9 C 0.112 3.888 10 C -0.245 4.245 11 C -0.084 4.084 12 C -0.274 4.274 13 C -0.060 4.060 14 C -0.253 4.253 15 C 0.354 3.646 16 O -0.405 6.405 17 N -0.400 5.400 18 C 0.042 3.958 19 C -0.093 4.093 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.106 4.106 23 C -0.109 4.109 24 C -0.100 4.100 25 C -0.049 4.049 26 N -0.288 5.288 27 C -0.049 4.049 28 H 0.098 0.902 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.226 0.774 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.148 0.852 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.077 0.923 40 H 0.109 0.891 41 H 0.161 0.839 42 H 0.108 0.892 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.021 -11.702 -8.646 19.525 hybrid contribution 1.565 1.248 0.586 2.086 sum 14.586 -10.454 -8.060 19.672 Atomic orbital electron populations 1.69570 1.08214 1.30352 1.33450 1.26385 0.94873 1.01657 0.91278 0.86394 0.81342 0.79795 0.79199 1.19421 1.16547 1.21604 1.20202 0.90848 0.96626 1.35098 0.85810 1.17555 0.93155 0.89476 0.88646 1.21151 0.94691 1.04993 1.03616 1.20737 0.93745 0.96669 0.97247 1.20282 0.97854 1.03187 1.06122 1.20773 0.93562 0.95996 0.95622 1.19384 0.92719 1.06964 1.06270 1.18376 0.86239 0.79968 0.79999 1.90735 1.14183 1.68634 1.66929 1.46046 1.10011 1.39929 1.43976 1.20002 0.92556 0.91032 0.92216 1.19946 0.98196 0.95381 0.95768 1.21087 0.95806 0.99630 0.95071 1.20443 0.97353 0.94038 1.00131 1.20535 0.97955 0.95744 0.96364 1.20477 0.97343 0.96792 0.96279 1.20427 0.95679 0.94172 0.99678 1.21396 0.97823 0.93634 0.92033 1.63498 1.27812 1.19912 1.17626 1.21392 0.95494 0.87952 1.00055 0.90247 0.87774 0.88584 0.88582 0.88785 0.77354 0.91119 0.91009 0.85230 0.85880 0.85627 0.92320 0.89085 0.83913 0.89233 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.56 13.92 55.56 0.77 -20.79 16 2 C 0.08 2.10 5.47 -17.30 -0.09 2.00 16 3 Si 0.91 20.73 24.51 -169.99 -4.17 16.57 16 4 H -0.27 -5.83 6.76 56.52 0.38 -5.45 16 5 H -0.24 -5.67 6.72 56.52 0.38 -5.29 16 6 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.40 -11.24 8.31 -37.82 -0.31 -11.56 16 8 H 0.12 3.84 5.96 -52.48 -0.31 3.53 16 9 C 0.12 3.00 5.03 -106.54 -0.54 2.46 16 10 C -0.23 -5.33 7.00 -38.88 -0.27 -5.60 16 11 C -0.07 -1.36 10.01 -39.60 -0.40 -1.75 16 12 C -0.26 -5.01 10.03 -39.37 -0.39 -5.40 16 13 C -0.04 -0.81 9.52 -39.22 -0.37 -1.18 16 14 C -0.25 -5.81 5.92 -104.37 -0.62 -6.42 16 15 C 0.56 12.66 7.72 -12.52 -0.10 12.56 16 16 O -0.53 -13.92 13.53 5.26 0.07 -13.85 16 17 N -0.74 -12.81 5.50 -62.56 -0.34 -13.15 16 18 C 0.17 2.49 5.80 -5.20 -0.03 2.46 16 19 C -0.09 -1.15 5.25 -104.62 -0.55 -1.69 16 20 C -0.10 -1.10 9.70 -39.58 -0.38 -1.48 16 21 C -0.10 -1.03 10.04 -39.61 -0.40 -1.43 16 22 C -0.11 -1.09 6.26 -104.33 -0.65 -1.74 16 23 C -0.11 -1.17 6.26 -104.33 -0.65 -1.83 16 24 C -0.08 -0.94 9.70 -39.61 -0.38 -1.32 16 25 C 0.08 0.69 7.45 -4.10 -0.03 0.66 16 26 N -0.66 -5.34 7.72 -114.03 -0.88 -6.22 16 27 C 0.08 0.64 7.45 -4.11 -0.03 0.61 16 28 H 0.29 7.00 8.29 -40.82 -0.34 6.66 16 29 H 0.10 2.42 5.00 -52.49 -0.26 2.16 16 30 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.10 1.61 8.06 -52.48 -0.42 1.18 16 32 H 0.09 1.54 6.42 -52.49 -0.34 1.20 16 33 H 0.39 5.91 6.51 -40.82 -0.27 5.65 16 34 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 35 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 36 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.35 1.93 8.92 -39.29 -0.35 1.58 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 352.86 15.07 5.32 5.32 Total: -1.00 -31.13 352.86 -10.79 -41.92 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -5.35 Total: 10.87 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -6.21 Total: -20.66 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: -0.45 Total: -40.16 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.07 Total: -13.85 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.17 Total: 16.57 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.13 -10.79 -41.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.802 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds