Wall clock time and date at job start Tue Mar 31 2020 13:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86802 * 119.99927 * 2 1 4 4 H 1.48509 * 109.46965 * 87.22186 * 3 2 1 5 5 H 1.48499 * 109.47061 * 207.21814 * 3 2 1 6 6 H 1.48502 * 109.47123 * 327.22284 * 3 2 1 7 7 C 1.40267 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00188 * 10.51043 * 7 2 1 9 9 C 1.40891 * 120.00197 * 190.50733 * 7 2 1 10 10 C 1.40711 * 120.32596 * 36.33258 * 9 7 2 11 11 C 1.37597 * 119.87929 * 180.02562 * 10 9 7 12 12 C 1.38824 * 120.57318 * 359.97438 * 11 10 9 13 13 C 1.38228 * 120.67423 * 0.02562 * 12 11 10 14 14 C 1.39222 * 120.09079 * 359.71805 * 13 12 11 15 15 C 1.47433 * 120.27950 * 180.27937 * 14 13 12 16 16 O 1.21617 * 119.99806 * 175.66724 * 15 14 13 17 17 N 1.34775 * 120.00159 * 355.67294 * 15 14 13 18 18 C 1.46504 * 120.00020 * 179.97438 * 17 15 14 19 19 C 1.50693 * 109.47206 * 179.97438 * 18 17 15 20 20 C 1.38262 * 120.00092 * 269.72795 * 19 18 17 21 21 C 1.38217 * 120.00545 * 179.74706 * 20 19 18 22 22 C 1.38179 * 120.02591 * 0.52191 * 21 20 19 23 23 C 1.38454 * 119.96930 * 359.73519 * 22 21 20 24 24 C 1.38173 * 119.96627 * 0.02562 * 23 22 21 25 25 C 1.51181 * 108.25092 * 180.02562 * 23 22 21 26 26 N 1.48056 * 105.67548 * 342.49969 * 25 23 22 27 27 C 1.48052 * 103.88687 * 27.60343 * 26 25 23 28 28 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.05741 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.71536 * 179.97438 * 11 10 9 31 31 H 1.08003 * 119.66168 * 179.97438 * 12 11 10 32 32 H 1.08001 * 119.95020 * 180.02562 * 13 12 11 33 33 H 0.97001 * 120.00277 * 0.02562 * 17 15 14 34 34 H 1.08992 * 109.47032 * 300.00420 * 18 17 15 35 35 H 1.09004 * 109.46511 * 59.99738 * 18 17 15 36 36 H 1.08004 * 119.99396 * 359.97438 * 20 19 18 37 37 H 1.07994 * 119.98772 * 180.25053 * 21 20 19 38 38 H 1.07995 * 119.98683 * 180.02562 * 24 23 22 39 39 H 1.09001 * 110.20982 * 101.54678 * 25 23 22 40 40 H 1.08997 * 110.20537 * 223.44594 * 25 23 22 41 41 H 1.00900 * 110.99971 * 146.96762 * 26 25 23 42 42 H 1.09001 * 110.20621 * 213.34287 * 27 26 25 43 43 H 1.09000 * 110.27469 * 91.48427 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4290 2.0804 1.3985 5 1 3.5660 1.4239 -0.6404 6 1 1.4683 2.6350 -0.7580 7 6 2.0076 -1.2147 0.0005 8 1 1.4812 -2.1423 -0.1697 9 6 3.3988 -1.2249 0.2231 10 6 3.9796 -0.3209 1.1316 11 6 5.3394 -0.3386 1.3415 12 6 6.1467 -1.2423 0.6643 13 6 5.6008 -2.1406 -0.2334 14 6 4.2277 -2.1507 -0.4631 15 6 3.6403 -3.1111 -1.4150 16 8 2.4334 -3.1692 -1.5533 17 7 4.4407 -3.9247 -2.1317 18 6 3.8569 -4.8795 -3.0772 19 6 4.9579 -5.6623 -3.7450 20 6 5.5181 -5.2012 -4.9219 21 6 6.5316 -5.9163 -5.5317 22 6 6.9780 -7.0979 -4.9713 23 6 6.4133 -7.5624 -3.7956 24 6 5.4036 -6.8443 -3.1840 25 6 7.0937 -8.8604 -3.4240 26 7 7.7674 -9.3261 -4.6574 27 6 8.0446 -8.0780 -5.4039 28 1 -0.4850 0.8401 -0.0004 29 1 3.3593 0.3859 1.6626 30 1 5.7824 0.3567 2.0391 31 1 7.2124 -1.2430 0.8399 32 1 6.2398 -2.8388 -0.7535 33 1 5.4032 -3.8788 -2.0211 34 1 3.1973 -5.5630 -2.5427 35 1 3.2857 -4.3396 -3.8326 36 1 5.1663 -4.2801 -5.3628 37 1 6.9718 -5.5538 -6.4488 38 1 4.9632 -7.2061 -2.2667 39 1 7.8272 -8.6890 -2.6362 40 1 6.3550 -9.5930 -3.0988 41 1 8.6229 -9.8148 -4.4396 42 1 7.9775 -8.2582 -6.4768 43 1 9.0329 -7.6963 -5.1478 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:22 Heat of formation + Delta-G solvation = 2.131030 kcal Electronic energy + Delta-G solvation = -25565.753664 eV Core-core repulsion = 21960.353309 eV Total energy + Delta-G solvation = -3605.400355 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.39511 -40.72453 -38.85982 -37.74126 -35.77317 -35.19765 -32.74466 -32.29441 -32.05050 -31.03004 -28.81965 -27.46664 -26.57107 -24.34786 -23.85388 -22.78912 -22.29943 -21.54470 -21.13575 -19.47401 -18.46502 -17.78903 -17.19982 -16.95687 -16.60918 -16.43243 -16.08444 -15.82186 -15.80333 -15.42464 -15.33447 -14.75987 -14.61360 -14.48830 -14.14837 -13.97319 -13.89957 -13.51867 -13.37530 -13.18618 -13.17753 -13.01235 -12.69159 -12.52005 -12.26714 -12.20256 -12.02694 -11.78407 -11.61742 -11.08984 -10.46586 -10.11791 -10.04180 -9.81852 -9.52692 -9.41947 -9.19134 -8.82411 -6.48846 0.15391 0.33393 0.35627 0.83139 1.23515 1.37056 1.46277 2.09746 2.24643 2.34341 2.70998 2.84251 3.27108 3.34157 3.52804 3.55110 3.73683 4.01080 4.20573 4.23428 4.26149 4.39359 4.41261 4.43969 4.49713 4.56680 4.62289 4.65937 4.74794 4.84711 4.85506 4.98691 5.00890 5.08110 5.29426 5.32006 5.35140 5.45981 5.54969 5.57108 5.67791 5.68170 5.86280 5.93350 5.96145 6.26670 6.34167 6.47243 6.65942 6.78382 6.89993 7.61258 8.21715 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.021697 B = 0.002758 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.199538 B =10151.015059 C =10711.859749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.035 3.965 3 Si 0.967 3.033 4 H -0.248 1.248 5 H -0.249 1.249 6 H -0.280 1.280 7 C -0.449 4.449 8 H 0.072 0.928 9 C 0.099 3.901 10 C -0.246 4.246 11 C -0.061 4.061 12 C -0.231 4.231 13 C -0.039 4.039 14 C -0.265 4.265 15 C 0.554 3.446 16 O -0.577 6.577 17 N -0.721 5.721 18 C 0.169 3.831 19 C -0.103 4.103 20 C -0.103 4.103 21 C -0.101 4.101 22 C -0.108 4.108 23 C -0.119 4.119 24 C -0.089 4.089 25 C 0.081 3.919 26 N -0.669 5.669 27 C 0.081 3.919 28 H 0.293 0.707 29 H 0.102 0.898 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.136 0.864 33 H 0.406 0.594 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.134 0.866 37 H 0.148 0.852 38 H 0.126 0.874 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.360 0.640 42 H 0.099 0.901 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.323 -11.624 -8.492 24.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.179 4.179 3 Si 0.790 3.210 4 H -0.172 1.172 5 H -0.172 1.172 6 H -0.207 1.207 7 C -0.478 4.478 8 H 0.090 0.910 9 C 0.095 3.905 10 C -0.265 4.265 11 C -0.079 4.079 12 C -0.249 4.249 13 C -0.058 4.058 14 C -0.270 4.270 15 C 0.347 3.653 16 O -0.458 6.458 17 N -0.375 5.375 18 C 0.046 3.954 19 C -0.103 4.103 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.109 4.109 23 C -0.120 4.120 24 C -0.108 4.108 25 C -0.048 4.048 26 N -0.299 5.299 27 C -0.048 4.048 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.155 0.845 31 H 0.162 0.838 32 H 0.154 0.846 33 H 0.243 0.757 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.152 0.848 37 H 0.166 0.834 38 H 0.144 0.856 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.177 0.823 42 H 0.117 0.883 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 18.579 -11.868 -8.994 23.810 hybrid contribution 0.207 1.039 0.649 1.242 sum 18.785 -10.829 -8.345 23.233 Atomic orbital electron populations 1.69627 1.09528 1.31377 1.37011 1.27125 0.95562 1.04486 0.90707 0.85483 0.79459 0.75918 0.80173 1.17217 1.17240 1.20706 1.19950 0.92459 0.95591 1.39817 0.90967 1.17824 0.92561 0.90932 0.89143 1.21254 0.96416 1.05120 1.03727 1.21251 0.92456 0.97057 0.97177 1.20937 1.00126 1.00616 1.03265 1.21197 0.92157 0.96739 0.95673 1.19773 0.94504 1.06453 1.06233 1.18558 0.85919 0.80448 0.80368 1.90738 1.16484 1.70217 1.68358 1.45803 1.10222 1.38692 1.42796 1.19984 0.93597 0.90426 0.91397 1.19640 0.98217 0.95856 0.96634 1.21201 0.96174 1.00091 0.94697 1.20695 0.96673 0.93798 1.00743 1.20949 0.98121 0.95909 0.95946 1.20764 0.97040 0.97651 0.96543 1.20464 0.96206 0.94109 0.99983 1.21419 0.98120 0.92518 0.92719 1.63482 1.28920 1.20091 1.17382 1.21466 0.95459 0.87301 1.00528 0.89627 0.87996 0.84517 0.83833 0.84619 0.75690 0.92227 0.92100 0.84799 0.83417 0.85592 0.90865 0.89061 0.82256 0.88338 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.90 13.92 21.88 0.30 -49.60 16 2 C 0.04 2.00 5.47 85.37 0.47 2.47 16 3 Si 0.97 43.92 24.51 68.60 1.68 45.60 16 4 H -0.25 -10.24 6.76 99.48 0.67 -9.56 16 5 H -0.25 -11.34 6.72 99.48 0.67 -10.67 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.45 -27.20 8.31 23.41 0.19 -27.01 16 8 H 0.07 5.00 5.96 -2.91 -0.02 4.98 16 9 C 0.10 5.25 5.03 -21.11 -0.11 5.14 16 10 C -0.25 -11.33 7.00 22.72 0.16 -11.17 16 11 C -0.06 -2.26 10.01 22.26 0.22 -2.04 16 12 C -0.23 -7.71 10.03 22.41 0.22 -7.48 16 13 C -0.04 -1.41 9.52 22.50 0.21 -1.19 16 14 C -0.26 -12.35 5.92 -19.70 -0.12 -12.47 16 15 C 0.55 25.93 7.72 86.67 0.67 26.60 16 16 O -0.58 -32.98 13.53 -4.08 -0.06 -33.04 16 17 N -0.72 -24.80 5.50 -470.10 -2.58 -27.39 16 18 C 0.17 5.25 5.80 85.63 0.50 5.75 16 19 C -0.10 -2.50 5.25 -19.86 -0.10 -2.60 16 20 C -0.10 -2.19 9.70 22.27 0.22 -1.97 16 21 C -0.10 -1.79 10.04 22.25 0.22 -1.56 16 22 C -0.11 -1.94 6.26 -19.67 -0.12 -2.07 16 23 C -0.12 -2.35 6.26 -19.68 -0.12 -2.47 16 24 C -0.09 -1.98 9.70 22.25 0.22 -1.77 16 25 C 0.08 1.20 7.45 85.49 0.64 1.84 16 26 N -0.67 -8.82 7.72 -514.69 -3.97 -12.79 16 27 C 0.08 1.03 7.45 85.49 0.64 1.67 16 28 H 0.29 15.37 8.29 -92.71 -0.77 14.60 16 29 H 0.10 4.67 5.00 -2.91 -0.01 4.65 16 30 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 31 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 32 H 0.14 3.72 6.42 -2.91 -0.02 3.70 16 33 H 0.41 11.45 6.51 -92.71 -0.60 10.85 16 34 H 0.06 1.98 8.09 -2.39 -0.02 1.96 16 35 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 36 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 37 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.36 2.87 8.92 -89.69 -0.80 2.07 16 42 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -74.71 352.86 -1.03 -75.74 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: -0.41 Total: 31.82 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 4.01 Total: -30.35 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -6.25 Total: -89.77 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -0.06 Total: -33.04 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.68 Total: 45.60 kcal Total: -74.71 -1.03 -75.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.866 kcal (2) G-P(sol) polarization free energy of solvation -74.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds