Wall clock time and date at job start Tue Mar 31 2020 12:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47099 * 2 1 4 4 C 1.50703 * 109.47375 * 239.99399 * 2 1 3 5 5 O 1.20822 * 120.00383 * 239.99993 * 4 2 1 6 6 O 1.34232 * 119.99513 * 60.00274 * 4 2 1 7 7 N 1.46507 * 109.46925 * 119.99555 * 2 1 3 8 8 C 1.34776 * 119.99835 * 241.33270 * 7 2 1 9 9 O 1.21587 * 120.00334 * 4.97762 * 8 7 2 10 10 N 1.34781 * 119.99733 * 184.98263 * 8 7 2 11 11 C 1.40198 * 119.99849 * 174.69831 * 10 8 7 12 12 C 1.40399 * 125.97131 * 0.02562 * 11 10 8 13 13 C 1.35242 * 107.86780 * 179.74133 * 12 11 10 14 14 N 1.34965 * 107.85762 * 0.36222 * 13 12 11 15 15 C 1.46494 * 125.97876 * 179.90152 * 14 13 12 16 16 C 1.50700 * 109.47579 * 124.71487 * 15 14 13 17 17 H 1.07999 * 119.99498 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00211 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99763 * 179.72367 * 18 16 15 20 20 Si 1.86802 * 120.00255 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46654 * 269.72255 * 20 18 16 22 22 H 1.48504 * 109.46802 * 29.72008 * 20 18 16 23 23 H 1.48496 * 109.47369 * 149.72471 * 20 18 16 24 24 N 1.31210 * 125.97229 * 179.97438 * 11 10 8 25 25 C 1.46501 * 120.00116 * 61.33701 * 7 2 1 26 26 C 1.53001 * 117.49721 * 2.32071 * 25 7 2 27 27 C 1.52994 * 59.99963 * 252.51234 * 26 25 7 28 28 H 1.09005 * 109.47392 * 303.79611 * 1 2 3 29 29 H 1.08998 * 109.47289 * 63.80335 * 1 2 3 30 30 H 1.09010 * 109.46855 * 183.80173 * 1 2 3 31 31 H 0.96700 * 116.99850 * 180.02562 * 6 4 2 32 32 H 0.96993 * 120.00080 * 354.69758 * 10 8 7 33 33 H 1.07997 * 126.06649 * 359.96285 * 12 11 10 34 34 H 1.07995 * 126.07638 * 180.25956 * 13 12 11 35 35 H 1.08999 * 109.47211 * 4.71303 * 15 14 13 36 36 H 1.09006 * 109.47030 * 244.71474 * 15 14 13 37 37 H 0.96999 * 119.99597 * 180.27856 * 19 18 16 38 38 H 1.08996 * 115.55389 * 148.02482 * 25 7 2 39 39 H 1.08998 * 117.50245 * 359.97438 * 26 25 7 40 40 H 1.08997 * 117.50183 * 145.02483 * 26 25 7 41 41 H 1.08997 * 117.50265 * 252.51105 * 27 26 25 42 42 H 1.09005 * 117.50102 * 107.49411 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7271 -1.6929 -1.1195 6 8 1.7082 -0.2520 -2.4496 7 7 2.0183 -0.6906 1.1963 8 6 2.7708 -0.0279 2.0969 9 8 2.9691 1.1643 1.9638 10 7 3.3036 -0.6869 3.1450 11 6 4.1761 -0.0240 4.0196 12 6 4.5785 1.3176 3.9233 13 6 5.4149 1.5750 4.9544 14 7 5.5465 0.4406 5.6737 15 6 6.3651 0.2747 6.8772 16 6 5.5056 -0.2420 8.0021 17 1 4.4548 -0.4285 7.8369 18 6 6.0610 -0.4775 9.2419 19 7 5.3097 -0.9233 10.2250 20 14 7.8788 -0.1555 9.5275 21 1 8.6525 -1.3873 9.2286 22 1 8.3329 0.9426 8.6368 23 1 8.0960 0.2339 10.9439 24 7 4.7586 -0.5488 5.0717 25 6 1.6887 -2.1014 1.4135 26 6 0.8772 -2.8124 0.3287 27 6 0.2209 -2.4535 1.6634 28 1 -0.3634 0.5716 0.8540 29 1 -0.3634 0.4537 -0.9221 30 1 -0.3633 -1.0255 0.0681 31 1 2.0536 -0.7412 -3.2088 32 1 3.0835 -1.6196 3.2941 33 1 4.2715 2.0205 3.1630 34 1 5.8940 2.5199 5.1641 35 1 6.7944 1.2358 7.1599 36 1 7.1666 -0.4363 6.6763 37 1 5.6997 -1.0851 11.0983 38 1 2.4431 -2.6845 1.9416 39 1 0.5882 -2.2304 -0.5464 40 1 1.0977 -3.8635 0.1429 41 1 0.0097 -3.2685 2.3556 42 1 -0.4995 -1.6355 1.6662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588585543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:50 Heat of formation + Delta-G solvation = 30.551673 kcal Electronic energy + Delta-G solvation = -27261.207108 eV Core-core repulsion = 23246.189902 eV Total energy + Delta-G solvation = -4015.017206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.57946 -40.61334 -39.66876 -37.95912 -36.35176 -35.07574 -34.00207 -33.34347 -31.85140 -30.74601 -29.35915 -27.10039 -25.50127 -23.33361 -22.91163 -22.73343 -22.15852 -20.86584 -20.19951 -19.39658 -18.77496 -18.05803 -17.31241 -16.97194 -16.49672 -16.07706 -15.80482 -15.56951 -15.09676 -14.90806 -14.54945 -14.41493 -13.76159 -13.68531 -13.56905 -13.10454 -13.06298 -12.63977 -12.55454 -12.33644 -12.11218 -12.10492 -11.67499 -11.47853 -11.37562 -11.14961 -10.95664 -10.86591 -10.66976 -10.50967 -10.16480 -10.00551 -9.78816 -9.51103 -8.94902 -8.75532 -8.17335 -7.48949 -6.22450 -4.24612 1.82322 1.88366 2.48208 2.71277 2.99472 3.15198 3.18820 3.22367 3.27747 3.49346 3.78369 3.95894 4.23852 4.33788 4.43673 4.49729 4.62973 4.65863 4.82424 5.05548 5.14803 5.23220 5.31446 5.37799 5.47172 5.55453 5.70634 5.71885 5.76329 5.93675 6.10513 6.19178 6.35368 6.45380 6.53977 6.69727 6.78475 7.28034 7.39291 7.51330 7.72909 7.83876 8.34861 8.40846 8.58470 8.87647 9.32619 10.90275 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025502 B = 0.002652 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.676126 B =10554.606569 C =11030.421572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.168 3.832 3 H 0.145 0.855 4 C 0.464 3.536 5 O -0.494 6.494 6 O -0.514 6.514 7 N -0.584 5.584 8 C 0.728 3.272 9 O -0.562 6.562 10 N -0.636 5.636 11 C 0.277 3.723 12 C -0.282 4.282 13 C 0.053 3.947 14 N -0.320 5.320 15 C 0.232 3.768 16 C -0.534 4.534 17 H 0.086 0.914 18 C 0.076 3.924 19 N -0.888 5.888 20 Si 0.874 3.126 21 H -0.272 1.272 22 H -0.265 1.265 23 H -0.281 1.281 24 N -0.298 5.298 25 C 0.074 3.926 26 C -0.169 4.169 27 C -0.200 4.200 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.411 0.589 32 H 0.409 0.591 33 H 0.162 0.838 34 H 0.169 0.831 35 H 0.054 0.946 36 H 0.037 0.963 37 H 0.268 0.732 38 H 0.130 0.870 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.875 0.009 -24.074 26.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.062 3.938 3 H 0.162 0.838 4 C 0.304 3.696 5 O -0.380 6.380 6 O -0.326 6.326 7 N -0.320 5.320 8 C 0.429 3.571 9 O -0.438 6.438 10 N -0.286 5.286 11 C 0.023 3.977 12 C -0.314 4.314 13 C -0.097 4.097 14 N -0.102 5.102 15 C 0.113 3.887 16 C -0.572 4.572 17 H 0.104 0.896 18 C -0.128 4.128 19 N -0.525 5.525 20 Si 0.701 3.299 21 H -0.197 1.197 22 H -0.189 1.189 23 H -0.206 1.206 24 N -0.128 5.128 25 C -0.031 4.031 26 C -0.206 4.206 27 C -0.239 4.239 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.270 0.730 32 H 0.246 0.754 33 H 0.179 0.821 34 H 0.186 0.814 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.147 0.853 39 H 0.114 0.886 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.417 -0.285 -22.778 24.649 hybrid contribution 1.020 -0.153 -0.554 1.171 sum -8.397 -0.438 -23.332 24.801 Atomic orbital electron populations 1.22646 0.91545 1.04802 1.04622 1.20280 0.96050 0.98044 0.79447 0.83805 1.23864 0.77704 0.82949 0.85090 1.90777 1.34861 1.25419 1.86942 1.84521 1.72345 1.59134 1.16616 1.46198 1.54796 1.10291 1.20718 1.15340 0.78009 0.84537 0.79241 1.90869 1.63949 1.12462 1.76472 1.41404 1.46557 1.14670 1.25958 1.18790 0.95061 0.92046 0.91837 1.21505 1.08579 0.96117 1.05166 1.22537 1.00819 0.92793 0.93527 1.48604 1.34133 1.05758 1.21671 1.20050 0.90097 0.98511 0.80028 1.21119 0.98023 1.45105 0.92958 0.89619 1.24836 0.97999 0.94320 0.95623 1.69878 1.35938 1.44307 1.02426 0.86889 0.85454 0.79346 0.78253 1.19724 1.18941 1.20612 1.77396 1.12397 1.14251 1.08794 1.21617 0.94586 0.82247 1.04658 1.23386 1.02628 1.01735 0.92876 1.23840 0.96090 1.04290 0.99660 0.89994 0.89799 0.89931 0.72996 0.75376 0.82051 0.81373 0.92873 0.94491 0.92197 0.85260 0.88605 0.87626 0.87547 0.87502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.18 8.03 37.16 0.30 -0.89 16 2 C 0.17 1.60 3.07 -69.08 -0.21 1.38 16 3 H 0.14 1.47 6.91 -51.93 -0.36 1.12 16 4 C 0.46 4.30 5.87 36.01 0.21 4.51 16 5 O -0.49 -5.91 14.57 -18.75 -0.27 -6.18 16 6 O -0.51 -3.21 13.26 -39.26 -0.52 -3.74 16 7 N -0.58 -6.75 2.51 -165.55 -0.42 -7.16 16 8 C 0.73 11.14 8.23 -86.91 -0.72 10.43 16 9 O -0.56 -9.88 12.84 5.29 0.07 -9.82 16 10 N -0.64 -10.40 5.35 -15.51 -0.08 -10.48 16 11 C 0.28 5.63 8.11 -154.36 -1.25 4.38 16 12 C -0.28 -5.55 9.61 -39.84 -0.38 -5.93 16 13 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 14 N -0.32 -7.30 3.67 -62.56 -0.23 -7.53 16 15 C 0.23 5.52 5.33 -5.20 -0.03 5.50 16 16 C -0.53 -15.11 9.79 -34.44 -0.34 -15.45 16 17 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 18 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 19 N -0.89 -26.67 13.96 55.43 0.77 -25.89 16 20 Si 0.87 20.21 27.47 -169.99 -4.67 15.54 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 N -0.30 -6.89 12.42 31.44 0.39 -6.50 16 25 C 0.07 0.71 5.09 -67.93 -0.35 0.37 16 26 C -0.17 -1.33 7.56 -26.73 -0.20 -1.53 16 27 C -0.20 -1.50 9.60 -26.74 -0.26 -1.76 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.43 8.02 -51.93 -0.42 0.01 16 30 H 0.08 0.51 3.43 -51.92 -0.18 0.33 16 31 H 0.41 0.95 9.10 45.56 0.41 1.36 16 32 H 0.41 5.75 6.68 -40.82 -0.27 5.48 16 33 H 0.16 3.07 5.93 -52.49 -0.31 2.76 16 34 H 0.17 2.58 8.06 -52.49 -0.42 2.16 16 35 H 0.05 1.16 7.13 -51.93 -0.37 0.79 16 36 H 0.04 0.87 7.57 -51.93 -0.39 0.47 16 37 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.13 1.23 6.74 -51.93 -0.35 0.88 16 39 H 0.10 0.73 4.04 -51.93 -0.21 0.52 16 40 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.11 0.76 6.08 -51.93 -0.32 0.45 16 LS Contribution 344.45 15.07 5.19 5.19 Total: -1.00 -35.99 344.45 -7.33 -43.32 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -4.04 Total: 9.37 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -3.52 Total: 3.87 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.44 Total: -57.56 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.73 Total: -19.73 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.67 Total: 15.54 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.99 -7.33 -43.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588585543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.871 kcal (2) G-P(sol) polarization free energy of solvation -35.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds