Wall clock time and date at job start Tue Mar 31 2020 12:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47099 * 2 1 4 4 C 1.50703 * 109.47375 * 239.99399 * 2 1 3 5 5 O 1.20822 * 120.00383 * 239.99993 * 4 2 1 6 6 O 1.34232 * 119.99513 * 60.00274 * 4 2 1 7 7 N 1.46507 * 109.46925 * 119.99555 * 2 1 3 8 8 C 1.34776 * 119.99835 * 241.33270 * 7 2 1 9 9 O 1.21587 * 120.00334 * 4.97762 * 8 7 2 10 10 N 1.34781 * 119.99733 * 184.98263 * 8 7 2 11 11 C 1.40198 * 119.99849 * 174.69831 * 10 8 7 12 12 C 1.40399 * 125.97131 * 0.02562 * 11 10 8 13 13 C 1.35242 * 107.86780 * 179.74133 * 12 11 10 14 14 N 1.34965 * 107.85762 * 0.36222 * 13 12 11 15 15 C 1.46494 * 125.97876 * 179.90152 * 14 13 12 16 16 C 1.50700 * 109.47579 * 124.71487 * 15 14 13 17 17 H 1.07999 * 119.99498 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00211 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99763 * 179.72367 * 18 16 15 20 20 Si 1.86802 * 120.00255 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46654 * 269.72255 * 20 18 16 22 22 H 1.48504 * 109.46802 * 29.72008 * 20 18 16 23 23 H 1.48496 * 109.47369 * 149.72471 * 20 18 16 24 24 N 1.31210 * 125.97229 * 179.97438 * 11 10 8 25 25 C 1.46501 * 120.00116 * 61.33701 * 7 2 1 26 26 C 1.53001 * 117.49721 * 2.32071 * 25 7 2 27 27 C 1.52994 * 59.99963 * 252.51234 * 26 25 7 28 28 H 1.09005 * 109.47392 * 303.79611 * 1 2 3 29 29 H 1.08998 * 109.47289 * 63.80335 * 1 2 3 30 30 H 1.09010 * 109.46855 * 183.80173 * 1 2 3 31 31 H 0.96700 * 116.99850 * 180.02562 * 6 4 2 32 32 H 0.96993 * 120.00080 * 354.69758 * 10 8 7 33 33 H 1.07997 * 126.06649 * 359.96285 * 12 11 10 34 34 H 1.07995 * 126.07638 * 180.25956 * 13 12 11 35 35 H 1.08999 * 109.47211 * 4.71303 * 15 14 13 36 36 H 1.09006 * 109.47030 * 244.71474 * 15 14 13 37 37 H 0.96999 * 119.99597 * 180.27856 * 19 18 16 38 38 H 1.08996 * 115.55389 * 148.02482 * 25 7 2 39 39 H 1.08998 * 117.50245 * 359.97438 * 26 25 7 40 40 H 1.08997 * 117.50183 * 145.02483 * 26 25 7 41 41 H 1.08997 * 117.50265 * 252.51105 * 27 26 25 42 42 H 1.09005 * 117.50102 * 107.49411 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7271 -1.6929 -1.1195 6 8 1.7082 -0.2520 -2.4496 7 7 2.0183 -0.6906 1.1963 8 6 2.7708 -0.0279 2.0969 9 8 2.9691 1.1643 1.9638 10 7 3.3036 -0.6869 3.1450 11 6 4.1761 -0.0240 4.0196 12 6 4.5785 1.3176 3.9233 13 6 5.4149 1.5750 4.9544 14 7 5.5465 0.4406 5.6737 15 6 6.3651 0.2747 6.8772 16 6 5.5056 -0.2420 8.0021 17 1 4.4548 -0.4285 7.8369 18 6 6.0610 -0.4775 9.2419 19 7 5.3097 -0.9233 10.2250 20 14 7.8788 -0.1555 9.5275 21 1 8.6525 -1.3873 9.2286 22 1 8.3329 0.9426 8.6368 23 1 8.0960 0.2339 10.9439 24 7 4.7586 -0.5488 5.0717 25 6 1.6887 -2.1014 1.4135 26 6 0.8772 -2.8124 0.3287 27 6 0.2209 -2.4535 1.6634 28 1 -0.3634 0.5716 0.8540 29 1 -0.3634 0.4537 -0.9221 30 1 -0.3633 -1.0255 0.0681 31 1 2.0536 -0.7412 -3.2088 32 1 3.0835 -1.6196 3.2941 33 1 4.2715 2.0205 3.1630 34 1 5.8940 2.5199 5.1641 35 1 6.7944 1.2358 7.1599 36 1 7.1666 -0.4363 6.6763 37 1 5.6997 -1.0851 11.0983 38 1 2.4431 -2.6845 1.9416 39 1 0.5882 -2.2304 -0.5464 40 1 1.0977 -3.8635 0.1429 41 1 0.0097 -3.2685 2.3556 42 1 -0.4995 -1.6355 1.6662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588585543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:49 Heat of formation + Delta-G solvation = 4.778491 kcal Electronic energy + Delta-G solvation = -27262.324717 eV Core-core repulsion = 23246.189902 eV Total energy + Delta-G solvation = -4016.134815 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.57510 -41.94472 -40.73704 -38.84172 -37.03232 -36.43225 -35.25443 -34.87497 -33.35553 -31.99591 -30.93755 -28.91524 -26.21813 -24.81286 -23.94832 -23.42979 -23.33958 -22.22575 -21.49940 -20.48875 -19.84651 -19.09222 -18.84247 -18.28388 -17.83046 -17.09681 -16.98884 -16.58164 -16.44071 -16.06255 -15.85815 -15.39437 -15.33714 -14.78750 -14.46049 -14.38777 -14.35523 -13.97828 -13.79759 -13.74189 -13.24409 -12.99877 -12.73527 -12.66491 -12.28353 -12.24466 -12.16199 -12.04147 -11.82115 -11.78457 -11.65575 -11.47914 -11.40153 -11.04168 -10.86866 -9.89552 -9.71619 -9.06373 -8.36708 -6.46912 0.81531 1.04060 1.10154 1.36941 1.40230 1.49098 1.53710 1.79393 2.08851 2.29578 2.32535 2.64968 2.85153 2.95999 3.61330 3.74856 3.81555 3.90672 3.97339 3.99566 4.18882 4.21664 4.55610 4.58520 4.60758 4.70844 4.74139 4.77955 4.84776 4.91772 4.97100 5.02754 5.13805 5.21324 5.24718 5.33840 5.54378 5.60153 5.87727 6.01584 6.40053 6.45928 6.59596 6.93408 7.03287 7.16032 7.19921 8.80394 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025502 B = 0.002652 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.676126 B =10554.606569 C =11030.421572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.158 3.842 3 H 0.135 0.865 4 C 0.473 3.527 5 O -0.525 6.525 6 O -0.503 6.503 7 N -0.574 5.574 8 C 0.724 3.276 9 O -0.589 6.589 10 N -0.634 5.634 11 C 0.281 3.719 12 C -0.293 4.293 13 C 0.064 3.936 14 N -0.344 5.344 15 C 0.239 3.761 16 C -0.547 4.547 17 H 0.026 0.974 18 C 0.014 3.986 19 N -0.943 5.943 20 Si 0.955 3.045 21 H -0.266 1.266 22 H -0.229 1.229 23 H -0.278 1.278 24 N -0.348 5.348 25 C 0.042 3.958 26 C -0.156 4.156 27 C -0.184 4.184 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.431 0.569 32 H 0.417 0.583 33 H 0.169 0.831 34 H 0.212 0.788 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.272 0.728 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.117 0.883 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.175 0.926 -25.914 27.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.053 3.947 3 H 0.153 0.847 4 C 0.314 3.686 5 O -0.414 6.414 6 O -0.317 6.317 7 N -0.310 5.310 8 C 0.425 3.575 9 O -0.466 6.466 10 N -0.286 5.286 11 C 0.026 3.974 12 C -0.324 4.324 13 C -0.084 4.084 14 N -0.126 5.126 15 C 0.119 3.881 16 C -0.585 4.585 17 H 0.045 0.955 18 C -0.185 4.185 19 N -0.582 5.582 20 Si 0.776 3.224 21 H -0.191 1.191 22 H -0.151 1.151 23 H -0.203 1.203 24 N -0.179 5.179 25 C -0.062 4.062 26 C -0.193 4.193 27 C -0.223 4.223 28 H 0.097 0.903 29 H 0.123 0.877 30 H 0.108 0.892 31 H 0.293 0.707 32 H 0.256 0.744 33 H 0.186 0.814 34 H 0.229 0.771 35 H 0.102 0.898 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.142 0.858 39 H 0.119 0.881 40 H 0.130 0.870 41 H 0.135 0.865 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.771 0.620 -24.711 26.229 hybrid contribution 0.615 -0.460 -0.147 0.782 sum -8.156 0.160 -24.857 26.162 Atomic orbital electron populations 1.22621 0.89082 1.05441 1.05606 1.20538 0.97892 0.97340 0.78932 0.84729 1.23665 0.76926 0.82226 0.85761 1.90776 1.36279 1.26828 1.87485 1.84469 1.71861 1.58975 1.16354 1.46193 1.53446 1.10959 1.20361 1.15492 0.78218 0.84396 0.79362 1.90829 1.65103 1.13588 1.77114 1.41463 1.46148 1.15075 1.25874 1.19131 0.94436 0.92623 0.91231 1.21711 1.08954 0.95978 1.05717 1.23241 0.99764 0.93178 0.92232 1.48511 1.35151 1.06809 1.22140 1.19908 0.89442 0.99766 0.78943 1.21242 0.96162 1.45800 0.95257 0.95527 1.25923 1.04216 0.93518 0.94800 1.70054 1.38929 1.45917 1.03264 0.85619 0.77548 0.80443 0.78765 1.19138 1.15136 1.20348 1.77311 1.14352 1.15800 1.10444 1.21835 0.96009 0.81354 1.06983 1.23425 1.01176 1.01853 0.92862 1.23895 0.94271 1.04502 0.99607 0.90267 0.87736 0.89217 0.70705 0.74437 0.81358 0.77096 0.89759 0.93813 0.91896 0.85772 0.88111 0.86952 0.86487 0.86838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 8.03 71.98 0.58 -1.34 16 2 C 0.16 2.85 3.07 44.25 0.14 2.98 16 3 H 0.14 2.70 6.91 -2.39 -0.02 2.68 16 4 C 0.47 8.06 5.87 71.24 0.42 8.48 16 5 O -0.52 -12.03 14.57 21.98 0.32 -11.71 16 6 O -0.50 -5.10 13.26 -51.44 -0.68 -5.78 16 7 N -0.57 -13.10 2.51 -795.93 -2.00 -15.10 16 8 C 0.72 22.40 8.23 179.05 1.47 23.88 16 9 O -0.59 -20.85 12.84 -3.99 -0.05 -20.90 16 10 N -0.63 -21.28 5.35 -321.23 -1.72 -23.00 16 11 C 0.28 11.67 8.11 133.31 1.08 12.75 16 12 C -0.29 -11.41 9.61 22.10 0.21 -11.20 16 13 C 0.06 2.39 11.44 83.52 0.96 3.34 16 14 N -0.34 -15.65 3.67 -351.85 -1.29 -16.94 16 15 C 0.24 11.15 5.33 85.63 0.46 11.61 16 16 C -0.55 -31.77 9.79 25.60 0.25 -31.52 16 17 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 18 C 0.01 0.80 5.47 84.65 0.46 1.27 16 19 N -0.94 -58.41 13.96 21.45 0.30 -58.11 16 20 Si 0.96 40.91 27.47 68.60 1.88 42.79 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.23 -8.42 6.54 99.48 0.65 -7.77 16 23 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 24 N -0.35 -16.60 12.42 -54.43 -0.68 -17.27 16 25 C 0.04 0.79 5.09 44.99 0.23 1.02 16 26 C -0.16 -2.20 7.56 30.59 0.23 -1.97 16 27 C -0.18 -2.48 9.60 30.59 0.29 -2.19 16 28 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.10 0.78 8.02 -2.39 -0.02 0.76 16 30 H 0.09 0.89 3.43 -2.38 -0.01 0.88 16 31 H 0.43 0.89 9.10 -74.06 -0.67 0.21 16 32 H 0.42 12.22 6.68 -92.71 -0.62 11.60 16 33 H 0.17 6.33 5.93 -2.91 -0.02 6.31 16 34 H 0.21 5.76 8.06 -2.91 -0.02 5.73 16 35 H 0.08 3.40 7.13 -2.39 -0.02 3.38 16 36 H 0.04 1.98 7.57 -2.38 -0.02 1.96 16 37 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 38 H 0.12 2.41 6.74 -2.39 -0.02 2.40 16 39 H 0.10 1.33 4.04 -2.39 -0.01 1.32 16 40 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.11 1.40 6.08 -2.38 -0.01 1.39 16 Total: -1.00 -81.90 344.45 2.63 -79.27 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.24 Total: 29.65 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 6.78 Total: 17.11 kcal Atomic # 7 Polarization: -125.04 SS G_CDS: -5.38 Total: -130.43 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -0.41 Total: -38.39 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 1.88 Total: 42.79 kcal Total: -81.90 2.63 -79.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588585543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.048 kcal (2) G-P(sol) polarization free energy of solvation -81.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds