Wall clock time and date at job start Tue Mar 31 2020 12:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47032 * 2 1 4 4 C 1.50699 * 109.46469 * 119.99810 * 2 1 3 5 5 O 1.20825 * 119.99898 * 120.00194 * 4 2 1 6 6 O 1.34231 * 120.00495 * 299.99461 * 4 2 1 7 7 N 1.46494 * 109.47199 * 239.99392 * 2 1 3 8 8 C 1.34778 * 119.99720 * 125.92631 * 7 2 1 9 9 O 1.21595 * 119.99920 * 189.37183 * 8 7 2 10 10 N 1.34775 * 120.00209 * 9.37585 * 8 7 2 11 11 C 1.40194 * 120.00191 * 174.70233 * 10 8 7 12 12 C 1.40397 * 125.97226 * 0.02562 * 11 10 8 13 13 C 1.35243 * 107.86522 * 179.75572 * 12 11 10 14 14 N 1.34960 * 107.85917 * 0.42223 * 13 12 11 15 15 C 1.46501 * 125.97489 * 179.84354 * 14 13 12 16 16 C 1.50695 * 109.47303 * 124.71430 * 15 14 13 17 17 H 1.08002 * 120.00158 * 359.97438 * 16 15 14 18 18 C 1.37888 * 119.99932 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00000 * 359.72270 * 18 16 15 20 20 Si 1.86798 * 119.99675 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46912 * 179.72674 * 20 18 16 22 22 H 1.48505 * 109.47342 * 299.72335 * 20 18 16 23 23 H 1.48498 * 109.47282 * 59.72585 * 20 18 16 24 24 N 1.31206 * 125.97248 * 180.02562 * 11 10 8 25 25 C 1.46499 * 120.00340 * 305.93219 * 7 2 1 26 26 C 1.52999 * 117.49871 * 195.69504 * 25 7 2 27 27 C 1.53002 * 117.49853 * 127.07095 * 25 7 2 28 28 H 1.08993 * 109.47444 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47204 * 300.00590 * 1 2 3 30 30 H 1.09007 * 109.47006 * 60.00292 * 1 2 3 31 31 H 0.96696 * 117.00058 * 180.02562 * 6 4 2 32 32 H 0.97006 * 119.99535 * 354.70354 * 10 8 7 33 33 H 1.08002 * 126.06663 * 0.02562 * 12 11 10 34 34 H 1.08006 * 126.06884 * 180.25561 * 13 12 11 35 35 H 1.08998 * 109.47542 * 4.70632 * 15 14 13 36 36 H 1.09003 * 109.46836 * 244.71203 * 15 14 13 37 37 H 0.97006 * 119.99917 * 0.27857 * 19 18 16 38 38 H 1.08997 * 115.54914 * 341.40283 * 25 7 2 39 39 H 1.09003 * 117.50026 * 359.97438 * 26 25 7 40 40 H 1.08997 * 117.50285 * 145.02211 * 26 25 7 41 41 H 1.09002 * 117.49425 * 214.97744 * 27 25 7 42 42 H 1.08996 * 117.49995 * 359.97438 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7268 -1.6928 1.1197 6 8 1.7080 -0.2518 2.4497 7 7 2.0184 -0.6907 -1.1960 8 6 2.8887 -0.0757 -2.0212 9 8 3.1629 -0.5737 -3.0961 10 7 3.4551 1.0911 -1.6549 11 6 4.4424 1.6746 -2.4612 12 6 4.9335 1.1553 -3.6696 13 6 5.8681 2.0122 -4.1400 14 7 5.9749 3.0313 -3.2617 15 6 6.8758 4.1802 -3.3819 16 6 6.0767 5.4555 -3.3048 17 1 5.0048 5.4143 -3.1793 18 6 6.7140 6.6750 -3.3946 19 7 8.0198 6.7252 -3.5419 20 14 5.7232 8.2557 -3.2997 21 1 6.6373 9.4205 -3.4142 22 1 4.7372 8.2894 -4.4098 23 1 5.0074 8.3141 -2.0000 24 7 5.0690 2.8015 -2.2183 25 6 1.5606 -2.0498 -1.4953 26 6 2.3588 -2.8536 -2.5237 27 6 0.9758 -2.3082 -2.8853 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 2.0539 -0.7405 3.2089 32 1 3.1795 1.5271 -0.8333 33 1 4.6176 0.2370 -4.1420 34 1 6.4312 1.8995 -5.0548 35 1 7.3967 4.1351 -4.3383 36 1 7.6034 4.1578 -2.5705 37 1 8.5342 5.9043 -3.5915 38 1 1.1263 -2.5948 -0.6573 39 1 3.2243 -2.3711 -2.9780 40 1 2.4498 -3.9277 -2.3624 41 1 0.1569 -3.0236 -2.9617 42 1 0.9311 -1.4670 -3.5769 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588585544.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:52 Heat of formation + Delta-G solvation = -3.019601 kcal Electronic energy + Delta-G solvation = -27386.737492 eV Core-core repulsion = 23370.264526 eV Total energy + Delta-G solvation = -4016.472966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.62941 -41.85645 -40.92357 -38.16579 -37.20719 -36.73701 -36.05848 -35.03947 -32.73657 -31.48160 -31.01176 -28.19921 -26.17006 -25.47595 -24.35549 -23.25283 -23.11806 -22.52078 -21.74921 -20.57354 -19.30407 -19.22403 -18.80383 -18.44999 -17.82958 -17.19486 -16.91919 -16.60528 -16.43199 -15.98460 -15.83229 -15.56214 -15.14064 -14.94143 -14.52722 -14.35137 -14.20490 -13.95214 -13.81439 -13.66915 -13.23145 -13.20864 -12.69743 -12.62961 -12.56391 -12.45878 -12.36788 -11.94775 -11.87494 -11.66135 -11.63657 -11.29115 -11.01733 -10.80707 -10.69038 -9.89100 -9.70496 -9.17248 -8.77094 -6.55636 0.79842 0.96526 1.04836 1.46961 1.52264 1.58425 1.65805 1.80125 2.00178 2.23869 2.47901 2.53638 3.01635 3.02606 3.55560 3.67273 3.84505 3.91863 4.01570 4.08427 4.11341 4.20268 4.40974 4.54259 4.65477 4.72177 4.75674 4.79769 4.83206 4.87422 4.95658 5.19039 5.23187 5.40992 5.43551 5.51783 5.57466 5.59951 5.81571 5.92839 6.26597 6.38531 6.42494 6.87909 6.95408 7.19325 7.20329 8.58735 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016247 B = 0.003057 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.001250 B = 9157.279699 C =10010.540552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.141 3.859 3 H 0.130 0.870 4 C 0.470 3.530 5 O -0.533 6.533 6 O -0.502 6.502 7 N -0.575 5.575 8 C 0.717 3.283 9 O -0.567 6.567 10 N -0.640 5.640 11 C 0.285 3.715 12 C -0.287 4.287 13 C 0.057 3.943 14 N -0.342 5.342 15 C 0.260 3.740 16 C -0.622 4.622 17 H 0.047 0.953 18 C -0.019 4.019 19 N -0.924 5.924 20 Si 1.120 2.880 21 H -0.276 1.276 22 H -0.271 1.271 23 H -0.274 1.274 24 N -0.345 5.345 25 C 0.094 3.906 26 C -0.202 4.202 27 C -0.169 4.169 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.431 0.569 32 H 0.413 0.587 33 H 0.170 0.830 34 H 0.202 0.798 35 H 0.054 0.946 36 H 0.016 0.984 37 H 0.261 0.739 38 H 0.148 0.852 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.123 0.877 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.225 -17.452 8.993 26.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.035 3.965 3 H 0.148 0.852 4 C 0.311 3.689 5 O -0.422 6.422 6 O -0.315 6.315 7 N -0.310 5.310 8 C 0.419 3.581 9 O -0.444 6.444 10 N -0.294 5.294 11 C 0.030 3.970 12 C -0.318 4.318 13 C -0.091 4.091 14 N -0.124 5.124 15 C 0.140 3.860 16 C -0.660 4.660 17 H 0.065 0.935 18 C -0.219 4.219 19 N -0.560 5.560 20 Si 0.941 3.059 21 H -0.201 1.201 22 H -0.196 1.196 23 H -0.199 1.199 24 N -0.176 5.176 25 C -0.010 4.010 26 C -0.240 4.240 27 C -0.207 4.207 28 H 0.097 0.903 29 H 0.124 0.876 30 H 0.101 0.899 31 H 0.293 0.707 32 H 0.253 0.747 33 H 0.188 0.812 34 H 0.219 0.781 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.165 0.835 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.141 0.859 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.649 -15.186 8.662 24.842 hybrid contribution 0.617 -2.424 0.446 2.540 sum -17.031 -17.610 9.108 26.137 Atomic orbital electron populations 1.22110 0.87713 1.05012 1.05665 1.20909 0.99515 0.96181 0.79847 0.85221 1.23912 0.76598 0.82452 0.85936 1.90780 1.36356 1.27421 1.87615 1.84470 1.71660 1.58925 1.16428 1.46329 1.45492 1.16033 1.23123 1.15719 0.78873 0.79662 0.83884 1.90749 1.65773 1.65334 1.22499 1.41726 1.38615 1.23144 1.25881 1.19045 0.92551 0.92547 0.92868 1.21685 1.05487 1.05889 0.98752 1.23169 1.00207 0.88384 0.97387 1.48549 1.29629 1.18775 1.15480 1.19423 0.87583 0.81787 0.97169 1.22294 0.95440 0.92226 1.55992 0.93511 1.27295 0.97077 1.05394 0.92092 1.70947 1.06678 1.31449 1.46929 0.82879 0.73914 0.71322 0.77807 1.20078 1.19593 1.19935 1.77251 1.09627 1.17021 1.13724 1.21591 1.03893 0.81295 0.94171 1.23698 0.97797 0.99656 1.02815 1.23310 0.96905 1.03300 0.97216 0.90268 0.87594 0.89853 0.70678 0.74738 0.81239 0.78133 0.92818 0.96650 0.92989 0.83509 0.87743 0.87681 0.85882 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.03 71.98 0.65 -0.63 16 2 C 0.14 2.13 3.07 44.25 0.14 2.27 16 3 H 0.13 1.78 5.64 -2.39 -0.01 1.77 16 4 C 0.47 7.66 7.47 71.24 0.53 8.19 16 5 O -0.53 -12.70 16.11 21.97 0.35 -12.35 16 6 O -0.50 -4.97 13.33 -51.43 -0.69 -5.66 16 7 N -0.57 -12.46 2.44 -795.95 -1.94 -14.40 16 8 C 0.72 21.24 8.01 179.05 1.44 22.67 16 9 O -0.57 -19.44 9.25 -4.01 -0.04 -19.48 16 10 N -0.64 -20.18 5.34 -321.23 -1.72 -21.90 16 11 C 0.29 11.57 8.11 133.31 1.08 12.65 16 12 C -0.29 -11.33 9.61 22.10 0.21 -11.12 16 13 C 0.06 2.25 11.44 83.52 0.96 3.21 16 14 N -0.34 -16.21 3.67 -351.84 -1.29 -17.50 16 15 C 0.26 13.42 5.57 85.63 0.48 13.90 16 16 C -0.62 -35.35 9.24 25.60 0.24 -35.12 16 17 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 18 C -0.02 -1.06 5.46 84.66 0.46 -0.60 16 19 N -0.92 -54.11 13.65 21.45 0.29 -53.82 16 20 Si 1.12 49.40 29.90 68.60 2.05 51.46 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 24 N -0.35 -16.23 12.42 -54.44 -0.68 -16.91 16 25 C 0.09 1.83 4.74 44.99 0.21 2.04 16 26 C -0.20 -4.59 9.62 30.60 0.29 -4.30 16 27 C -0.17 -3.16 9.87 30.60 0.30 -2.86 16 28 H 0.08 0.58 7.32 -2.39 -0.02 0.57 16 29 H 0.11 0.55 8.11 -2.39 -0.02 0.53 16 30 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.43 1.13 9.10 -74.06 -0.67 0.45 16 32 H 0.41 10.75 6.31 -92.70 -0.59 10.17 16 33 H 0.17 6.45 5.93 -2.91 -0.02 6.43 16 34 H 0.20 6.28 8.06 -2.91 -0.02 6.26 16 35 H 0.05 2.66 7.94 -2.39 -0.02 2.64 16 36 H 0.02 0.85 8.00 -2.39 -0.02 0.83 16 37 H 0.26 15.11 7.22 -92.70 -0.67 14.44 16 38 H 0.15 2.27 7.39 -2.39 -0.02 2.25 16 39 H 0.10 3.15 5.29 -2.83 -0.01 3.14 16 40 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.08 1.88 7.54 -2.39 -0.02 1.86 16 Total: -1.00 -77.63 354.80 3.27 -74.36 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: -0.07 Total: 25.87 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 6.99 Total: 10.32 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -5.33 Total: -124.53 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -0.37 Total: -37.48 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.05 Total: 51.46 kcal Total: -77.63 3.27 -74.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588585544.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.342 kcal (2) G-P(sol) polarization free energy of solvation -77.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds