Wall clock time and date at job start Tue Mar 31 2020 12:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47298 * 2 1 4 4 C 1.46500 * 120.00345 * 270.00004 * 3 2 1 5 5 C 1.50694 * 109.46925 * 269.99878 * 4 3 2 6 6 H 1.07992 * 120.00318 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99844 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00140 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00210 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46773 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47213 * 119.99658 * 9 7 5 12 12 H 1.48497 * 109.47492 * 240.00009 * 9 7 5 13 13 C 1.34781 * 119.99809 * 89.99278 * 3 2 1 14 14 O 1.21579 * 119.99780 * 180.02562 * 13 3 2 15 15 N 1.34770 * 120.00544 * 0.02562 * 13 3 2 16 16 C 1.39126 * 120.00411 * 179.97438 * 15 13 3 17 17 N 1.33605 * 126.30348 * 0.11955 * 16 15 13 18 18 C 1.31348 * 109.99000 * 180.23584 * 17 16 15 19 19 N 1.34254 * 109.42974 * 359.87374 * 18 17 16 20 20 C 1.38613 * 126.30208 * 179.97438 * 16 15 13 21 21 C 1.41549 * 127.03976 * 359.94761 * 20 16 15 22 22 O 1.21706 * 120.00269 * 359.69290 * 21 20 16 23 23 O 1.34970 * 120.00127 * 179.68349 * 21 20 16 24 24 C 1.47006 * 111.36918 * 179.79689 * 19 18 17 25 25 C 1.54387 * 105.47702 * 17.09402 * 24 19 18 26 26 C 1.51739 * 140.66908 * 179.97438 * 18 17 16 27 27 H 1.08997 * 109.47371 * 299.99660 * 1 2 3 28 28 H 1.08993 * 109.47312 * 60.00164 * 1 2 3 29 29 H 1.09002 * 109.47023 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47765 * 239.99673 * 2 1 3 31 31 H 1.09002 * 109.47040 * 119.99930 * 2 1 3 32 32 H 1.09009 * 109.46277 * 29.99548 * 4 3 2 33 33 H 1.08995 * 109.47507 * 149.99136 * 4 3 2 34 34 H 0.96996 * 120.00044 * 179.97438 * 8 7 5 35 35 H 0.97008 * 119.99740 * 359.97438 * 15 13 3 36 36 H 0.96700 * 114.00087 * 0.02562 * 23 21 20 37 37 H 1.08996 * 110.24260 * 136.09651 * 24 19 18 38 38 H 1.09001 * 110.24677 * 258.09349 * 24 19 18 39 39 H 1.08995 * 110.98610 * 92.42583 * 25 24 19 40 40 H 1.09001 * 110.98321 * 216.22701 * 25 24 19 41 41 H 1.08996 * 110.47401 * 44.66225 * 26 18 17 42 42 H 1.08995 * 110.58761 * 282.09417 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7036 6 1 4.3428 1.2309 -1.0957 7 6 4.1491 2.3897 -2.8778 8 7 3.3489 3.1250 -3.6185 9 14 5.9135 2.0968 -3.4167 10 1 6.6011 1.2415 -2.4162 11 1 5.9215 1.4172 -4.7371 12 1 6.6205 3.3982 -3.5255 13 6 2.2428 2.0165 1.1673 14 8 2.6477 3.1629 1.1673 15 7 2.0186 1.3812 2.3344 16 6 2.2508 2.0369 3.5393 17 7 2.6914 3.2896 3.6860 18 6 2.8009 3.5805 4.9622 19 7 2.4296 2.5191 5.6957 20 6 2.0650 1.5117 4.8086 21 6 1.6044 0.2137 5.1352 22 8 1.3193 -0.5715 4.2501 23 8 1.4816 -0.1534 6.4282 24 6 2.5406 2.7973 7.1349 25 6 2.6241 4.3345 7.2521 26 6 3.2075 4.7224 5.8750 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6876 -2.0283 33 1 2.0955 3.1410 -1.1384 34 1 3.6749 3.5155 -4.4443 35 1 1.6952 0.4666 2.3345 36 1 1.7310 0.5365 7.0583 37 1 1.6604 2.4262 7.6597 38 1 3.4430 2.3387 7.5392 39 1 1.6347 4.7695 7.3932 40 1 3.2966 4.6285 8.0580 41 1 2.7745 5.6606 5.5280 42 1 4.2932 4.8016 5.9295 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596299542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:28 Heat of formation + Delta-G solvation = -25.515520 kcal Electronic energy + Delta-G solvation = -27816.216415 eV Core-core repulsion = 23798.767953 eV Total energy + Delta-G solvation = -4017.448462 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.84523 -39.81429 -39.58350 -37.21306 -36.38931 -35.19680 -33.97870 -32.56649 -32.23719 -30.02095 -28.81494 -28.06648 -26.85591 -23.95024 -23.19314 -22.94105 -22.04655 -21.29789 -20.90714 -18.99104 -18.52250 -17.40032 -17.16406 -16.61475 -16.31402 -16.18168 -15.78684 -15.31332 -14.91613 -14.78794 -14.22426 -14.13205 -13.84745 -13.82190 -13.65613 -13.46829 -13.08463 -12.95599 -12.51393 -12.17906 -11.98378 -11.85984 -11.70779 -11.57351 -11.13655 -10.85428 -10.75152 -10.71129 -10.56365 -10.47283 -10.09572 -10.00714 -9.55129 -9.47106 -9.06365 -8.35981 -7.99047 -7.54012 -5.96618 -4.00481 0.84331 2.04848 2.59019 2.95950 3.04495 3.26845 3.35642 3.42157 3.43210 3.48836 3.88755 4.06194 4.11559 4.13057 4.32484 4.46841 4.58408 4.65294 4.82168 4.86609 5.09028 5.32795 5.37512 5.39240 5.40298 5.60468 5.70488 5.80675 5.85609 6.12893 6.30191 6.41360 6.57636 6.78799 6.93322 7.00089 7.34550 7.49394 7.57663 7.64235 7.94749 8.04388 8.31823 8.66092 9.00840 9.34097 9.64620 11.11345 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015171 B = 0.003677 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.152842 B = 7612.362512 C = 8724.379684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 N -0.605 5.605 4 C 0.261 3.739 5 C -0.524 4.524 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.689 3.311 14 O -0.528 6.528 15 N -0.646 5.646 16 C 0.419 3.581 17 N -0.463 5.463 18 C 0.270 3.730 19 N -0.481 5.481 20 C -0.203 4.203 21 C 0.574 3.426 22 O -0.480 6.480 23 O -0.503 6.503 24 C 0.093 3.907 25 C -0.126 4.126 26 C -0.049 4.049 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.262 0.738 35 H 0.422 0.578 36 H 0.397 0.603 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.923 -0.783 26.017 26.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 N -0.341 5.341 4 C 0.142 3.858 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.726 3.274 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.390 3.610 14 O -0.399 6.399 15 N -0.300 5.300 16 C 0.183 3.817 17 N -0.188 5.188 18 C 0.006 3.994 19 N -0.172 5.172 20 C -0.313 4.313 21 C 0.419 3.581 22 O -0.367 6.367 23 O -0.310 6.310 24 C -0.028 4.028 25 C -0.164 4.164 26 C -0.088 4.088 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.264 0.736 36 H 0.250 0.750 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.869 -0.483 24.545 24.852 hybrid contribution 0.816 -0.757 0.586 1.258 sum -3.053 -1.240 25.131 25.346 Atomic orbital electron populations 1.22233 0.96584 1.01628 1.02393 1.21424 0.93750 0.84222 1.02668 1.47637 1.67127 1.13364 1.05923 1.19249 0.96241 0.93528 0.76767 1.21515 0.97005 1.31670 1.06097 0.92408 1.24916 0.97791 0.94977 0.96391 1.69945 1.35525 1.33665 1.14334 0.86445 0.84779 0.77990 0.78209 1.19871 1.21032 1.20917 1.16010 0.80029 0.85140 0.79869 1.91011 1.48729 1.15489 1.84695 1.42738 1.67656 1.17724 1.01887 1.17509 0.91826 0.88355 0.83968 1.70186 1.21967 1.12671 1.13974 1.24657 0.96567 0.90737 0.87444 1.46331 1.51022 1.12255 1.07611 1.19158 1.29866 0.93212 0.89082 1.17369 0.75064 0.84165 0.81505 1.90868 1.48678 1.53707 1.43470 1.85044 1.82125 1.46043 1.17811 1.22592 1.03956 0.98691 0.77543 1.22752 1.03885 0.92123 0.97656 1.20901 1.03067 0.94963 0.89847 0.93172 0.91799 0.91935 0.89313 0.92269 0.94634 0.93649 0.92846 0.73631 0.74976 0.88840 0.88459 0.88916 0.87414 0.87298 0.87436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.24 37.15 0.38 -2.25 16 2 C 0.10 1.88 5.89 -4.05 -0.02 1.85 16 3 N -0.60 -13.95 2.46 -180.81 -0.44 -14.40 16 4 C 0.26 7.11 5.16 -5.20 -0.03 7.09 16 5 C -0.52 -15.40 9.39 -34.44 -0.32 -15.72 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 9 Si 0.90 22.54 29.54 -169.99 -5.02 17.52 16 10 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 13 C 0.69 16.43 8.24 -86.92 -0.72 15.71 16 14 O -0.53 -14.72 14.63 5.30 0.08 -14.64 16 15 N -0.65 -12.89 5.24 -15.71 -0.08 -12.97 16 16 C 0.42 7.79 7.64 -154.06 -1.18 6.62 16 17 N -0.46 -8.77 9.43 -9.16 -0.09 -8.86 16 18 C 0.27 3.43 8.54 -154.91 -1.32 2.11 16 19 N -0.48 -4.92 3.55 -109.18 -0.39 -5.31 16 20 C -0.20 -2.92 6.91 -83.16 -0.57 -3.49 16 21 C 0.57 8.12 8.18 31.99 0.26 8.38 16 22 O -0.48 -8.23 15.87 -19.42 -0.31 -8.54 16 23 O -0.50 -5.34 13.61 -41.23 -0.56 -5.90 16 24 C 0.09 0.34 6.40 -3.04 -0.02 0.32 16 25 C -0.13 -0.29 7.18 -25.21 -0.18 -0.47 16 26 C -0.05 -0.31 6.86 -26.58 -0.18 -0.49 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.60 8.07 -51.93 -0.42 1.18 16 31 H 0.06 0.97 6.36 -51.93 -0.33 0.64 16 32 H 0.04 0.96 8.07 -51.92 -0.42 0.54 16 33 H 0.05 1.39 7.42 -51.93 -0.39 1.00 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.42 7.64 4.57 -40.82 -0.19 7.46 16 36 H 0.40 2.16 6.16 45.56 0.28 2.44 16 37 H 0.09 0.12 7.29 -51.93 -0.38 -0.26 16 38 H 0.10 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 40 H 0.11 -0.04 8.14 -51.93 -0.42 -0.46 16 41 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 354.21 15.07 5.34 5.34 Total: -1.00 -40.79 354.21 -9.51 -50.30 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.76 Total: 2.54 kcal Atomic # 6 Polarization: 25.35 SS G_CDS: -4.00 Total: 21.35 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -0.26 Total: -67.95 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.79 Total: -29.08 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -40.79 -9.51 -50.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596299542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.781 kcal (2) G-P(sol) polarization free energy of solvation -40.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds