Wall clock time and date at job start Tue Mar 31 2020 12:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47298 * 2 1 4 4 C 1.46500 * 120.00345 * 270.00004 * 3 2 1 5 5 C 1.50694 * 109.46925 * 269.99878 * 4 3 2 6 6 H 1.07992 * 120.00318 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99844 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00140 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00210 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46773 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47213 * 119.99658 * 9 7 5 12 12 H 1.48497 * 109.47492 * 240.00009 * 9 7 5 13 13 C 1.34781 * 119.99809 * 89.99278 * 3 2 1 14 14 O 1.21579 * 119.99780 * 180.02562 * 13 3 2 15 15 N 1.34770 * 120.00544 * 0.02562 * 13 3 2 16 16 C 1.39126 * 120.00411 * 179.97438 * 15 13 3 17 17 N 1.33605 * 126.30348 * 0.11955 * 16 15 13 18 18 C 1.31348 * 109.99000 * 180.23584 * 17 16 15 19 19 N 1.34254 * 109.42974 * 359.87374 * 18 17 16 20 20 C 1.38613 * 126.30208 * 179.97438 * 16 15 13 21 21 C 1.41549 * 127.03976 * 359.94761 * 20 16 15 22 22 O 1.21706 * 120.00269 * 359.69290 * 21 20 16 23 23 O 1.34970 * 120.00127 * 179.68349 * 21 20 16 24 24 C 1.47006 * 111.36918 * 179.79689 * 19 18 17 25 25 C 1.54387 * 105.47702 * 17.09402 * 24 19 18 26 26 C 1.51739 * 140.66908 * 179.97438 * 18 17 16 27 27 H 1.08997 * 109.47371 * 299.99660 * 1 2 3 28 28 H 1.08993 * 109.47312 * 60.00164 * 1 2 3 29 29 H 1.09002 * 109.47023 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47765 * 239.99673 * 2 1 3 31 31 H 1.09002 * 109.47040 * 119.99930 * 2 1 3 32 32 H 1.09009 * 109.46277 * 29.99548 * 4 3 2 33 33 H 1.08995 * 109.47507 * 149.99136 * 4 3 2 34 34 H 0.96996 * 120.00044 * 179.97438 * 8 7 5 35 35 H 0.97008 * 119.99740 * 359.97438 * 15 13 3 36 36 H 0.96700 * 114.00087 * 0.02562 * 23 21 20 37 37 H 1.08996 * 110.24260 * 136.09651 * 24 19 18 38 38 H 1.09001 * 110.24677 * 258.09349 * 24 19 18 39 39 H 1.08995 * 110.98610 * 92.42583 * 25 24 19 40 40 H 1.09001 * 110.98321 * 216.22701 * 25 24 19 41 41 H 1.08996 * 110.47401 * 44.66225 * 26 18 17 42 42 H 1.08995 * 110.58761 * 282.09417 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7036 6 1 4.3428 1.2309 -1.0957 7 6 4.1491 2.3897 -2.8778 8 7 3.3489 3.1250 -3.6185 9 14 5.9135 2.0968 -3.4167 10 1 6.6011 1.2415 -2.4162 11 1 5.9215 1.4172 -4.7371 12 1 6.6205 3.3982 -3.5255 13 6 2.2428 2.0165 1.1673 14 8 2.6477 3.1629 1.1673 15 7 2.0186 1.3812 2.3344 16 6 2.2508 2.0369 3.5393 17 7 2.6914 3.2896 3.6860 18 6 2.8009 3.5805 4.9622 19 7 2.4296 2.5191 5.6957 20 6 2.0650 1.5117 4.8086 21 6 1.6044 0.2137 5.1352 22 8 1.3193 -0.5715 4.2501 23 8 1.4816 -0.1534 6.4282 24 6 2.5406 2.7973 7.1349 25 6 2.6241 4.3345 7.2521 26 6 3.2075 4.7224 5.8750 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6876 -2.0283 33 1 2.0955 3.1410 -1.1384 34 1 3.6749 3.5155 -4.4443 35 1 1.6952 0.4666 2.3345 36 1 1.7310 0.5365 7.0583 37 1 1.6604 2.4262 7.6597 38 1 3.4430 2.3387 7.5392 39 1 1.6347 4.7695 7.3932 40 1 3.2966 4.6285 8.0580 41 1 2.7745 5.6606 5.5280 42 1 4.2932 4.8016 5.9295 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596299542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:27 Heat of formation + Delta-G solvation = -55.134250 kcal Electronic energy + Delta-G solvation = -27817.500780 eV Core-core repulsion = 23798.767953 eV Total energy + Delta-G solvation = -4018.732827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.83829 -41.28974 -40.84360 -38.23489 -37.42637 -36.89131 -35.53465 -34.62745 -33.14305 -31.68738 -29.96746 -28.89557 -28.51284 -25.53831 -24.66941 -24.26803 -22.90490 -22.44376 -22.05588 -20.38302 -19.59864 -18.84014 -18.52921 -18.15491 -17.85368 -17.28409 -16.80354 -16.64389 -16.48255 -16.19177 -15.86181 -15.29453 -15.06086 -14.93955 -14.60441 -14.44612 -14.39577 -14.17524 -13.76652 -13.44381 -13.32321 -13.10124 -12.83236 -12.74486 -12.54427 -12.49742 -12.45856 -12.23876 -12.03176 -11.89560 -11.71808 -11.45970 -11.41908 -10.72735 -10.64279 -10.63477 -9.59535 -9.06591 -8.21453 -6.36079 -0.25681 1.12089 1.35738 1.38411 1.50304 1.53679 1.68585 1.76190 2.26212 2.35649 2.45349 2.60600 2.94916 3.07865 3.30383 3.55680 3.63369 3.92597 3.98242 4.07495 4.29446 4.34578 4.41126 4.50575 4.56332 4.78157 4.83726 4.88125 4.92647 4.97121 5.08850 5.16365 5.16882 5.28289 5.50922 5.53558 5.59418 5.81798 5.92136 6.06471 6.07271 6.48250 6.67959 6.71909 7.05116 7.30259 7.58114 8.85727 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015171 B = 0.003677 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.152842 B = 7612.362512 C = 8724.379684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 N -0.611 5.611 4 C 0.280 3.720 5 C -0.544 4.544 6 H 0.048 0.952 7 C 0.010 3.990 8 N -0.926 5.926 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.266 1.266 12 H -0.280 1.280 13 C 0.688 3.312 14 O -0.582 6.582 15 N -0.641 5.641 16 C 0.364 3.636 17 N -0.535 5.535 18 C 0.259 3.741 19 N -0.461 5.461 20 C -0.184 4.184 21 C 0.583 3.417 22 O -0.513 6.513 23 O -0.489 6.489 24 C 0.075 3.925 25 C -0.107 4.107 26 C -0.051 4.051 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.032 0.968 33 H 0.000 1.000 34 H 0.268 0.732 35 H 0.428 0.572 36 H 0.420 0.580 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.101 0.899 40 H 0.148 0.852 41 H 0.109 0.891 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.273 -1.669 29.712 29.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.346 5.346 4 C 0.159 3.841 5 C -0.583 4.583 6 H 0.066 0.934 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.190 1.190 12 H -0.205 1.205 13 C 0.388 3.612 14 O -0.457 6.457 15 N -0.295 5.295 16 C 0.130 3.870 17 N -0.260 5.260 18 C -0.006 4.006 19 N -0.149 5.149 20 C -0.296 4.296 21 C 0.428 3.572 22 O -0.403 6.403 23 O -0.299 6.299 24 C -0.042 4.042 25 C -0.145 4.145 26 C -0.090 4.090 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.018 0.982 34 H 0.077 0.923 35 H 0.271 0.729 36 H 0.278 0.722 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.120 0.880 40 H 0.166 0.834 41 H 0.127 0.873 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.239 -1.388 28.391 28.608 hybrid contribution 0.586 -0.440 -0.321 0.800 sum -2.653 -1.828 28.070 28.254 Atomic orbital electron populations 1.22147 0.94294 1.03727 1.01604 1.21703 0.95605 0.81535 1.03532 1.47534 1.67412 1.15027 1.04636 1.18703 0.95518 0.91345 0.78525 1.21716 0.97837 1.32166 1.06558 0.93367 1.25825 1.02437 0.94368 0.96242 1.70054 1.37621 1.34110 1.14776 0.85347 0.78933 0.78017 0.78335 1.19657 1.19041 1.20531 1.16145 0.79478 0.84659 0.80874 1.90947 1.51203 1.17821 1.85757 1.42295 1.68017 1.17732 1.01494 1.17909 0.95139 0.89425 0.84540 1.69979 1.24071 1.13703 1.18217 1.25668 0.95440 0.93110 0.86376 1.46763 1.48111 1.10083 1.09970 1.19064 1.28147 0.93912 0.88511 1.17264 0.74174 0.83411 0.82305 1.90844 1.49947 1.54462 1.45016 1.85024 1.81463 1.46926 1.16526 1.23354 1.07109 1.00281 0.73474 1.22867 1.05136 0.90638 0.95823 1.21289 1.04227 0.92804 0.90687 0.93564 0.92948 0.88268 0.89272 0.90461 0.94967 0.98203 0.92301 0.72924 0.72193 0.85412 0.85393 0.88006 0.83410 0.87299 0.85984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.96 10.24 71.98 0.74 -4.22 16 2 C 0.10 3.68 5.89 86.38 0.51 4.19 16 3 N -0.61 -29.97 2.46 -844.23 -2.07 -32.04 16 4 C 0.28 16.29 5.16 85.63 0.44 16.73 16 5 C -0.54 -33.42 9.39 25.60 0.24 -33.18 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.62 5.46 84.65 0.46 1.08 16 8 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 9 Si 0.97 47.07 29.54 68.60 2.03 49.09 16 10 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 13 C 0.69 35.21 8.24 179.06 1.48 36.68 16 14 O -0.58 -35.19 14.63 -3.96 -0.06 -35.25 16 15 N -0.64 -27.08 5.24 -321.89 -1.69 -28.76 16 16 C 0.36 14.17 7.64 132.53 1.01 15.19 16 17 N -0.53 -21.35 9.43 -182.88 -1.72 -23.07 16 18 C 0.26 6.47 8.54 138.46 1.18 7.65 16 19 N -0.46 -8.39 3.55 -499.33 -1.77 -10.17 16 20 C -0.18 -5.16 6.91 38.89 0.27 -4.89 16 21 C 0.58 15.61 8.18 68.64 0.56 16.17 16 22 O -0.51 -17.36 15.87 19.16 0.30 -17.06 16 23 O -0.49 -8.70 13.61 -58.88 -0.80 -9.51 16 24 C 0.08 0.17 6.40 86.75 0.55 0.72 16 25 C -0.11 0.04 7.18 31.58 0.23 0.27 16 26 C -0.05 -0.53 6.86 30.69 0.21 -0.32 16 27 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.09 3.29 8.07 -2.39 -0.02 3.27 16 31 H 0.08 2.59 6.36 -2.39 -0.02 2.57 16 32 H 0.03 1.86 8.07 -2.38 -0.02 1.84 16 33 H 0.00 -0.01 7.42 -2.39 -0.02 -0.03 16 34 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 35 H 0.43 16.19 4.57 -92.70 -0.42 15.77 16 36 H 0.42 2.53 6.16 -74.06 -0.46 2.07 16 37 H 0.13 -0.48 7.29 -2.39 -0.02 -0.50 16 38 H 0.13 -0.34 8.14 -2.39 -0.02 -0.35 16 39 H 0.10 -0.14 8.14 -2.39 -0.02 -0.16 16 40 H 0.15 -1.10 8.14 -2.39 -0.02 -1.12 16 41 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -98.42 354.21 2.58 -95.83 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.20 Total: 12.36 kcal Atomic # 6 Polarization: 48.20 SS G_CDS: 7.88 Total: 56.08 kcal Atomic # 7 Polarization: -144.58 SS G_CDS: -6.97 Total: -151.56 kcal Atomic # 8 Polarization: -61.25 SS G_CDS: -0.56 Total: -61.81 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.09 kcal Total: -98.42 2.58 -95.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596299542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.697 kcal (2) G-P(sol) polarization free energy of solvation -98.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds