Wall clock time and date at job start Tue Mar 31 2020 13:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35694 * 117.00216 * 2 1 4 4 C 1.39645 * 120.97641 * 264.96483 * 3 2 1 5 5 C 1.47941 * 120.56870 * 0.04164 * 4 3 2 6 6 O 1.21442 * 120.00148 * 0.23817 * 5 4 3 7 7 O 1.34703 * 119.99710 * 180.23516 * 5 4 3 8 8 N 1.33571 * 118.85763 * 180.27846 * 4 3 2 9 9 C 1.31345 * 120.98367 * 359.74035 * 8 4 3 10 10 N 1.32009 * 122.19192 * 359.97438 * 9 8 4 11 11 C 1.32587 * 121.01476 * 0.02562 * 10 9 8 12 12 N 1.38637 * 120.54773 * 179.97438 * 11 10 9 13 13 C 1.46952 * 111.00039 * 294.47304 * 12 11 10 14 14 C 1.53049 * 109.36617 * 183.18908 * 13 12 11 15 15 N 1.46949 * 109.36272 * 301.60058 * 14 13 12 16 16 C 1.46903 * 110.99980 * 183.18895 * 15 14 13 17 17 C 1.50700 * 109.47444 * 169.99738 * 16 15 14 18 18 H 1.08003 * 119.99989 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00387 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99588 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00246 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47053 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47314 * 119.99908 * 21 19 17 24 24 H 1.48504 * 109.47067 * 240.00199 * 21 19 17 25 25 C 1.46956 * 110.88544 * 59.31787 * 15 14 13 26 26 C 1.46958 * 110.99873 * 58.27396 * 12 11 10 27 27 H 1.09001 * 109.46916 * 299.55482 * 1 2 3 28 28 H 1.09003 * 109.46478 * 59.54713 * 1 2 3 29 29 H 1.09001 * 109.47337 * 179.54544 * 1 2 3 30 30 H 0.96703 * 116.99567 * 179.97438 * 7 5 4 31 31 H 1.08005 * 118.90656 * 180.02562 * 9 8 4 32 32 H 1.08997 * 109.49092 * 63.21788 * 13 12 11 33 33 H 1.09003 * 109.50718 * 303.17061 * 13 12 11 34 34 H 1.09004 * 109.48810 * 181.62847 * 14 13 12 35 35 H 1.09004 * 109.48535 * 61.56900 * 14 13 12 36 36 H 1.08998 * 109.46849 * 290.00201 * 16 15 14 37 37 H 1.09004 * 109.46936 * 49.99984 * 16 15 14 38 38 H 0.97001 * 119.99440 * 180.02562 * 20 19 17 39 39 H 1.09002 * 109.48564 * 60.64591 * 25 15 14 40 40 H 1.09000 * 109.49340 * 180.71033 * 25 15 14 41 41 H 1.08999 * 109.48861 * 296.77574 * 26 12 11 42 42 H 1.09003 * 109.49084 * 56.82472 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 2.4651 1.8017 -1.1927 5 6 2.2459 1.1222 -2.4884 6 8 1.6928 0.0416 -2.5215 7 8 2.6599 1.7023 -3.6315 8 7 3.0723 2.9904 -1.1430 9 6 3.2706 3.6010 0.0029 10 7 2.8852 3.0804 1.1531 11 6 2.2747 1.9044 1.2004 12 7 1.8746 1.3664 2.4138 13 6 3.0352 1.0478 3.2570 14 6 2.5561 0.3848 4.5505 15 7 1.6338 1.2904 5.2495 16 6 1.2098 0.7204 6.5354 17 6 0.4705 1.7664 7.3293 18 1 0.3293 2.7556 6.9195 19 6 -0.0265 1.4603 8.5784 20 7 0.1450 0.2555 9.0772 21 14 -0.9435 2.7567 9.5621 22 1 -1.0000 4.0203 8.7842 23 1 -2.3235 2.2835 9.8394 24 1 -0.2355 2.9971 10.8452 25 6 0.4731 1.6091 4.4064 26 6 0.9522 2.2721 3.1129 27 1 -0.3633 0.5069 0.8940 28 1 -0.3632 0.5209 -0.8860 29 1 -0.3634 -1.0276 -0.0082 30 1 2.4949 1.2200 -4.4533 31 1 3.7647 4.5614 0.0040 32 1 3.5737 1.9648 3.4961 33 1 3.6972 0.3663 2.7226 34 1 3.4132 0.1738 5.1901 35 1 2.0414 -0.5463 4.3129 36 1 0.5535 -0.1313 6.3565 37 1 2.0864 0.3924 7.0941 38 1 -0.2051 0.0401 9.9558 39 1 -0.0653 0.6920 4.1672 40 1 -0.1885 2.2907 4.9410 41 1 1.4670 3.2030 3.3505 42 1 0.0953 2.4833 2.4731 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599330808.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:16 Heat of formation + Delta-G solvation = -38.729930 kcal Electronic energy + Delta-G solvation = -27670.473355 eV Core-core repulsion = 23652.451874 eV Total energy + Delta-G solvation = -4018.021482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.93196 -40.25825 -38.82328 -38.44901 -36.41249 -35.69706 -33.44475 -32.46580 -31.15599 -30.64969 -28.13585 -27.44907 -26.23156 -24.96270 -23.71504 -23.24118 -22.31609 -21.42793 -19.54182 -19.15476 -18.18096 -17.95268 -17.76450 -16.60714 -16.34776 -16.30761 -15.64983 -15.38236 -14.94669 -14.71655 -14.40867 -14.27418 -14.18449 -14.00314 -13.72487 -13.55407 -13.12517 -12.57376 -12.19423 -11.99210 -11.90793 -11.61744 -11.40710 -11.27332 -11.20973 -10.94118 -10.89451 -10.79781 -10.70908 -10.53439 -10.46039 -9.86566 -9.61393 -9.46914 -9.21082 -8.74890 -8.46679 -7.31875 -6.06116 -4.07760 -0.13293 0.35858 2.02266 2.24068 3.04784 3.20370 3.28678 3.36441 3.40686 3.46805 3.65252 3.88078 4.39012 4.46647 4.55815 4.82369 4.94244 5.10986 5.20387 5.28962 5.29700 5.37150 5.49506 5.52112 5.61180 5.70057 5.78431 5.86038 5.95335 6.01081 6.24597 6.35045 6.46764 6.54945 6.77737 6.82961 7.12170 7.24132 7.29941 7.38694 7.59533 7.75210 8.02335 8.13061 8.48493 8.99886 9.56816 11.04761 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026841 B = 0.002813 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.946514 B = 9952.083796 C =10254.897401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.297 6.297 3 C 0.092 3.908 4 C 0.113 3.887 5 C 0.541 3.459 6 O -0.477 6.477 7 O -0.492 6.492 8 N -0.467 5.467 9 C 0.296 3.704 10 N -0.507 5.507 11 C 0.340 3.660 12 N -0.485 5.485 13 C 0.069 3.931 14 C 0.058 3.942 15 N -0.537 5.537 16 C 0.194 3.806 17 C -0.508 4.508 18 H 0.064 0.936 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.069 3.931 26 C 0.062 3.938 27 H 0.055 0.945 28 H 0.041 0.959 29 H 0.102 0.898 30 H 0.415 0.585 31 H 0.209 0.791 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.035 0.965 36 H -0.007 1.007 37 H 0.031 0.969 38 H 0.261 0.739 39 H 0.032 0.968 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.891 3.076 -23.082 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.210 6.210 3 C 0.039 3.961 4 C -0.031 4.031 5 C 0.381 3.619 6 O -0.362 6.362 7 O -0.303 6.303 8 N -0.184 5.184 9 C 0.007 3.993 10 N -0.227 5.227 11 C 0.098 3.902 12 N -0.210 5.210 13 C -0.057 4.057 14 C -0.071 4.071 15 N -0.263 5.263 16 C 0.069 3.931 17 C -0.546 4.546 18 H 0.082 0.918 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.060 4.060 26 C -0.065 4.065 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.120 0.880 30 H 0.274 0.726 31 H 0.225 0.775 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.011 0.989 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.111 0.889 41 H 0.081 0.919 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.256 3.491 -22.598 23.259 hybrid contribution -1.087 -0.344 0.115 1.146 sum 3.169 3.147 -22.483 22.922 Atomic orbital electron populations 1.22995 0.76913 1.04196 1.00368 1.85990 1.20815 1.20826 1.93351 1.20173 0.97301 0.87933 0.90647 1.20820 0.99571 0.91872 0.90886 1.20088 0.75560 0.82554 0.83726 1.90983 1.38174 1.19921 1.87093 1.84667 1.75749 1.52826 1.17013 1.68478 1.12076 1.06692 1.31203 1.24894 0.93729 0.99321 0.81382 1.68621 1.09912 1.12331 1.31792 1.20979 0.89494 0.86970 0.92748 1.60322 1.17025 1.41847 1.01768 1.22274 0.89909 1.00567 0.92960 1.22070 0.97827 0.94374 0.92828 1.62301 1.15220 1.43787 1.04952 1.19716 0.95445 0.94117 0.83817 1.21177 1.34365 0.98108 1.00997 0.91825 1.24991 0.96461 0.95502 0.97650 1.69970 1.46396 1.19513 1.17838 0.86452 0.79318 0.81700 0.80012 1.19657 1.21125 1.21009 1.21999 0.93502 0.99632 0.90819 1.22393 0.94353 0.94611 0.95123 0.92614 0.94000 0.87981 0.72599 0.77468 0.92192 0.90922 0.90245 0.94681 0.98912 0.95057 0.92942 0.95009 0.88854 0.91913 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.54 10.72 101.05 1.08 1.62 16 2 O -0.30 -4.07 8.61 -40.14 -0.35 -4.42 16 3 C 0.09 1.22 5.82 -38.16 -0.22 0.99 16 4 C 0.11 1.38 6.79 -82.61 -0.56 0.82 16 5 C 0.54 6.00 8.33 34.71 0.29 6.29 16 6 O -0.48 -6.12 15.58 -26.38 -0.41 -6.53 16 7 O -0.49 -3.95 13.28 -40.50 -0.54 -4.49 16 8 N -0.47 -5.31 10.24 -11.18 -0.11 -5.43 16 9 C 0.30 3.06 12.26 -92.35 -1.13 1.93 16 10 N -0.51 -6.45 9.79 -13.66 -0.13 -6.58 16 11 C 0.34 4.65 5.38 -154.65 -0.83 3.81 16 12 N -0.49 -7.18 4.51 -172.63 -0.78 -7.96 16 13 C 0.07 1.05 5.48 -3.77 -0.02 1.03 16 14 C 0.06 1.02 5.61 -3.77 -0.02 1.00 16 15 N -0.54 -11.17 4.70 -235.91 -1.11 -12.28 16 16 C 0.19 4.90 4.72 -4.97 -0.02 4.88 16 17 C -0.51 -13.85 8.47 -34.44 -0.29 -14.15 16 18 H 0.06 1.72 7.13 -52.48 -0.37 1.34 16 19 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 21 Si 0.90 21.24 29.54 -169.99 -5.02 16.21 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.07 1.28 5.43 -3.77 -0.02 1.26 16 26 C 0.06 0.94 5.41 -3.77 -0.02 0.92 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.42 8.00 -51.93 -0.42 0.01 16 29 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.42 1.15 9.11 45.56 0.42 1.57 16 31 H 0.21 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 33 H 0.07 1.01 8.13 -51.93 -0.42 0.58 16 34 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 37 H 0.03 0.85 8.03 -51.93 -0.42 0.43 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 1.84 6.79 -51.93 -0.35 1.49 16 41 H 0.06 1.02 7.93 -51.93 -0.41 0.60 16 42 H 0.07 0.93 8.13 -51.93 -0.42 0.50 16 LS Contribution 357.17 15.07 5.38 5.38 Total: -1.00 -32.81 357.17 -9.11 -41.92 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -4.91 Total: -2.17 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: -1.87 Total: 11.86 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -1.40 Total: -57.77 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -1.29 Total: -15.44 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.81 -9.11 -41.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599330808.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.194 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds