Wall clock time and date at job start Tue Mar 31 2020 13:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35694 * 117.00216 * 2 1 4 4 C 1.39645 * 120.97641 * 264.96483 * 3 2 1 5 5 C 1.47941 * 120.56870 * 0.04164 * 4 3 2 6 6 O 1.21442 * 120.00148 * 0.23817 * 5 4 3 7 7 O 1.34703 * 119.99710 * 180.23516 * 5 4 3 8 8 N 1.33571 * 118.85763 * 180.27846 * 4 3 2 9 9 C 1.31345 * 120.98367 * 359.74035 * 8 4 3 10 10 N 1.32009 * 122.19192 * 359.97438 * 9 8 4 11 11 C 1.32587 * 121.01476 * 0.02562 * 10 9 8 12 12 N 1.38637 * 120.54773 * 179.97438 * 11 10 9 13 13 C 1.46952 * 111.00039 * 294.47304 * 12 11 10 14 14 C 1.53049 * 109.36617 * 183.18908 * 13 12 11 15 15 N 1.46949 * 109.36272 * 301.60058 * 14 13 12 16 16 C 1.46903 * 110.99980 * 183.18895 * 15 14 13 17 17 C 1.50700 * 109.47444 * 169.99738 * 16 15 14 18 18 H 1.08003 * 119.99989 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00387 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99588 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00246 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47053 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47314 * 119.99908 * 21 19 17 24 24 H 1.48504 * 109.47067 * 240.00199 * 21 19 17 25 25 C 1.46956 * 110.88544 * 59.31787 * 15 14 13 26 26 C 1.46958 * 110.99873 * 58.27396 * 12 11 10 27 27 H 1.09001 * 109.46916 * 299.55482 * 1 2 3 28 28 H 1.09003 * 109.46478 * 59.54713 * 1 2 3 29 29 H 1.09001 * 109.47337 * 179.54544 * 1 2 3 30 30 H 0.96703 * 116.99567 * 179.97438 * 7 5 4 31 31 H 1.08005 * 118.90656 * 180.02562 * 9 8 4 32 32 H 1.08997 * 109.49092 * 63.21788 * 13 12 11 33 33 H 1.09003 * 109.50718 * 303.17061 * 13 12 11 34 34 H 1.09004 * 109.48810 * 181.62847 * 14 13 12 35 35 H 1.09004 * 109.48535 * 61.56900 * 14 13 12 36 36 H 1.08998 * 109.46849 * 290.00201 * 16 15 14 37 37 H 1.09004 * 109.46936 * 49.99984 * 16 15 14 38 38 H 0.97001 * 119.99440 * 180.02562 * 20 19 17 39 39 H 1.09002 * 109.48564 * 60.64591 * 25 15 14 40 40 H 1.09000 * 109.49340 * 180.71033 * 25 15 14 41 41 H 1.08999 * 109.48861 * 296.77574 * 26 12 11 42 42 H 1.09003 * 109.49084 * 56.82472 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 2.4651 1.8017 -1.1927 5 6 2.2459 1.1222 -2.4884 6 8 1.6928 0.0416 -2.5215 7 8 2.6599 1.7023 -3.6315 8 7 3.0723 2.9904 -1.1430 9 6 3.2706 3.6010 0.0029 10 7 2.8852 3.0804 1.1531 11 6 2.2747 1.9044 1.2004 12 7 1.8746 1.3664 2.4138 13 6 3.0352 1.0478 3.2570 14 6 2.5561 0.3848 4.5505 15 7 1.6338 1.2904 5.2495 16 6 1.2098 0.7204 6.5354 17 6 0.4705 1.7664 7.3293 18 1 0.3293 2.7556 6.9195 19 6 -0.0265 1.4603 8.5784 20 7 0.1450 0.2555 9.0772 21 14 -0.9435 2.7567 9.5621 22 1 -1.0000 4.0203 8.7842 23 1 -2.3235 2.2835 9.8394 24 1 -0.2355 2.9971 10.8452 25 6 0.4731 1.6091 4.4064 26 6 0.9522 2.2721 3.1129 27 1 -0.3633 0.5069 0.8940 28 1 -0.3632 0.5209 -0.8860 29 1 -0.3634 -1.0276 -0.0082 30 1 2.4949 1.2200 -4.4533 31 1 3.7647 4.5614 0.0040 32 1 3.5737 1.9648 3.4961 33 1 3.6972 0.3663 2.7226 34 1 3.4132 0.1738 5.1901 35 1 2.0414 -0.5463 4.3129 36 1 0.5535 -0.1313 6.3565 37 1 2.0864 0.3924 7.0941 38 1 -0.2051 0.0401 9.9558 39 1 -0.0653 0.6920 4.1672 40 1 -0.1885 2.2907 4.9410 41 1 1.4670 3.2030 3.3505 42 1 0.0953 2.4833 2.4731 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599330808.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:15 Heat of formation + Delta-G solvation = -62.865026 kcal Electronic energy + Delta-G solvation = -27671.519932 eV Core-core repulsion = 23652.451874 eV Total energy + Delta-G solvation = -4019.068058 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.86660 -41.12554 -40.08885 -39.38388 -37.18268 -37.11801 -34.89367 -34.06825 -32.22484 -32.03188 -29.78731 -28.31574 -27.56604 -26.32547 -24.72663 -24.58736 -23.68296 -22.83971 -20.87563 -20.05944 -19.16202 -18.93919 -18.57798 -18.47941 -17.47677 -17.39505 -16.70964 -16.56234 -16.15362 -16.06827 -15.91281 -15.49337 -15.30631 -15.16304 -15.11270 -14.67530 -14.45538 -13.99883 -13.50235 -13.42553 -13.14943 -12.81152 -12.71868 -12.63926 -12.49540 -12.33870 -12.29597 -12.18412 -12.12869 -11.82004 -11.76975 -11.64230 -11.22590 -10.61992 -10.58534 -10.41546 -9.89607 -9.06341 -8.19652 -6.29506 -1.04182 -0.58074 1.17826 1.42270 1.43340 1.44935 1.56448 2.14774 2.20783 2.41212 2.54329 2.85398 2.92429 3.12758 3.23249 3.56882 3.60523 3.89133 4.06198 4.17812 4.23999 4.29074 4.30479 4.40551 4.43435 4.52820 4.68659 4.72928 4.80751 4.89103 4.96393 5.00571 5.20822 5.25260 5.25617 5.43543 5.56252 5.64964 5.75321 6.04520 6.15161 6.29612 6.58303 6.61702 6.84235 6.86483 7.40360 8.91781 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026841 B = 0.002813 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.946514 B = 9952.083796 C =10254.897401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.314 6.314 3 C 0.082 3.918 4 C 0.111 3.889 5 C 0.546 3.454 6 O -0.499 6.499 7 O -0.484 6.484 8 N -0.465 5.465 9 C 0.303 3.697 10 N -0.518 5.518 11 C 0.330 3.670 12 N -0.489 5.489 13 C 0.081 3.919 14 C 0.059 3.941 15 N -0.543 5.543 16 C 0.210 3.790 17 C -0.520 4.520 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.935 5.935 21 Si 0.969 3.031 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.280 1.280 25 C 0.073 3.927 26 C 0.077 3.923 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.113 0.887 30 H 0.438 0.562 31 H 0.247 0.753 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.028 0.972 36 H -0.036 1.036 37 H 0.006 0.994 38 H 0.264 0.736 39 H 0.024 0.976 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.077 4.866 -24.843 25.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.227 6.227 3 C 0.030 3.970 4 C -0.034 4.034 5 C 0.387 3.613 6 O -0.385 6.385 7 O -0.298 6.298 8 N -0.183 5.183 9 C 0.015 3.985 10 N -0.238 5.238 11 C 0.088 3.912 12 N -0.213 5.213 13 C -0.045 4.045 14 C -0.069 4.069 15 N -0.268 5.268 16 C 0.084 3.916 17 C -0.559 4.559 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.576 5.576 21 Si 0.793 3.207 22 H -0.185 1.185 23 H -0.205 1.205 24 H -0.206 1.206 25 C -0.056 4.056 26 C -0.049 4.049 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.131 0.869 30 H 0.301 0.699 31 H 0.263 0.737 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.046 0.954 36 H -0.019 1.019 37 H 0.024 0.976 38 H 0.073 0.927 39 H 0.042 0.958 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.455 5.296 -24.415 25.377 hybrid contribution -1.087 -0.895 0.527 1.503 sum 3.368 4.401 -23.887 24.522 Atomic orbital electron populations 1.23101 0.75933 1.05068 1.00496 1.85965 1.21936 1.21367 1.93444 1.20210 0.97875 0.88019 0.90892 1.21014 0.99078 0.92066 0.91236 1.19916 0.75188 0.82081 0.84135 1.90978 1.39285 1.20829 1.87455 1.84614 1.74945 1.52837 1.17383 1.68581 1.11816 1.06327 1.31563 1.25657 0.92505 1.00048 0.80328 1.68629 1.10198 1.11963 1.32978 1.20825 0.90612 0.87703 0.92029 1.60200 1.16866 1.42124 1.02129 1.22109 0.90153 1.00455 0.91796 1.22105 0.97014 0.93859 0.93965 1.62214 1.16301 1.44054 1.04256 1.19350 0.93497 0.92920 0.85876 1.21473 1.34485 0.98411 1.01494 0.91702 1.25903 0.97298 0.97629 0.98815 1.70097 1.47503 1.21571 1.18389 0.85342 0.77905 0.79141 0.78278 1.18548 1.20521 1.20601 1.21946 0.92613 0.99148 0.91883 1.22174 0.95228 0.93777 0.93762 0.92973 0.93270 0.86857 0.69883 0.73703 0.92506 0.89264 0.90140 0.95370 1.01873 0.97612 0.92721 0.95776 0.90338 0.92467 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.00 10.72 113.37 1.21 2.21 16 2 O -0.31 -8.33 8.61 -69.71 -0.60 -8.93 16 3 C 0.08 2.06 5.82 23.19 0.13 2.20 16 4 C 0.11 2.50 6.79 41.79 0.28 2.79 16 5 C 0.55 11.09 8.33 70.39 0.59 11.67 16 6 O -0.50 -12.11 15.58 26.87 0.42 -11.69 16 7 O -0.48 -6.52 13.28 -56.13 -0.75 -7.27 16 8 N -0.47 -9.35 10.24 -189.30 -1.94 -11.29 16 9 C 0.30 5.38 12.26 180.95 2.22 7.59 16 10 N -0.52 -12.03 9.79 -197.14 -1.93 -13.96 16 11 C 0.33 8.50 5.38 133.50 0.72 9.22 16 12 N -0.49 -14.01 4.51 -700.06 -3.16 -17.17 16 13 C 0.08 2.40 5.48 86.31 0.47 2.87 16 14 C 0.06 2.11 5.61 86.31 0.48 2.60 16 15 N -0.54 -23.11 4.70 -900.29 -4.23 -27.34 16 16 C 0.21 11.05 4.72 85.56 0.40 11.45 16 17 C -0.52 -28.95 8.47 25.60 0.22 -28.73 16 18 H 0.06 3.52 7.13 -2.91 -0.02 3.50 16 19 C 0.00 0.08 5.46 84.65 0.46 0.55 16 20 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16 21 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 22 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 C 0.07 2.72 5.43 86.31 0.47 3.19 16 26 C 0.08 2.30 5.41 86.31 0.47 2.76 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 0.95 8.00 -2.39 -0.02 0.93 16 29 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.44 1.23 9.11 -74.06 -0.67 0.56 16 31 H 0.25 2.21 8.06 -2.91 -0.02 2.19 16 32 H 0.06 1.73 8.05 -2.39 -0.02 1.71 16 33 H 0.09 2.36 8.13 -2.39 -0.02 2.34 16 34 H 0.08 2.82 8.07 -2.38 -0.02 2.80 16 35 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 36 H -0.04 -2.09 8.12 -2.39 -0.02 -2.11 16 37 H 0.01 0.33 8.03 -2.39 -0.02 0.31 16 38 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 39 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 3.15 6.79 -2.39 -0.02 3.13 16 41 H 0.06 1.78 7.93 -2.39 -0.02 1.77 16 42 H 0.09 2.29 8.13 -2.39 -0.02 2.27 16 Total: -1.00 -71.10 357.17 -1.36 -72.46 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 0.38 Total: 4.69 kcal Atomic # 6 Polarization: 22.25 SS G_CDS: 8.13 Total: 30.39 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -10.97 Total: -125.35 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.93 Total: -27.88 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -71.10 -1.36 -72.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599330808.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.595 kcal (2) G-P(sol) polarization free energy of solvation -71.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds