Wall clock time and date at job start Tue Mar 31 2020 13:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35699 * 117.00263 * 2 1 4 4 C 1.40653 * 120.97537 * 269.97487 * 3 2 1 5 5 N 1.38627 * 120.54641 * 0.04527 * 4 3 2 6 6 C 1.46503 * 119.99787 * 179.97438 * 5 4 3 7 7 C 1.53037 * 109.46277 * 275.02571 * 6 5 4 8 8 C 1.53190 * 109.31238 * 178.60184 * 7 6 5 9 9 N 1.46920 * 108.76637 * 54.65459 * 8 7 6 10 10 C 1.36938 * 120.62949 * 126.36150 * 9 8 7 11 11 H 1.08004 * 119.99859 * 208.02120 * 10 9 8 12 12 C 1.38812 * 120.00043 * 28.02065 * 10 9 8 13 13 N 1.31615 * 119.99823 * 17.52616 * 12 10 9 14 14 Si 1.86800 * 119.99920 * 197.52469 * 12 10 9 15 15 H 1.48496 * 109.47185 * 94.06745 * 14 12 10 16 16 H 1.48501 * 109.47193 * 214.06868 * 14 12 10 17 17 H 1.48504 * 109.47276 * 334.06620 * 14 12 10 18 18 C 1.46924 * 118.74074 * 306.38535 * 9 8 7 19 19 C 1.53045 * 109.45688 * 154.97005 * 6 5 4 20 20 N 1.32565 * 118.90429 * 180.02562 * 4 3 2 21 21 C 1.32036 * 121.01421 * 0.02562 * 20 4 3 22 22 N 1.31328 * 122.19039 * 359.71154 * 21 20 4 23 23 C 1.33594 * 120.98426 * 0.58001 * 22 21 20 24 24 C 1.47941 * 120.57187 * 179.71527 * 23 22 21 25 25 O 1.21440 * 119.99899 * 179.72848 * 24 23 22 26 26 O 1.34693 * 119.99985 * 359.71741 * 24 23 22 27 27 H 1.08995 * 109.47191 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47046 * 300.00607 * 1 2 3 29 29 H 1.08996 * 109.46646 * 60.00227 * 1 2 3 30 30 H 0.97001 * 120.00026 * 359.97438 * 5 4 3 31 31 H 1.08996 * 109.45665 * 35.00156 * 6 5 4 32 32 H 1.09003 * 109.49746 * 298.56665 * 7 6 5 33 33 H 1.09004 * 109.49614 * 58.66226 * 7 6 5 34 34 H 1.09004 * 109.59724 * 294.86370 * 8 7 6 35 35 H 1.09003 * 109.70278 * 174.50558 * 8 7 6 36 36 H 0.97005 * 119.99777 * 179.97438 * 13 12 10 37 37 H 1.08996 * 109.58350 * 293.81722 * 18 9 8 38 38 H 1.09001 * 109.70586 * 173.46578 * 18 9 8 39 39 H 1.08994 * 109.49664 * 301.33831 * 19 6 5 40 40 H 1.08997 * 109.49683 * 61.40180 * 19 6 5 41 41 H 1.07998 * 118.90549 * 179.97438 * 21 20 4 42 42 H 0.96696 * 117.00351 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 2.3742 1.8538 -1.2059 5 7 2.0738 1.2650 -2.4245 6 6 2.4215 1.9475 -3.6733 7 6 1.3111 2.9340 -4.0416 8 6 1.6943 3.6708 -5.3289 9 7 1.9897 2.6785 -6.3713 10 6 1.3561 2.7310 -7.5841 11 1 1.2061 1.8262 -8.1546 12 6 0.9067 3.9470 -8.0804 13 7 1.3733 5.0731 -7.5841 14 14 -0.3602 3.9849 -9.4526 15 1 -1.7201 4.1017 -8.8676 16 1 -0.0992 5.1503 -10.3352 17 1 -0.2685 2.7329 -10.2459 18 6 2.9775 1.6285 -6.0876 19 6 2.5800 0.9148 -4.7916 20 7 2.9762 3.0339 -1.1580 21 6 3.2668 3.6030 -0.0026 22 7 2.9740 3.0407 1.1475 23 6 2.3724 1.8489 1.1969 24 6 2.0524 1.2209 2.4976 25 8 1.5009 0.1394 2.5304 26 8 2.3728 1.8485 3.6455 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.6333 0.4012 -2.4502 31 1 3.3590 2.4881 -3.5427 32 1 0.3787 2.3910 -4.1967 33 1 1.1826 3.6552 -3.2343 34 1 2.5761 4.2859 -5.1494 35 1 0.8669 4.3033 -5.6505 36 1 1.0595 5.9229 -7.9312 37 1 3.9639 2.0770 -5.9700 38 1 2.9976 0.9114 -6.9082 39 1 3.3549 0.1987 -4.5183 40 1 1.6359 0.3906 -4.9392 41 1 3.7578 4.5649 -0.0033 42 1 2.1441 1.3989 4.4704 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599343162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:19 Heat of formation + Delta-G solvation = -42.496899 kcal Electronic energy + Delta-G solvation = -27582.713616 eV Core-core repulsion = 23564.528786 eV Total energy + Delta-G solvation = -4018.184830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.57938 -40.03008 -38.41396 -38.16804 -36.29843 -35.65993 -33.35476 -32.28820 -30.89705 -30.04835 -29.18415 -27.44928 -26.03100 -24.72168 -23.81115 -22.45965 -22.26119 -21.30304 -19.70595 -18.92544 -18.13014 -17.84327 -17.61152 -16.90397 -16.46414 -16.31953 -15.57939 -15.18044 -14.81005 -14.62684 -14.47190 -14.23977 -13.92644 -13.60439 -13.53453 -13.12592 -13.04215 -12.46420 -12.40729 -11.91866 -11.69366 -11.54414 -11.36631 -11.16146 -11.10231 -10.88750 -10.79063 -10.78920 -10.44619 -10.27101 -10.18516 -9.94390 -9.69726 -9.61720 -9.14174 -8.53512 -8.07784 -6.74987 -5.84074 -3.26831 0.12161 0.95002 2.25105 2.39554 3.01643 3.21673 3.34484 3.41854 3.42986 3.71907 3.90936 4.17431 4.45076 4.54918 4.79531 5.05064 5.11102 5.18327 5.25795 5.33205 5.39167 5.43758 5.53517 5.73723 5.87410 5.99701 6.07036 6.15798 6.27686 6.38249 6.44436 6.52775 6.57271 6.67893 6.85600 6.93604 7.18289 7.26507 7.38676 7.60207 7.61006 7.75234 8.06129 8.39538 9.15640 9.78634 10.34862 11.24535 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025215 B = 0.002858 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.184763 B = 9795.930851 C =10115.535450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.307 6.307 3 C -0.010 4.010 4 C 0.436 3.564 5 N -0.686 5.686 6 C 0.155 3.845 7 C -0.145 4.145 8 C 0.175 3.825 9 N -0.592 5.592 10 C -0.256 4.256 11 H 0.066 0.934 12 C 0.004 3.996 13 N -0.900 5.900 14 Si 0.902 3.098 15 H -0.288 1.288 16 H -0.291 1.291 17 H -0.279 1.279 18 C 0.150 3.850 19 C -0.141 4.141 20 N -0.543 5.543 21 C 0.337 3.663 22 N -0.517 5.517 23 C 0.143 3.857 24 C 0.541 3.459 25 O -0.485 6.485 26 O -0.491 6.491 27 H 0.100 0.900 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.411 0.589 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.022 0.978 35 H 0.089 0.911 36 H 0.254 0.746 37 H 0.021 0.979 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.207 0.793 42 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.880 -7.133 18.657 19.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.220 6.220 3 C -0.067 4.067 4 C 0.186 3.814 5 N -0.315 5.315 6 C 0.052 3.948 7 C -0.185 4.185 8 C 0.049 3.951 9 N -0.315 5.315 10 C -0.385 4.385 11 H 0.084 0.916 12 C -0.195 4.195 13 N -0.544 5.544 14 Si 0.732 3.268 15 H -0.215 1.215 16 H -0.217 1.217 17 H -0.204 1.204 18 C 0.023 3.977 19 C -0.181 4.181 20 N -0.269 5.269 21 C 0.048 3.952 22 N -0.240 5.240 23 C 0.001 3.999 24 C 0.382 3.618 25 O -0.370 6.370 26 O -0.301 6.301 27 H 0.118 0.882 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.248 0.752 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.039 0.961 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.223 0.777 42 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 1.318 -6.363 18.067 19.200 hybrid contribution -1.547 -1.078 -0.109 1.889 sum -0.229 -7.441 17.958 19.440 Atomic orbital electron populations 1.23044 0.78483 1.03760 1.00476 1.86077 1.20158 1.22086 1.93664 1.19675 1.05225 0.90509 0.91251 1.19075 0.88154 0.88007 0.86190 1.45227 1.61285 1.22567 1.02433 1.21227 0.99604 0.93640 0.80304 1.22584 0.97404 0.98159 1.00389 1.20746 1.00171 0.90278 0.83948 1.44107 1.44244 1.30788 1.12362 1.19188 1.30929 0.92385 0.96027 0.91610 1.25051 1.00566 0.95598 0.98308 1.70035 1.43035 0.96771 1.44570 0.86282 0.81699 0.77220 0.81599 1.21494 1.21730 1.20380 1.20820 0.92110 0.91597 0.93194 1.22376 1.01409 0.97513 0.96808 1.68044 1.17767 1.09761 1.31356 1.24767 0.91103 0.98467 0.80897 1.68470 1.15919 1.08712 1.30906 1.20436 0.97788 0.91519 0.90144 1.20251 0.75376 0.82242 0.83962 1.90944 1.38255 1.20229 1.87607 1.84690 1.76586 1.52423 1.16415 0.88200 0.93455 0.93593 0.75213 0.89239 0.92859 0.92810 0.95939 0.89293 0.93558 0.96064 0.92245 0.92474 0.91838 0.77654 0.72920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.55 101.05 1.07 1.44 16 2 O -0.31 -3.95 8.30 -40.17 -0.33 -4.29 16 3 C -0.01 -0.13 5.82 -38.16 -0.22 -0.35 16 4 C 0.44 6.13 7.52 -154.67 -1.16 4.97 16 5 N -0.69 -9.36 5.21 -53.53 -0.28 -9.64 16 6 C 0.16 2.47 2.45 -67.89 -0.17 2.30 16 7 C -0.14 -2.66 5.66 -26.61 -0.15 -2.81 16 8 C 0.17 4.01 5.31 -3.72 -0.02 3.99 16 9 N -0.59 -14.17 2.99 -172.32 -0.52 -14.69 16 10 C -0.26 -6.79 9.58 -15.06 -0.14 -6.93 16 11 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 12 C 0.00 0.10 4.90 -17.43 -0.09 0.02 16 13 N -0.90 -25.53 11.22 55.49 0.62 -24.91 16 14 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 C 0.15 2.95 6.51 -3.71 -0.02 2.92 16 19 C -0.14 -2.23 5.55 -26.61 -0.15 -2.38 16 20 N -0.54 -7.69 9.33 -13.66 -0.13 -7.81 16 21 C 0.34 4.07 12.26 -92.34 -1.13 2.93 16 22 N -0.52 -6.68 10.24 -11.19 -0.11 -6.79 16 23 C 0.14 1.89 6.79 -82.61 -0.56 1.33 16 24 C 0.54 6.50 8.33 34.71 0.29 6.79 16 25 O -0.48 -6.47 15.01 -26.38 -0.40 -6.86 16 26 O -0.49 -4.47 13.28 -40.47 -0.54 -5.01 16 27 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.50 7.56 -51.93 -0.39 0.10 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.41 5.00 8.06 -40.82 -0.33 4.67 16 31 H 0.09 1.54 7.57 -51.93 -0.39 1.15 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 36 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.21 1.74 8.06 -52.49 -0.42 1.31 16 42 H 0.41 1.53 9.11 45.56 0.42 1.95 16 LS Contribution 353.43 15.07 5.33 5.33 Total: -1.00 -32.07 353.43 -8.63 -40.70 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -4.78 Total: 3.57 kcal Atomic # 6 Polarization: 16.69 SS G_CDS: -2.46 Total: 14.22 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: -0.41 Total: -63.85 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -1.27 Total: -16.16 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.07 -8.63 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599343162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.801 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds