Wall clock time and date at job start Tue Mar 31 2020 13:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35699 * 117.00263 * 2 1 4 4 C 1.40653 * 120.97537 * 269.97487 * 3 2 1 5 5 N 1.38627 * 120.54641 * 0.04527 * 4 3 2 6 6 C 1.46503 * 119.99787 * 179.97438 * 5 4 3 7 7 C 1.53037 * 109.46277 * 275.02571 * 6 5 4 8 8 C 1.53190 * 109.31238 * 178.60184 * 7 6 5 9 9 N 1.46920 * 108.76637 * 54.65459 * 8 7 6 10 10 C 1.36938 * 120.62949 * 126.36150 * 9 8 7 11 11 H 1.08004 * 119.99859 * 208.02120 * 10 9 8 12 12 C 1.38812 * 120.00043 * 28.02065 * 10 9 8 13 13 N 1.31615 * 119.99823 * 17.52616 * 12 10 9 14 14 Si 1.86800 * 119.99920 * 197.52469 * 12 10 9 15 15 H 1.48496 * 109.47185 * 94.06745 * 14 12 10 16 16 H 1.48501 * 109.47193 * 214.06868 * 14 12 10 17 17 H 1.48504 * 109.47276 * 334.06620 * 14 12 10 18 18 C 1.46924 * 118.74074 * 306.38535 * 9 8 7 19 19 C 1.53045 * 109.45688 * 154.97005 * 6 5 4 20 20 N 1.32565 * 118.90429 * 180.02562 * 4 3 2 21 21 C 1.32036 * 121.01421 * 0.02562 * 20 4 3 22 22 N 1.31328 * 122.19039 * 359.71154 * 21 20 4 23 23 C 1.33594 * 120.98426 * 0.58001 * 22 21 20 24 24 C 1.47941 * 120.57187 * 179.71527 * 23 22 21 25 25 O 1.21440 * 119.99899 * 179.72848 * 24 23 22 26 26 O 1.34693 * 119.99985 * 359.71741 * 24 23 22 27 27 H 1.08995 * 109.47191 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47046 * 300.00607 * 1 2 3 29 29 H 1.08996 * 109.46646 * 60.00227 * 1 2 3 30 30 H 0.97001 * 120.00026 * 359.97438 * 5 4 3 31 31 H 1.08996 * 109.45665 * 35.00156 * 6 5 4 32 32 H 1.09003 * 109.49746 * 298.56665 * 7 6 5 33 33 H 1.09004 * 109.49614 * 58.66226 * 7 6 5 34 34 H 1.09004 * 109.59724 * 294.86370 * 8 7 6 35 35 H 1.09003 * 109.70278 * 174.50558 * 8 7 6 36 36 H 0.97005 * 119.99777 * 179.97438 * 13 12 10 37 37 H 1.08996 * 109.58350 * 293.81722 * 18 9 8 38 38 H 1.09001 * 109.70586 * 173.46578 * 18 9 8 39 39 H 1.08994 * 109.49664 * 301.33831 * 19 6 5 40 40 H 1.08997 * 109.49683 * 61.40180 * 19 6 5 41 41 H 1.07998 * 118.90549 * 179.97438 * 21 20 4 42 42 H 0.96696 * 117.00351 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 2.3742 1.8538 -1.2059 5 7 2.0738 1.2650 -2.4245 6 6 2.4215 1.9475 -3.6733 7 6 1.3111 2.9340 -4.0416 8 6 1.6943 3.6708 -5.3289 9 7 1.9897 2.6785 -6.3713 10 6 1.3561 2.7310 -7.5841 11 1 1.2061 1.8262 -8.1546 12 6 0.9067 3.9470 -8.0804 13 7 1.3733 5.0731 -7.5841 14 14 -0.3602 3.9849 -9.4526 15 1 -1.7201 4.1017 -8.8676 16 1 -0.0992 5.1503 -10.3352 17 1 -0.2685 2.7329 -10.2459 18 6 2.9775 1.6285 -6.0876 19 6 2.5800 0.9148 -4.7916 20 7 2.9762 3.0339 -1.1580 21 6 3.2668 3.6030 -0.0026 22 7 2.9740 3.0407 1.1475 23 6 2.3724 1.8489 1.1969 24 6 2.0524 1.2209 2.4976 25 8 1.5009 0.1394 2.5304 26 8 2.3728 1.8485 3.6455 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.6333 0.4012 -2.4502 31 1 3.3590 2.4881 -3.5427 32 1 0.3787 2.3910 -4.1967 33 1 1.1826 3.6552 -3.2343 34 1 2.5761 4.2859 -5.1494 35 1 0.8669 4.3033 -5.6505 36 1 1.0595 5.9229 -7.9312 37 1 3.9639 2.0770 -5.9700 38 1 2.9976 0.9114 -6.9082 39 1 3.3549 0.1987 -4.5183 40 1 1.6359 0.3906 -4.9392 41 1 3.7578 4.5649 -0.0033 42 1 2.1441 1.3989 4.4704 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599343162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:18 Heat of formation + Delta-G solvation = -63.497442 kcal Electronic energy + Delta-G solvation = -27583.624268 eV Core-core repulsion = 23564.528786 eV Total energy + Delta-G solvation = -4019.095482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.55830 -40.93823 -39.61699 -39.32587 -37.14925 -37.03360 -34.76281 -33.66094 -32.27274 -31.61923 -30.60339 -28.30304 -27.33833 -26.22557 -24.82391 -23.83577 -23.80685 -22.49474 -21.11960 -20.04703 -19.10250 -18.87053 -18.72515 -18.45447 -17.45480 -17.35065 -16.87946 -16.45650 -16.16873 -15.69253 -15.60557 -15.36443 -15.33279 -15.15622 -14.76208 -14.56181 -14.38674 -14.01276 -13.27866 -13.17783 -13.10215 -12.97249 -12.64795 -12.62040 -12.46870 -12.27124 -12.07102 -12.02555 -11.96789 -11.82255 -11.70107 -11.45612 -11.31292 -10.92300 -10.53898 -10.15856 -9.19284 -8.69627 -7.87050 -5.32076 -0.85037 -0.05609 1.32081 1.47233 1.49244 1.51077 1.57997 1.98767 2.29187 2.51888 2.73250 3.01894 3.17132 3.29288 3.60154 3.68468 3.85172 3.88139 4.07682 4.26477 4.33195 4.35186 4.41593 4.48130 4.67773 4.70040 4.82097 4.83609 5.00122 5.06961 5.11693 5.16787 5.31143 5.32793 5.44479 5.52632 5.65822 5.72710 5.78928 6.19300 6.37345 6.40574 6.84955 7.07687 7.15407 7.86242 8.37621 9.19613 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025215 B = 0.002858 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.184763 B = 9795.930851 C =10115.535450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.316 6.316 3 C -0.011 4.011 4 C 0.428 3.572 5 N -0.680 5.680 6 C 0.172 3.828 7 C -0.127 4.127 8 C 0.184 3.816 9 N -0.610 5.610 10 C -0.262 4.262 11 H 0.069 0.931 12 C -0.050 4.050 13 N -0.933 5.933 14 Si 0.964 3.036 15 H -0.288 1.288 16 H -0.297 1.297 17 H -0.267 1.267 18 C 0.145 3.855 19 C -0.126 4.126 20 N -0.562 5.562 21 C 0.336 3.664 22 N -0.519 5.519 23 C 0.131 3.869 24 C 0.546 3.454 25 O -0.502 6.502 26 O -0.486 6.486 27 H 0.120 0.880 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.420 0.580 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.055 0.945 34 H -0.001 1.001 35 H 0.053 0.947 36 H 0.249 0.751 37 H 0.017 0.983 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.238 0.762 42 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 -8.613 19.867 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.229 6.229 3 C -0.067 4.067 4 C 0.178 3.822 5 N -0.311 5.311 6 C 0.067 3.933 7 C -0.167 4.167 8 C 0.058 3.942 9 N -0.334 5.334 10 C -0.392 4.392 11 H 0.087 0.913 12 C -0.246 4.246 13 N -0.579 5.579 14 Si 0.793 3.207 15 H -0.215 1.215 16 H -0.224 1.224 17 H -0.191 1.191 18 C 0.019 3.981 19 C -0.166 4.166 20 N -0.289 5.289 21 C 0.048 3.952 22 N -0.242 5.242 23 C -0.011 4.011 24 C 0.387 3.613 25 O -0.389 6.389 26 O -0.299 6.299 27 H 0.138 0.862 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.259 0.741 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.017 0.983 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.035 0.965 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.254 0.746 42 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 1.156 -7.881 19.340 20.916 hybrid contribution -1.438 -0.609 -0.371 1.605 sum -0.282 -8.490 18.969 20.784 Atomic orbital electron populations 1.23201 0.77146 1.05152 1.00458 1.86055 1.21421 1.21789 1.93663 1.19676 1.05269 0.90662 0.91110 1.19178 0.88456 0.88233 0.86348 1.44873 1.61921 1.22796 1.01526 1.20814 0.97838 0.93165 0.81450 1.22302 0.98189 0.98389 0.97850 1.20472 0.97721 0.90219 0.85816 1.44356 1.45384 1.31685 1.11938 1.19528 1.30487 0.92414 0.96744 0.91287 1.25783 1.02535 0.95395 1.00865 1.70186 1.44507 0.97040 1.46213 0.85296 0.79206 0.77185 0.79020 1.21465 1.22365 1.19140 1.20985 0.90991 0.90720 0.95436 1.22174 1.02638 0.97337 0.94436 1.68084 1.18318 1.10076 1.32462 1.25405 0.90440 0.99208 0.80155 1.68542 1.15831 1.08658 1.31177 1.20731 0.97718 0.91730 0.90908 1.20053 0.75066 0.81889 0.84307 1.90936 1.39153 1.20908 1.87918 1.84636 1.76002 1.52390 1.16879 0.86163 0.93927 0.93116 0.74137 0.90362 0.93023 0.92641 0.98316 0.92907 0.94149 0.96458 0.91830 0.89449 0.91273 0.74602 0.70169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.55 113.37 1.20 1.84 16 2 O -0.32 -7.60 8.30 -69.76 -0.58 -8.18 16 3 C -0.01 -0.27 5.82 23.19 0.14 -0.14 16 4 C 0.43 11.40 7.52 133.52 1.00 12.40 16 5 N -0.68 -17.32 5.21 -323.28 -1.68 -19.01 16 6 C 0.17 5.23 2.45 45.02 0.11 5.34 16 7 C -0.13 -4.62 5.66 30.67 0.17 -4.45 16 8 C 0.18 8.67 5.31 86.36 0.46 9.13 16 9 N -0.61 -29.40 2.99 -699.11 -2.09 -31.49 16 10 C -0.26 -13.95 9.58 84.03 0.81 -13.14 16 11 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 12 C -0.05 -2.75 4.90 84.86 0.42 -2.34 16 13 N -0.93 -54.56 11.22 21.65 0.24 -54.32 16 14 Si 0.96 44.10 29.59 68.60 2.03 46.13 16 15 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 16 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 18 C 0.14 5.55 6.51 86.36 0.56 6.11 16 19 C -0.13 -3.72 5.55 30.67 0.17 -3.55 16 20 N -0.56 -15.23 9.33 -197.13 -1.84 -17.07 16 21 C 0.34 7.58 12.26 180.95 2.22 9.80 16 22 N -0.52 -12.56 10.24 -189.31 -1.94 -14.50 16 23 C 0.13 3.28 6.79 41.78 0.28 3.56 16 24 C 0.55 12.21 8.33 70.39 0.59 12.79 16 25 O -0.50 -12.61 15.01 26.88 0.40 -12.21 16 26 O -0.49 -7.79 13.28 -56.03 -0.74 -8.53 16 27 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.04 0.83 7.56 -2.39 -0.02 0.81 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.42 9.22 8.06 -92.71 -0.75 8.47 16 31 H 0.08 2.62 7.57 -2.39 -0.02 2.60 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 35 H 0.05 2.86 6.06 -2.39 -0.01 2.84 16 36 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 37 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.06 2.36 7.94 -2.39 -0.02 2.34 16 39 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.24 3.50 8.06 -2.91 -0.02 3.47 16 42 H 0.44 2.16 9.11 -74.06 -0.67 1.49 16 Total: -1.00 -69.58 353.43 1.58 -68.00 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -0.34 Total: 13.81 kcal Atomic # 6 Polarization: 29.23 SS G_CDS: 8.12 Total: 37.36 kcal Atomic # 7 Polarization: -129.07 SS G_CDS: -7.31 Total: -136.38 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.92 Total: -28.92 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -69.58 1.58 -68.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599343162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.506 kcal (2) G-P(sol) polarization free energy of solvation -69.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds