Wall clock time and date at job start Tue Mar 31 2020 12:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34125 * 125.66671 * 2 1 4 4 C 1.38198 * 107.53013 * 180.02562 * 3 2 1 5 5 C 1.47076 * 126.46447 * 179.97438 * 4 3 2 6 6 O 1.21548 * 120.00103 * 180.02562 * 5 4 3 7 7 O 1.34778 * 120.00010 * 0.02562 * 5 4 3 8 8 C 1.41877 * 107.07220 * 0.02562 * 4 3 2 9 9 N 1.39778 * 126.07852 * 180.02562 * 8 4 3 10 10 C 1.34772 * 119.99572 * 179.97438 * 9 8 4 11 11 O 1.21583 * 120.00348 * 5.30745 * 10 9 8 12 12 N 1.34780 * 119.99711 * 185.03649 * 10 9 8 13 13 C 1.46927 * 120.62927 * 354.96473 * 12 10 9 14 14 C 1.53630 * 108.54366 * 126.37178 * 13 12 10 15 15 C 1.53042 * 109.24079 * 54.85213 * 14 13 12 16 16 C 1.53042 * 109.53952 * 298.51353 * 15 14 13 17 17 H 1.08991 * 109.49760 * 301.41229 * 16 15 14 18 18 C 1.50702 * 109.49470 * 181.31709 * 16 15 14 19 19 H 1.07995 * 119.99980 * 0.15756 * 18 16 15 20 20 C 1.37880 * 119.99637 * 180.16187 * 18 16 15 21 21 N 1.31514 * 119.99858 * 179.97438 * 20 18 16 22 22 Si 1.86793 * 120.00240 * 0.02562 * 20 18 16 23 23 H 1.48496 * 109.47588 * 89.99703 * 22 20 18 24 24 H 1.48504 * 109.47361 * 210.00132 * 22 20 18 25 25 H 1.48509 * 109.47038 * 329.99731 * 22 20 18 26 26 C 1.46924 * 120.63047 * 175.24496 * 12 10 9 27 27 N 1.30901 * 107.83708 * 0.25864 * 8 4 3 28 28 H 1.08998 * 109.46800 * 89.99652 * 1 2 3 29 29 H 1.09001 * 109.47309 * 210.00244 * 1 2 3 30 30 H 1.09004 * 109.46555 * 329.99861 * 1 2 3 31 31 H 1.08004 * 126.23707 * 0.07283 * 3 2 1 32 32 H 0.96698 * 116.99945 * 180.02562 * 7 5 4 33 33 H 0.96998 * 119.99896 * 0.02562 * 9 8 4 34 34 H 1.09002 * 109.58719 * 246.19871 * 13 12 10 35 35 H 1.08996 * 109.58956 * 6.62662 * 13 12 10 36 36 H 1.08998 * 109.62806 * 294.86809 * 14 13 12 37 37 H 1.08992 * 109.45891 * 174.73752 * 14 13 12 38 38 H 1.09002 * 109.45971 * 178.48878 * 15 14 13 39 39 H 1.09006 * 109.45626 * 58.53422 * 15 14 13 40 40 H 0.96997 * 120.00109 * 180.02562 * 21 20 18 41 41 H 1.09001 * 109.59194 * 353.37393 * 26 12 10 42 42 H 1.09004 * 109.58996 * 113.65549 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2471 1.0897 0.0000 4 6 3.5604 0.6595 -0.0006 5 6 4.7593 1.5114 -0.0013 6 8 5.8644 1.0055 -0.0023 7 8 4.6325 2.8532 -0.0010 8 6 3.5340 -0.7591 -0.0016 9 7 4.6483 -1.6030 -0.0019 10 6 4.4806 -2.9403 -0.0023 11 8 3.3647 -3.4131 -0.0998 12 7 5.5505 -3.7536 0.0999 13 6 6.9124 -3.2023 0.1016 14 6 7.6483 -3.7221 1.3460 15 6 7.5895 -5.2513 1.3646 16 6 6.1304 -5.7065 1.4430 17 1 5.6685 -5.2946 2.3401 18 6 6.0752 -7.2117 1.4939 19 1 6.9893 -7.7865 1.4750 20 6 4.8577 -7.8548 1.5644 21 7 4.8094 -9.1683 1.6083 22 14 3.2766 -6.8606 1.5962 23 1 2.8008 -6.6428 0.2065 24 1 2.2422 -7.6000 2.3634 25 1 3.5299 -5.5485 2.2441 26 6 5.3772 -5.2088 0.2054 27 7 2.2807 -1.1368 -0.0072 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3632 0.8900 0.5139 31 1 1.9116 2.1163 0.0011 32 1 5.4489 3.3713 -0.0019 33 1 5.5421 -1.2262 -0.0010 34 1 7.4378 -3.5236 -0.7977 35 1 6.8660 -2.1137 0.1310 36 1 7.1720 -3.3288 2.2440 37 1 8.6886 -3.3984 1.3143 38 1 8.1337 -5.6251 2.2319 39 1 8.0438 -5.6432 0.4545 40 1 3.9529 -9.6208 1.6575 41 1 4.3175 -5.4445 0.3033 42 1 5.7777 -5.6902 -0.6868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600932371.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:31 Heat of formation + Delta-G solvation = -19.594599 kcal Electronic energy + Delta-G solvation = -27918.079128 eV Core-core repulsion = 23900.887416 eV Total energy + Delta-G solvation = -4017.191712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.77584 -40.00117 -39.80848 -37.23592 -36.24871 -34.97757 -33.50345 -32.43465 -31.77556 -30.70768 -30.38223 -27.25915 -25.19346 -24.99739 -23.64361 -22.13949 -21.91198 -20.95992 -19.65682 -18.89091 -18.16896 -17.95960 -17.49708 -16.75245 -16.47481 -16.25039 -15.69295 -15.41241 -15.04339 -14.93771 -14.20789 -13.97562 -13.86913 -13.73370 -13.34617 -13.23584 -12.96336 -12.91070 -12.78238 -12.47087 -12.16145 -11.77276 -11.30493 -11.09520 -11.04024 -10.90543 -10.72923 -10.56814 -10.36026 -10.06460 -9.75614 -9.66208 -9.20602 -9.19054 -9.06735 -8.59929 -8.51878 -7.96737 -6.06723 -4.08157 1.06182 1.92973 1.97301 2.67826 2.91512 3.08262 3.43588 3.51452 3.63282 3.66534 3.95134 4.15148 4.41546 4.47313 4.81326 4.87689 5.04419 5.14448 5.18670 5.25929 5.34826 5.36568 5.46311 5.55807 5.85539 6.03645 6.13634 6.16643 6.26488 6.44594 6.49296 6.54046 6.60232 6.70527 6.75516 6.87526 7.00730 7.19816 7.48329 7.54267 7.74309 7.76376 8.17139 8.51629 8.83456 8.96527 9.55162 11.05131 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015741 B = 0.004181 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.327568 B = 6695.384911 C = 8265.875532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.353 5.353 3 C 0.145 3.855 4 C -0.313 4.313 5 C 0.567 3.433 6 O -0.531 6.531 7 O -0.517 6.517 8 C 0.382 3.618 9 N -0.648 5.648 10 C 0.693 3.307 11 O -0.547 6.547 12 N -0.617 5.617 13 C 0.110 3.890 14 C -0.136 4.136 15 C -0.100 4.100 16 C 0.003 3.997 17 H 0.031 0.969 18 C -0.515 4.515 19 H 0.078 0.922 20 C 0.074 3.926 21 N -0.896 5.896 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.296 1.296 25 H -0.264 1.264 26 C 0.120 3.880 27 N -0.277 5.277 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.194 0.806 32 H 0.413 0.587 33 H 0.424 0.576 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.265 0.735 41 H 0.079 0.921 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.459 26.981 -4.010 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.129 5.129 3 C -0.010 4.010 4 C -0.329 4.329 5 C 0.413 3.587 6 O -0.422 6.422 7 O -0.328 6.328 8 C 0.121 3.879 9 N -0.306 5.306 10 C 0.394 3.606 11 O -0.420 6.420 12 N -0.354 5.354 13 C -0.013 4.013 14 C -0.174 4.174 15 C -0.137 4.137 16 C -0.016 4.016 17 H 0.049 0.951 18 C -0.553 4.553 19 H 0.096 0.904 20 C -0.129 4.129 21 N -0.534 5.534 22 Si 0.709 3.291 23 H -0.198 1.198 24 H -0.224 1.224 25 H -0.189 1.189 26 C -0.001 4.001 27 N -0.106 5.106 28 H 0.101 0.899 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.211 0.789 32 H 0.272 0.728 33 H 0.267 0.733 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.353 24.961 -4.068 25.851 hybrid contribution 0.567 1.716 -0.022 1.808 sum -4.786 26.678 -4.090 27.411 Atomic orbital electron populations 1.22058 0.72806 1.05286 1.04207 1.48416 1.07567 1.03785 1.53142 1.23151 0.89370 0.94260 0.94239 1.18851 0.91676 0.90576 1.31768 1.19532 0.87616 0.80163 0.71432 1.90831 1.27773 1.74929 1.48658 1.84531 1.42619 1.19273 1.86397 1.18806 0.87704 0.86698 0.94658 1.42559 1.07303 1.04528 1.76226 1.15997 0.85506 0.80254 0.78797 1.91006 1.22556 1.73641 1.54786 1.47711 1.04009 1.08155 1.75491 1.21770 0.83041 0.97004 0.99505 1.22063 0.99349 0.98716 0.97264 1.21434 0.98704 0.91982 1.01603 1.19522 0.92066 0.97003 0.93051 0.95113 1.20951 0.94568 0.88418 1.51385 0.90382 1.25037 0.99066 0.94775 0.94035 1.69891 1.25957 1.07560 1.49971 0.86989 0.83148 0.79980 0.78945 1.19766 1.22393 1.18923 1.22586 1.02443 0.74151 1.00909 1.78263 0.99040 1.03214 1.30079 0.89880 0.88367 0.88814 0.78894 0.72840 0.73324 0.90997 0.91416 0.91943 0.91474 0.92136 0.92389 0.92534 0.90274 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.61 11.43 59.85 0.68 1.29 16 2 N -0.35 -3.98 3.97 -67.58 -0.27 -4.25 16 3 C 0.15 1.32 11.32 -16.56 -0.19 1.13 16 4 C -0.31 -3.92 6.14 -104.94 -0.64 -4.57 16 5 C 0.57 6.36 8.32 34.31 0.29 6.64 16 6 O -0.53 -7.22 15.99 -19.30 -0.31 -7.53 16 7 O -0.52 -3.62 13.26 -40.70 -0.54 -4.16 16 8 C 0.38 6.38 7.78 -154.46 -1.20 5.17 16 9 N -0.65 -11.43 5.33 -15.30 -0.08 -11.51 16 10 C 0.69 14.75 8.26 -86.92 -0.72 14.03 16 11 O -0.55 -13.78 14.51 5.29 0.08 -13.70 16 12 N -0.62 -12.47 2.97 -178.23 -0.53 -13.00 16 13 C 0.11 1.71 6.46 -3.48 -0.02 1.69 16 14 C -0.14 -2.12 6.10 -26.38 -0.16 -2.28 16 15 C -0.10 -1.92 5.10 -26.69 -0.14 -2.06 16 16 C 0.00 0.08 1.84 -91.65 -0.17 -0.09 16 17 H 0.03 0.79 7.21 -51.93 -0.37 0.41 16 18 C -0.52 -14.54 9.15 -34.44 -0.31 -14.86 16 19 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 20 C 0.07 2.18 5.45 -17.82 -0.10 2.08 16 21 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 22 Si 0.88 24.03 24.31 -169.99 -4.13 19.90 16 23 H -0.27 -7.53 6.92 56.52 0.39 -7.14 16 24 H -0.30 -8.01 7.11 56.52 0.40 -7.60 16 25 H -0.26 -7.31 6.53 56.52 0.37 -6.94 16 26 C 0.12 2.81 5.09 -3.71 -0.02 2.79 16 27 N -0.28 -4.82 10.73 31.62 0.34 -4.48 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.19 0.79 8.06 -52.48 -0.42 0.37 16 32 H 0.41 1.12 9.11 45.56 0.42 1.53 16 33 H 0.42 6.59 4.41 -40.82 -0.18 6.41 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.91 5.57 -51.93 -0.29 0.62 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 41 H 0.08 2.10 2.35 -51.93 -0.12 1.97 16 42 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 344.30 15.07 5.19 5.19 Total: -1.00 -39.91 344.30 -6.56 -46.46 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -4.37 Total: 3.19 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: -2.70 Total: 11.00 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: 0.23 Total: -60.33 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.77 Total: -25.40 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -4.13 Total: 19.90 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -39.91 -6.56 -46.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600932371.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.869 kcal (2) G-P(sol) polarization free energy of solvation -39.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds