Wall clock time and date at job start Tue Mar 31 2020 12:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34125 * 125.66671 * 2 1 4 4 C 1.38198 * 107.53013 * 180.02562 * 3 2 1 5 5 C 1.47076 * 126.46447 * 179.97438 * 4 3 2 6 6 O 1.21548 * 120.00103 * 180.02562 * 5 4 3 7 7 O 1.34778 * 120.00010 * 0.02562 * 5 4 3 8 8 C 1.41877 * 107.07220 * 0.02562 * 4 3 2 9 9 N 1.39778 * 126.07852 * 180.02562 * 8 4 3 10 10 C 1.34772 * 119.99572 * 179.97438 * 9 8 4 11 11 O 1.21583 * 120.00348 * 5.30745 * 10 9 8 12 12 N 1.34780 * 119.99711 * 185.03649 * 10 9 8 13 13 C 1.46927 * 120.62927 * 354.96473 * 12 10 9 14 14 C 1.53630 * 108.54366 * 126.37178 * 13 12 10 15 15 C 1.53042 * 109.24079 * 54.85213 * 14 13 12 16 16 C 1.53042 * 109.53952 * 298.51353 * 15 14 13 17 17 H 1.08991 * 109.49760 * 301.41229 * 16 15 14 18 18 C 1.50702 * 109.49470 * 181.31709 * 16 15 14 19 19 H 1.07995 * 119.99980 * 0.15756 * 18 16 15 20 20 C 1.37880 * 119.99637 * 180.16187 * 18 16 15 21 21 N 1.31514 * 119.99858 * 179.97438 * 20 18 16 22 22 Si 1.86793 * 120.00240 * 0.02562 * 20 18 16 23 23 H 1.48496 * 109.47588 * 89.99703 * 22 20 18 24 24 H 1.48504 * 109.47361 * 210.00132 * 22 20 18 25 25 H 1.48509 * 109.47038 * 329.99731 * 22 20 18 26 26 C 1.46924 * 120.63047 * 175.24496 * 12 10 9 27 27 N 1.30901 * 107.83708 * 0.25864 * 8 4 3 28 28 H 1.08998 * 109.46800 * 89.99652 * 1 2 3 29 29 H 1.09001 * 109.47309 * 210.00244 * 1 2 3 30 30 H 1.09004 * 109.46555 * 329.99861 * 1 2 3 31 31 H 1.08004 * 126.23707 * 0.07283 * 3 2 1 32 32 H 0.96698 * 116.99945 * 180.02562 * 7 5 4 33 33 H 0.96998 * 119.99896 * 0.02562 * 9 8 4 34 34 H 1.09002 * 109.58719 * 246.19871 * 13 12 10 35 35 H 1.08996 * 109.58956 * 6.62662 * 13 12 10 36 36 H 1.08998 * 109.62806 * 294.86809 * 14 13 12 37 37 H 1.08992 * 109.45891 * 174.73752 * 14 13 12 38 38 H 1.09002 * 109.45971 * 178.48878 * 15 14 13 39 39 H 1.09006 * 109.45626 * 58.53422 * 15 14 13 40 40 H 0.96997 * 120.00109 * 180.02562 * 21 20 18 41 41 H 1.09001 * 109.59194 * 353.37393 * 26 12 10 42 42 H 1.09004 * 109.58996 * 113.65549 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2471 1.0897 0.0000 4 6 3.5604 0.6595 -0.0006 5 6 4.7593 1.5114 -0.0013 6 8 5.8644 1.0055 -0.0023 7 8 4.6325 2.8532 -0.0010 8 6 3.5340 -0.7591 -0.0016 9 7 4.6483 -1.6030 -0.0019 10 6 4.4806 -2.9403 -0.0023 11 8 3.3647 -3.4131 -0.0998 12 7 5.5505 -3.7536 0.0999 13 6 6.9124 -3.2023 0.1016 14 6 7.6483 -3.7221 1.3460 15 6 7.5895 -5.2513 1.3646 16 6 6.1304 -5.7065 1.4430 17 1 5.6685 -5.2946 2.3401 18 6 6.0752 -7.2117 1.4939 19 1 6.9893 -7.7865 1.4750 20 6 4.8577 -7.8548 1.5644 21 7 4.8094 -9.1683 1.6083 22 14 3.2766 -6.8606 1.5962 23 1 2.8008 -6.6428 0.2065 24 1 2.2422 -7.6000 2.3634 25 1 3.5299 -5.5485 2.2441 26 6 5.3772 -5.2088 0.2054 27 7 2.2807 -1.1368 -0.0072 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3632 0.8900 0.5139 31 1 1.9116 2.1163 0.0011 32 1 5.4489 3.3713 -0.0019 33 1 5.5421 -1.2262 -0.0010 34 1 7.4378 -3.5236 -0.7977 35 1 6.8660 -2.1137 0.1310 36 1 7.1720 -3.3288 2.2440 37 1 8.6886 -3.3984 1.3143 38 1 8.1337 -5.6251 2.2319 39 1 8.0438 -5.6432 0.4545 40 1 3.9529 -9.6208 1.6575 41 1 4.3175 -5.4445 0.3033 42 1 5.7777 -5.6902 -0.6868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600932371.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:31 Heat of formation + Delta-G solvation = -50.786995 kcal Electronic energy + Delta-G solvation = -27919.431732 eV Core-core repulsion = 23900.887416 eV Total energy + Delta-G solvation = -4018.544315 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.76390 -41.47333 -40.58648 -38.81875 -37.02629 -36.27420 -35.34073 -33.92229 -33.10462 -32.18075 -31.64642 -28.09597 -27.06522 -26.49566 -24.57793 -23.65338 -23.13886 -22.02083 -21.14807 -20.31908 -19.40637 -18.94198 -18.75801 -18.48356 -17.64940 -17.21789 -16.93149 -16.53098 -16.42076 -16.06881 -15.80998 -15.59833 -15.40756 -14.95750 -14.72004 -14.61889 -14.28895 -13.97473 -13.83635 -13.68089 -13.49875 -13.21224 -12.97826 -12.47152 -12.36819 -12.20391 -12.08442 -12.02406 -11.90585 -11.69778 -11.61673 -11.32666 -11.08961 -11.02090 -10.82835 -10.21209 -9.81057 -9.41775 -8.41291 -6.42150 0.33222 0.86131 0.96533 1.19929 1.26745 1.40453 1.61046 1.87815 2.18272 2.24765 2.29096 2.70757 2.96366 3.30398 3.78523 3.90246 3.98050 4.07831 4.14999 4.37944 4.41248 4.41368 4.44713 4.50425 4.57784 4.64895 4.71501 4.73821 4.81158 4.94998 5.06119 5.16843 5.32419 5.41349 5.50091 5.56047 5.62263 5.66818 5.72955 5.86990 6.24862 6.34421 6.66386 6.81914 7.10265 7.23401 7.28816 8.74761 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015741 B = 0.004181 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.327568 B = 6695.384911 C = 8265.875532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.352 5.352 3 C 0.180 3.820 4 C -0.334 4.334 5 C 0.574 3.426 6 O -0.562 6.562 7 O -0.498 6.498 8 C 0.350 3.650 9 N -0.638 5.638 10 C 0.689 3.311 11 O -0.596 6.596 12 N -0.620 5.620 13 C 0.105 3.895 14 C -0.126 4.126 15 C -0.096 4.096 16 C 0.003 3.997 17 H 0.012 0.988 18 C -0.508 4.508 19 H 0.057 0.943 20 C 0.034 3.966 21 N -0.934 5.934 22 Si 0.935 3.065 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.275 1.275 26 C 0.127 3.873 27 N -0.341 5.341 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.143 0.857 31 H 0.253 0.747 32 H 0.434 0.566 33 H 0.432 0.568 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.111 0.889 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.268 0.732 41 H 0.047 0.953 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.176 31.449 -4.313 31.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.129 5.129 3 C 0.024 3.976 4 C -0.349 4.349 5 C 0.421 3.579 6 O -0.456 6.456 7 O -0.311 6.311 8 C 0.091 3.909 9 N -0.297 5.297 10 C 0.390 3.610 11 O -0.472 6.472 12 N -0.356 5.356 13 C -0.017 4.017 14 C -0.164 4.164 15 C -0.134 4.134 16 C -0.017 4.017 17 H 0.030 0.970 18 C -0.547 4.547 19 H 0.075 0.925 20 C -0.165 4.165 21 N -0.574 5.574 22 Si 0.766 3.234 23 H -0.211 1.211 24 H -0.219 1.219 25 H -0.201 1.201 26 C 0.005 3.995 27 N -0.170 5.170 28 H 0.116 0.884 29 H 0.098 0.902 30 H 0.161 0.839 31 H 0.269 0.731 32 H 0.297 0.703 33 H 0.277 0.723 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.130 0.870 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.048 29.513 -4.365 30.258 hybrid contribution 0.434 0.482 0.056 0.651 sum -4.614 29.995 -4.310 30.652 Atomic orbital electron populations 1.22500 0.70199 1.06806 1.05692 1.48728 1.08853 1.02915 1.52367 1.23984 0.87598 0.95706 0.90278 1.19067 0.93834 0.88929 1.33055 1.19322 0.86618 0.81224 0.70737 1.90809 1.28718 1.75798 1.50241 1.84461 1.44032 1.17163 1.85456 1.19169 0.87331 0.88352 0.96094 1.42266 1.08387 1.03190 1.75821 1.16178 0.84895 0.81447 0.78451 1.90959 1.24498 1.74845 1.56925 1.47628 1.05851 1.06769 1.75337 1.22128 0.80539 0.98432 1.00559 1.22014 1.01976 0.95447 0.96936 1.21370 0.94933 0.95008 1.02045 1.19459 0.95590 0.94124 0.92486 0.96984 1.21296 0.93331 0.90824 1.49206 0.92501 1.25539 1.01184 0.95208 0.94591 1.69966 1.26624 1.08621 1.52235 0.86116 0.81073 0.78268 0.77934 1.21106 1.21895 1.20112 1.22115 1.00178 0.76734 1.00486 1.78073 1.00313 1.07363 1.31275 0.88425 0.90189 0.83922 0.73073 0.70346 0.72333 0.88750 0.88911 0.92613 0.87028 0.92068 0.91650 0.92293 0.93501 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.86 11.43 127.77 1.46 2.33 16 2 N -0.35 -7.22 3.97 -367.73 -1.46 -8.68 16 3 C 0.18 2.59 11.32 84.33 0.95 3.54 16 4 C -0.33 -7.62 6.14 -20.07 -0.12 -7.75 16 5 C 0.57 11.28 8.32 70.14 0.58 11.87 16 6 O -0.56 -14.15 15.99 19.68 0.31 -13.84 16 7 O -0.50 -4.87 13.26 -56.89 -0.75 -5.62 16 8 C 0.35 11.60 7.78 133.92 1.04 12.64 16 9 N -0.64 -22.49 5.33 -320.58 -1.71 -24.20 16 10 C 0.69 29.89 8.26 179.05 1.48 31.37 16 11 O -0.60 -31.29 14.51 -3.98 -0.06 -31.34 16 12 N -0.62 -24.97 2.97 -836.06 -2.48 -27.45 16 13 C 0.10 3.01 6.46 86.51 0.56 3.57 16 14 C -0.13 -3.57 6.10 30.82 0.19 -3.38 16 15 C -0.10 -3.57 5.10 30.62 0.16 -3.41 16 16 C 0.00 0.15 1.84 -11.46 -0.02 0.13 16 17 H 0.01 0.63 7.21 -2.39 -0.02 0.61 16 18 C -0.51 -29.40 9.15 25.60 0.23 -29.16 16 19 H 0.06 3.48 7.99 -2.91 -0.02 3.46 16 20 C 0.03 2.06 5.45 84.66 0.46 2.52 16 21 N -0.93 -59.72 13.96 21.45 0.30 -59.42 16 22 Si 0.94 52.36 24.31 68.60 1.67 54.02 16 23 H -0.28 -16.30 6.92 99.48 0.69 -15.62 16 24 H -0.29 -15.82 7.11 99.48 0.71 -15.11 16 25 H -0.28 -15.72 6.53 99.48 0.65 -15.07 16 26 C 0.13 6.09 5.09 86.36 0.44 6.53 16 27 N -0.34 -11.96 10.73 -53.88 -0.58 -12.54 16 28 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.14 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.25 0.37 8.06 -2.91 -0.02 0.35 16 32 H 0.43 0.52 9.11 -74.06 -0.67 -0.16 16 33 H 0.43 13.04 4.41 -92.71 -0.41 12.63 16 34 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.09 2.24 5.57 -2.39 -0.01 2.22 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.06 2.33 8.14 -2.38 -0.02 2.32 16 40 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 41 H 0.05 2.57 2.35 -2.39 -0.01 2.56 16 42 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -93.79 344.30 2.59 -91.20 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -0.07 Total: 7.09 kcal Atomic # 6 Polarization: 23.38 SS G_CDS: 7.41 Total: 30.80 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -5.93 Total: -132.30 kcal Atomic # 8 Polarization: -50.31 SS G_CDS: -0.50 Total: -50.81 kcal Atomic # 14 Polarization: 52.36 SS G_CDS: 1.67 Total: 54.02 kcal Total: -93.79 2.59 -91.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600932371.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.409 kcal (2) G-P(sol) polarization free energy of solvation -93.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds