Wall clock time and date at job start Tue Mar 31 2020 12:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34122 * 125.66653 * 2 1 4 4 C 1.38193 * 107.52998 * 179.97438 * 3 2 1 5 5 C 1.47086 * 126.46436 * 180.02562 * 4 3 2 6 6 O 1.21548 * 120.00209 * 179.97438 * 5 4 3 7 7 O 1.34776 * 119.99741 * 359.95862 * 5 4 3 8 8 C 1.41871 * 107.07556 * 0.02562 * 4 3 2 9 9 N 1.39772 * 126.08137 * 180.02562 * 8 4 3 10 10 C 1.34773 * 120.00254 * 180.02562 * 9 8 4 11 11 O 1.21589 * 119.99559 * 5.00047 * 10 9 8 12 12 N 1.34773 * 120.00722 * 185.01237 * 10 9 8 13 13 C 1.46927 * 120.62506 * 354.73762 * 12 10 9 14 14 C 1.53189 * 108.77752 * 233.63310 * 13 12 10 15 15 C 1.53037 * 109.34177 * 305.38696 * 14 13 12 16 16 C 1.53040 * 109.54058 * 61.31198 * 15 14 13 17 17 H 1.09001 * 109.49070 * 58.65573 * 16 15 14 18 18 C 1.50704 * 109.49626 * 178.71712 * 16 15 14 19 19 H 1.08002 * 120.00188 * 359.94084 * 18 16 15 20 20 C 1.37873 * 119.99505 * 180.20824 * 18 16 15 21 21 N 1.31515 * 120.00402 * 359.73403 * 20 18 16 22 22 Si 1.86807 * 119.99672 * 179.72592 * 20 18 16 23 23 H 1.48495 * 109.47132 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47031 * 120.00403 * 22 20 18 25 25 H 1.48503 * 109.46968 * 240.00568 * 22 20 18 26 26 C 1.46919 * 120.63449 * 174.76828 * 12 10 9 27 27 N 1.30896 * 107.83433 * 0.25740 * 8 4 3 28 28 H 1.09001 * 109.46613 * 90.00025 * 1 2 3 29 29 H 1.08997 * 109.47408 * 210.00079 * 1 2 3 30 30 H 1.08997 * 109.46708 * 330.00831 * 1 2 3 31 31 H 1.08002 * 126.23764 * 359.97438 * 3 2 1 32 32 H 0.96700 * 116.99614 * 180.02562 * 7 5 4 33 33 H 0.97002 * 120.00366 * 359.97438 * 9 8 4 34 34 H 1.09002 * 109.58963 * 353.42348 * 13 12 10 35 35 H 1.09004 * 109.58520 * 113.84999 * 13 12 10 36 36 H 1.09007 * 109.49538 * 65.32300 * 14 13 12 37 37 H 1.09007 * 109.50131 * 185.41378 * 14 13 12 38 38 H 1.09009 * 109.42745 * 301.30614 * 15 14 13 39 39 H 1.08995 * 109.48543 * 181.35470 * 15 14 13 40 40 H 0.97001 * 119.99861 * 180.02562 * 21 20 18 41 41 H 1.08994 * 109.58994 * 6.57928 * 26 12 10 42 42 H 1.09004 * 109.70094 * 246.22092 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2471 1.0896 0.0000 4 6 3.5603 0.6595 0.0006 5 6 4.7593 1.5115 0.0013 6 8 5.8644 1.0055 0.0023 7 8 4.6324 2.8533 0.0006 8 6 3.5341 -0.7590 0.0003 9 7 4.6482 -1.6029 0.0013 10 6 4.4807 -2.9402 0.0004 11 8 3.3644 -3.4129 -0.0930 12 7 5.5504 -3.7536 0.1032 13 6 6.9125 -3.2027 0.1013 14 6 7.7287 -3.9092 -0.9856 15 6 7.6629 -5.4223 -0.7657 16 6 6.2101 -5.8920 -0.8695 17 1 5.8126 -5.6308 -1.8503 18 6 6.1502 -7.3864 -0.6842 19 1 7.0576 -7.9459 -0.5107 20 6 4.9376 -8.0400 -0.7416 21 7 3.8327 -7.3588 -0.9529 22 14 4.8642 -9.8934 -0.5194 23 1 6.2346 -10.4199 -0.2965 24 1 4.0128 -10.2180 0.6532 25 1 4.2866 -10.5154 -1.7379 26 6 5.3768 -5.2079 0.2187 27 7 2.2808 -1.1368 -0.0059 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3632 0.8901 0.5137 31 1 1.9116 2.1162 -0.0004 32 1 5.4489 3.3714 0.0008 33 1 5.5421 -1.2262 0.0018 34 1 6.8740 -2.1335 -0.1076 35 1 7.3760 -3.3707 1.0735 36 1 7.3171 -3.6662 -1.9653 37 1 8.7662 -3.5788 -0.9342 38 1 8.0524 -5.6621 0.2238 39 1 8.2626 -5.9262 -1.5237 40 1 2.9795 -7.8186 -0.9929 41 1 4.3250 -5.4619 0.0873 42 1 5.7133 -5.5413 1.2004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600932373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:34 Heat of formation + Delta-G solvation = -26.877973 kcal Electronic energy + Delta-G solvation = -27679.621925 eV Core-core repulsion = 23662.114382 eV Total energy + Delta-G solvation = -4017.507542 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.62160 -39.74365 -39.63169 -36.93753 -36.13571 -34.72981 -33.40366 -32.31596 -31.56267 -30.54048 -29.66420 -27.11498 -25.05016 -24.73769 -23.51303 -21.89317 -21.78908 -20.81692 -19.57013 -18.68301 -17.96832 -17.80155 -17.27757 -16.44644 -16.12970 -16.06375 -15.51450 -15.29095 -14.83151 -14.53215 -14.18029 -13.89062 -13.67957 -13.49115 -13.23904 -12.93986 -12.85434 -12.70216 -12.50809 -12.16194 -11.88529 -11.67779 -10.96415 -10.96123 -10.87799 -10.73735 -10.57204 -10.43473 -10.33826 -10.17490 -9.82225 -9.38029 -9.04888 -9.04535 -8.89830 -8.40067 -8.34023 -7.63087 -5.93195 -4.02496 1.17916 2.08446 2.13715 2.86172 3.05871 3.25361 3.34660 3.42264 3.45450 3.94081 4.17681 4.32165 4.47974 4.55227 4.92718 4.99724 5.18646 5.27302 5.35064 5.36768 5.48056 5.55652 5.66482 5.72628 6.05913 6.22986 6.34177 6.37670 6.58783 6.65033 6.70661 6.80310 6.91656 7.01931 7.04941 7.30510 7.37048 7.65456 7.82862 7.84828 7.97659 8.10568 8.45409 8.50963 9.01295 9.17405 9.62916 11.11696 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017061 B = 0.003534 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.781557 B = 7922.246505 C = 9434.908996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.353 5.353 3 C 0.143 3.857 4 C -0.315 4.315 5 C 0.566 3.434 6 O -0.532 6.532 7 O -0.517 6.517 8 C 0.384 3.616 9 N -0.651 5.651 10 C 0.690 3.310 11 O -0.536 6.536 12 N -0.615 5.615 13 C 0.110 3.890 14 C -0.133 4.133 15 C -0.110 4.110 16 C 0.039 3.961 17 H 0.030 0.970 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.878 5.878 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.285 1.285 26 C 0.129 3.871 27 N -0.275 5.275 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.193 0.807 32 H 0.412 0.588 33 H 0.421 0.579 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.263 0.737 41 H 0.124 0.876 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.167 22.485 2.811 22.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.130 5.130 3 C -0.013 4.013 4 C -0.331 4.331 5 C 0.412 3.588 6 O -0.422 6.422 7 O -0.329 6.329 8 C 0.123 3.877 9 N -0.309 5.309 10 C 0.391 3.609 11 O -0.407 6.407 12 N -0.352 5.352 13 C -0.014 4.014 14 C -0.171 4.171 15 C -0.147 4.147 16 C 0.019 3.981 17 H 0.048 0.952 18 C -0.559 4.559 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.515 5.515 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.211 1.211 26 C 0.008 3.992 27 N -0.104 5.104 28 H 0.101 0.899 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.209 0.791 32 H 0.270 0.730 33 H 0.263 0.737 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.142 0.858 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.157 20.585 2.741 21.179 hybrid contribution 1.480 0.338 0.069 1.520 sum -2.676 20.924 2.811 21.281 Atomic orbital electron populations 1.22035 0.72940 1.05144 1.04187 1.48435 1.07535 1.03865 1.53117 1.23120 0.89434 0.94216 0.94504 1.18860 0.91584 0.90689 1.31933 1.19565 0.87684 0.80102 0.71437 1.90831 1.27797 1.74907 1.48680 1.84535 1.42542 1.19358 1.86468 1.18839 0.87820 0.86643 0.94403 1.42691 1.07039 1.04817 1.76384 1.16032 0.85812 0.79962 0.79084 1.91036 1.22355 1.73290 1.54041 1.47814 1.03174 1.08914 1.75266 1.21601 0.83765 0.96407 0.99591 1.21944 0.98446 0.98239 0.98504 1.21617 1.00425 0.92247 1.00438 1.19000 0.89109 0.94731 0.95224 0.95230 1.21107 0.93151 0.91392 1.50255 0.92296 1.25069 0.95887 0.98217 0.94902 1.69916 0.98089 1.35193 1.48293 0.86550 0.78003 0.85827 0.77699 1.19810 1.21012 1.21067 1.22257 1.06614 0.71948 0.98336 1.78311 0.99021 1.02872 1.30189 0.89927 0.88361 0.88973 0.79057 0.72963 0.73652 0.91873 0.91698 0.92116 0.92081 0.93125 0.92977 0.92732 0.85833 0.93911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.68 11.43 59.85 0.68 1.36 16 2 N -0.35 -4.26 3.97 -67.59 -0.27 -4.53 16 3 C 0.14 1.41 11.32 -16.57 -0.19 1.23 16 4 C -0.31 -4.22 6.14 -104.94 -0.64 -4.86 16 5 C 0.57 6.82 8.32 34.32 0.29 7.11 16 6 O -0.53 -7.71 15.99 -19.30 -0.31 -8.02 16 7 O -0.52 -4.00 13.26 -40.70 -0.54 -4.54 16 8 C 0.38 6.78 7.78 -154.47 -1.20 5.58 16 9 N -0.65 -12.24 5.33 -15.30 -0.08 -12.32 16 10 C 0.69 15.63 8.26 -86.92 -0.72 14.92 16 11 O -0.54 -14.35 14.49 5.29 0.08 -14.28 16 12 N -0.61 -13.33 2.97 -178.51 -0.53 -13.86 16 13 C 0.11 1.89 6.39 -3.71 -0.02 1.87 16 14 C -0.13 -2.29 6.08 -26.61 -0.16 -2.45 16 15 C -0.11 -2.25 5.11 -26.69 -0.14 -2.38 16 16 C 0.04 0.98 2.25 -91.65 -0.21 0.78 16 17 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 18 C -0.52 -14.37 8.56 -34.44 -0.29 -14.66 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 20 C 0.06 1.76 5.31 -17.82 -0.09 1.66 16 21 N -0.88 -26.21 11.40 55.43 0.63 -25.57 16 22 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 C 0.13 3.24 5.41 -3.71 -0.02 3.22 16 27 N -0.27 -5.03 10.73 31.61 0.34 -4.69 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.19 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.41 1.39 9.11 45.56 0.42 1.80 16 33 H 0.42 7.09 4.44 -40.82 -0.18 6.91 16 34 H 0.06 0.95 5.65 -51.93 -0.29 0.66 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 41 H 0.12 3.63 5.12 -51.93 -0.27 3.37 16 42 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -38.11 351.21 -7.65 -45.76 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -4.52 Total: 6.81 kcal Atomic # 6 Polarization: 16.08 SS G_CDS: -2.72 Total: 13.36 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: 0.09 Total: -60.97 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.77 Total: -26.83 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -38.11 -7.65 -45.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600932373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.882 kcal (2) G-P(sol) polarization free energy of solvation -38.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds