Wall clock time and date at job start Tue Mar 31 2020 12:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34122 * 125.66653 * 2 1 4 4 C 1.38193 * 107.52998 * 179.97438 * 3 2 1 5 5 C 1.47086 * 126.46436 * 180.02562 * 4 3 2 6 6 O 1.21548 * 120.00209 * 179.97438 * 5 4 3 7 7 O 1.34776 * 119.99741 * 359.95862 * 5 4 3 8 8 C 1.41871 * 107.07556 * 0.02562 * 4 3 2 9 9 N 1.39772 * 126.08137 * 180.02562 * 8 4 3 10 10 C 1.34773 * 120.00254 * 180.02562 * 9 8 4 11 11 O 1.21589 * 119.99559 * 5.00047 * 10 9 8 12 12 N 1.34773 * 120.00722 * 185.01237 * 10 9 8 13 13 C 1.46927 * 120.62506 * 354.73762 * 12 10 9 14 14 C 1.53189 * 108.77752 * 233.63310 * 13 12 10 15 15 C 1.53037 * 109.34177 * 305.38696 * 14 13 12 16 16 C 1.53040 * 109.54058 * 61.31198 * 15 14 13 17 17 H 1.09001 * 109.49070 * 58.65573 * 16 15 14 18 18 C 1.50704 * 109.49626 * 178.71712 * 16 15 14 19 19 H 1.08002 * 120.00188 * 359.94084 * 18 16 15 20 20 C 1.37873 * 119.99505 * 180.20824 * 18 16 15 21 21 N 1.31515 * 120.00402 * 359.73403 * 20 18 16 22 22 Si 1.86807 * 119.99672 * 179.72592 * 20 18 16 23 23 H 1.48495 * 109.47132 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47031 * 120.00403 * 22 20 18 25 25 H 1.48503 * 109.46968 * 240.00568 * 22 20 18 26 26 C 1.46919 * 120.63449 * 174.76828 * 12 10 9 27 27 N 1.30896 * 107.83433 * 0.25740 * 8 4 3 28 28 H 1.09001 * 109.46613 * 90.00025 * 1 2 3 29 29 H 1.08997 * 109.47408 * 210.00079 * 1 2 3 30 30 H 1.08997 * 109.46708 * 330.00831 * 1 2 3 31 31 H 1.08002 * 126.23764 * 359.97438 * 3 2 1 32 32 H 0.96700 * 116.99614 * 180.02562 * 7 5 4 33 33 H 0.97002 * 120.00366 * 359.97438 * 9 8 4 34 34 H 1.09002 * 109.58963 * 353.42348 * 13 12 10 35 35 H 1.09004 * 109.58520 * 113.84999 * 13 12 10 36 36 H 1.09007 * 109.49538 * 65.32300 * 14 13 12 37 37 H 1.09007 * 109.50131 * 185.41378 * 14 13 12 38 38 H 1.09009 * 109.42745 * 301.30614 * 15 14 13 39 39 H 1.08995 * 109.48543 * 181.35470 * 15 14 13 40 40 H 0.97001 * 119.99861 * 180.02562 * 21 20 18 41 41 H 1.08994 * 109.58994 * 6.57928 * 26 12 10 42 42 H 1.09004 * 109.70094 * 246.22092 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2471 1.0896 0.0000 4 6 3.5603 0.6595 0.0006 5 6 4.7593 1.5115 0.0013 6 8 5.8644 1.0055 0.0023 7 8 4.6324 2.8533 0.0006 8 6 3.5341 -0.7590 0.0003 9 7 4.6482 -1.6029 0.0013 10 6 4.4807 -2.9402 0.0004 11 8 3.3644 -3.4129 -0.0930 12 7 5.5504 -3.7536 0.1032 13 6 6.9125 -3.2027 0.1013 14 6 7.7287 -3.9092 -0.9856 15 6 7.6629 -5.4223 -0.7657 16 6 6.2101 -5.8920 -0.8695 17 1 5.8126 -5.6308 -1.8503 18 6 6.1502 -7.3864 -0.6842 19 1 7.0576 -7.9459 -0.5107 20 6 4.9376 -8.0400 -0.7416 21 7 3.8327 -7.3588 -0.9529 22 14 4.8642 -9.8934 -0.5194 23 1 6.2346 -10.4199 -0.2965 24 1 4.0128 -10.2180 0.6532 25 1 4.2866 -10.5154 -1.7379 26 6 5.3768 -5.2079 0.2187 27 7 2.2808 -1.1368 -0.0059 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3632 0.8901 0.5137 31 1 1.9116 2.1162 -0.0004 32 1 5.4489 3.3714 0.0008 33 1 5.5421 -1.2262 0.0018 34 1 6.8740 -2.1335 -0.1076 35 1 7.3760 -3.3707 1.0735 36 1 7.3171 -3.6662 -1.9653 37 1 8.7662 -3.5788 -0.9342 38 1 8.0524 -5.6621 0.2238 39 1 8.2626 -5.9262 -1.5237 40 1 2.9795 -7.8186 -0.9929 41 1 4.3250 -5.4619 0.0873 42 1 5.7133 -5.5413 1.2004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600932373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:33 Heat of formation + Delta-G solvation = -55.361371 kcal Electronic energy + Delta-G solvation = -27680.857058 eV Core-core repulsion = 23662.114382 eV Total energy + Delta-G solvation = -4018.742675 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.69205 -41.27899 -40.56284 -38.62039 -36.98478 -36.15427 -35.27839 -33.76797 -32.99396 -31.63467 -31.48196 -28.03259 -27.03952 -26.29354 -24.53751 -23.51493 -23.08622 -21.97407 -21.11885 -20.19878 -19.23592 -18.72601 -18.59294 -18.14270 -17.55362 -17.14397 -16.71036 -16.43985 -16.35662 -16.02107 -15.77406 -15.29015 -15.25805 -14.66126 -14.61612 -14.32682 -14.17208 -13.90296 -13.68177 -13.55436 -13.44820 -12.90966 -12.69820 -12.45491 -12.31422 -12.21925 -12.01787 -11.95610 -11.88549 -11.66414 -11.61649 -11.16061 -10.97531 -10.84079 -10.53059 -10.14501 -9.67991 -9.28211 -8.09243 -6.27380 0.36775 0.94285 1.07380 1.40669 1.41663 1.54330 1.72117 1.97181 2.29990 2.38211 2.42755 2.84573 3.18914 3.35872 3.84854 3.96307 4.09506 4.19228 4.24311 4.44572 4.46692 4.52425 4.56327 4.69704 4.75053 4.75676 4.76632 4.83110 5.07905 5.20459 5.25326 5.27800 5.49332 5.54454 5.61113 5.66618 5.77401 5.90337 5.92140 6.02659 6.33401 6.47793 6.85671 6.96373 7.12559 7.42494 7.48115 8.94202 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017061 B = 0.003534 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.781557 B = 7922.246505 C = 9434.908996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.352 5.352 3 C 0.179 3.821 4 C -0.336 4.336 5 C 0.574 3.426 6 O -0.564 6.564 7 O -0.497 6.497 8 C 0.350 3.650 9 N -0.641 5.641 10 C 0.686 3.314 11 O -0.589 6.589 12 N -0.619 5.619 13 C 0.106 3.894 14 C -0.125 4.125 15 C -0.103 4.103 16 C 0.037 3.963 17 H -0.016 1.016 18 C -0.534 4.534 19 H 0.065 0.935 20 C 0.008 3.992 21 N -0.915 5.915 22 Si 0.960 3.040 23 H -0.258 1.258 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.143 3.857 27 N -0.340 5.340 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.144 0.856 31 H 0.254 0.746 32 H 0.434 0.566 33 H 0.429 0.571 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.108 0.892 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.259 0.741 41 H 0.077 0.923 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.152 25.366 3.419 25.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.129 5.129 3 C 0.023 3.977 4 C -0.351 4.351 5 C 0.421 3.579 6 O -0.457 6.457 7 O -0.311 6.311 8 C 0.091 3.909 9 N -0.300 5.300 10 C 0.387 3.613 11 O -0.465 6.465 12 N -0.355 5.355 13 C -0.016 4.016 14 C -0.163 4.163 15 C -0.141 4.141 16 C 0.018 3.982 17 H 0.002 0.998 18 C -0.572 4.572 19 H 0.084 0.916 20 C -0.192 4.192 21 N -0.554 5.554 22 Si 0.786 3.214 23 H -0.182 1.182 24 H -0.209 1.209 25 H -0.209 1.209 26 C 0.021 3.979 27 N -0.170 5.170 28 H 0.113 0.887 29 H 0.099 0.901 30 H 0.162 0.838 31 H 0.270 0.730 32 H 0.296 0.704 33 H 0.273 0.727 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.066 0.934 37 H 0.126 0.874 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.102 23.547 3.350 23.985 hybrid contribution 1.057 -0.385 -0.136 1.133 sum -2.045 23.162 3.214 23.473 Atomic orbital electron populations 1.22491 0.70240 1.06849 1.05590 1.48748 1.08862 1.02947 1.52313 1.23972 0.87577 0.95707 0.90406 1.19077 0.93852 0.88925 1.33257 1.19334 0.86626 0.81211 0.70717 1.90810 1.28775 1.75816 1.50301 1.84462 1.43973 1.17128 1.85495 1.19205 0.87399 0.88373 0.95935 1.42341 1.08186 1.03369 1.76064 1.16224 0.85169 0.81249 0.78655 1.90986 1.24479 1.74642 1.56385 1.47733 1.05095 1.07621 1.75057 1.21935 0.81156 0.97585 1.00959 1.21910 1.01068 0.95630 0.97698 1.21501 0.96561 0.94770 1.01236 1.18934 0.92389 0.94152 0.92723 0.99788 1.21536 0.93323 0.92838 1.49530 0.91644 1.25948 0.95505 1.03061 0.94650 1.70133 0.98548 1.37029 1.49694 0.85469 0.78540 0.79997 0.77427 1.18214 1.20869 1.20940 1.21694 1.03728 0.74464 0.98007 1.78122 1.00338 1.07172 1.31320 0.88681 0.90103 0.83796 0.73029 0.70404 0.72683 0.89472 0.89354 0.93450 0.87388 0.91944 0.92597 0.93223 0.90518 0.93993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.03 11.43 127.77 1.46 2.49 16 2 N -0.35 -8.00 3.97 -367.75 -1.46 -9.46 16 3 C 0.18 2.94 11.32 84.33 0.95 3.90 16 4 C -0.34 -8.48 6.14 -20.07 -0.12 -8.60 16 5 C 0.57 12.53 8.32 70.14 0.58 13.11 16 6 O -0.56 -15.55 15.99 19.68 0.31 -15.23 16 7 O -0.50 -5.71 13.26 -56.87 -0.75 -6.46 16 8 C 0.35 12.67 7.78 133.92 1.04 13.71 16 9 N -0.64 -24.94 5.33 -320.59 -1.71 -26.65 16 10 C 0.69 32.88 8.26 179.06 1.48 34.36 16 11 O -0.59 -34.13 14.49 -4.00 -0.06 -34.19 16 12 N -0.62 -27.86 2.97 -836.93 -2.49 -30.34 16 13 C 0.11 3.50 6.39 86.36 0.55 4.05 16 14 C -0.13 -4.08 6.08 30.67 0.19 -3.90 16 15 C -0.10 -4.16 5.11 30.62 0.16 -4.01 16 16 C 0.04 1.98 2.25 -11.46 -0.03 1.95 16 17 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 18 C -0.53 -30.27 8.56 25.60 0.22 -30.05 16 19 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 20 C 0.01 0.44 5.31 84.65 0.45 0.89 16 21 N -0.92 -57.84 11.40 21.45 0.24 -57.60 16 22 Si 0.96 45.48 29.54 68.60 2.03 47.50 16 23 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 25 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 26 C 0.14 7.62 5.41 86.36 0.47 8.09 16 27 N -0.34 -12.91 10.73 -53.89 -0.58 -13.49 16 28 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.25 0.80 8.06 -2.91 -0.02 0.78 16 32 H 0.43 1.19 9.11 -74.06 -0.67 0.52 16 33 H 0.43 14.56 4.44 -92.71 -0.41 14.15 16 34 H 0.09 2.49 5.65 -2.39 -0.01 2.48 16 35 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 36 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 38 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 39 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 41 H 0.08 4.87 5.12 -2.39 -0.01 4.85 16 42 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -92.71 351.21 2.94 -89.77 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.00 Total: 20.15 kcal Atomic # 6 Polarization: 28.60 SS G_CDS: 7.40 Total: 36.00 kcal Atomic # 7 Polarization: -131.55 SS G_CDS: -5.99 Total: -137.54 kcal Atomic # 8 Polarization: -55.39 SS G_CDS: -0.50 Total: -55.88 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -92.71 2.94 -89.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600932373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.411 kcal (2) G-P(sol) polarization free energy of solvation -92.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds