Wall clock time and date at job start Tue Mar 31 2020 12:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40027 * 126.09031 * 2 1 4 4 C 1.31326 * 108.77455 * 180.26202 * 3 2 1 5 5 N 1.40230 * 125.68232 * 179.97438 * 4 3 2 6 6 C 1.34774 * 120.00178 * 180.02562 * 5 4 3 7 7 O 1.21591 * 120.00079 * 354.85995 * 6 5 4 8 8 N 1.34779 * 120.00369 * 174.86192 * 6 5 4 9 9 C 1.46926 * 120.63424 * 184.94439 * 8 6 5 10 10 C 1.52760 * 109.00904 * 233.58168 * 9 8 6 11 11 C 1.53042 * 109.38588 * 305.58880 * 10 9 8 12 12 C 1.50698 * 109.45128 * 181.25221 * 11 10 9 13 13 H 1.07998 * 120.00234 * 239.94384 * 12 11 10 14 14 C 1.37880 * 119.99822 * 59.93696 * 12 11 10 15 15 N 1.31509 * 120.00059 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99862 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47204 * 60.00390 * 16 14 12 18 18 H 1.48502 * 109.46950 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47063 * 300.00182 * 16 14 12 20 20 C 1.53041 * 109.53512 * 61.23973 * 11 10 9 21 21 C 1.46927 * 120.62701 * 5.22500 * 8 6 5 22 22 C 1.39777 * 108.63748 * 0.02562 * 4 3 2 23 23 C 1.36741 * 126.08446 * 180.30656 * 2 1 3 24 24 C 1.47010 * 126.43356 * 359.70868 * 23 2 1 25 25 O 1.21553 * 119.99887 * 179.97438 * 24 23 2 26 26 O 1.34817 * 120.00164 * 359.97438 * 24 23 2 27 27 H 1.09004 * 109.47345 * 269.68604 * 1 2 3 28 28 H 1.08992 * 109.47237 * 29.68922 * 1 2 3 29 29 H 1.09010 * 109.47041 * 149.69068 * 1 2 3 30 30 H 0.97005 * 120.00130 * 0.02562 * 5 4 3 31 31 H 1.09000 * 109.58640 * 353.41614 * 9 8 6 32 32 H 1.09000 * 109.58434 * 113.84166 * 9 8 6 33 33 H 1.09002 * 109.56567 * 185.55088 * 10 9 8 34 34 H 1.09000 * 109.38539 * 65.51677 * 10 9 8 35 35 H 1.09002 * 109.45911 * 301.22295 * 11 10 9 36 36 H 0.96999 * 120.00459 * 180.02562 * 15 14 12 37 37 H 1.09003 * 109.49692 * 178.68351 * 20 11 10 38 38 H 1.08993 * 109.52576 * 58.60307 * 20 11 10 39 39 H 1.09006 * 109.58905 * 246.15733 * 21 8 6 40 40 H 1.09004 * 109.59161 * 6.43972 * 21 8 6 41 41 H 1.08005 * 126.18230 * 180.02562 * 22 4 3 42 42 H 0.96705 * 117.00074 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2898 1.1315 0.0000 4 6 3.5436 0.7407 -0.0057 5 7 4.6634 1.5846 -0.0081 6 6 5.9041 1.0581 -0.0145 7 8 6.0544 -0.1451 0.0760 8 7 6.9782 1.8652 -0.1213 9 6 8.3298 1.3011 -0.2385 10 6 9.2202 1.9144 0.8406 11 6 9.1646 3.4404 0.7385 12 6 10.0664 4.0465 1.7827 13 1 9.6563 4.7052 2.5339 14 6 11.4151 3.7600 1.7791 15 7 11.9145 2.9582 0.8641 16 14 12.5328 4.5107 3.0739 17 1 12.0801 4.0885 4.4237 18 1 13.9268 4.0493 2.8521 19 1 12.4803 5.9914 2.9747 20 6 7.7281 3.9165 0.9668 21 6 6.8203 3.3260 -0.1166 22 6 3.5758 -0.6567 -0.0102 23 6 2.2704 -1.1051 -0.0059 24 6 1.8287 -2.5073 -0.0074 25 8 2.6502 -3.4031 -0.0134 26 8 0.5127 -2.7995 -0.0022 27 1 -0.3634 -0.0056 1.0277 28 1 -0.3633 0.8927 -0.5090 29 1 -0.3634 -0.8873 -0.5187 30 1 4.5452 2.5475 -0.0050 31 1 8.2875 0.2202 -0.1047 32 1 8.7389 1.5339 -1.2217 33 1 10.2475 1.5776 0.7012 34 1 8.8653 1.6024 1.8229 35 1 9.4966 3.7503 -0.2524 36 1 12.8633 2.7563 0.8617 37 1 7.6934 5.0049 0.9171 38 1 7.3864 3.5861 1.9476 39 1 7.1038 3.7273 -1.0896 40 1 5.7818 3.5807 0.0951 41 1 4.4620 -1.2740 -0.0149 42 1 0.2708 -3.7359 -0.0030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601013740.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:45 Heat of formation + Delta-G solvation = -23.174427 kcal Electronic energy + Delta-G solvation = -26986.460493 eV Core-core repulsion = 22969.113549 eV Total energy + Delta-G solvation = -4017.346945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.71270 -40.35179 -39.76046 -37.15901 -36.56069 -35.09263 -33.69197 -32.41384 -31.05477 -30.81366 -30.07992 -26.86370 -26.03265 -24.90625 -23.29556 -22.57955 -21.37248 -20.97397 -20.02560 -18.89727 -18.73745 -17.93589 -17.38576 -16.47624 -16.39179 -16.18242 -15.55492 -15.35713 -15.06119 -14.71643 -14.52781 -14.08203 -13.88928 -13.62271 -13.34849 -13.13745 -12.82373 -12.70272 -12.63592 -12.33893 -12.04024 -11.88237 -11.42837 -11.18892 -10.95453 -10.88228 -10.86418 -10.70355 -10.47288 -10.09193 -9.83650 -9.59579 -9.24129 -9.18351 -8.96364 -8.50349 -8.37149 -7.98833 -6.03209 -4.09911 0.63362 1.78740 2.14294 2.37121 2.71807 2.84907 3.29856 3.35238 3.37440 3.47584 3.91486 4.34644 4.40524 4.56325 4.91303 5.04567 5.16114 5.21106 5.26819 5.33299 5.41916 5.67694 5.74509 5.93767 5.97177 6.06856 6.18388 6.36678 6.44653 6.49729 6.54772 6.62705 6.72306 6.85585 6.92253 7.17418 7.26295 7.40305 7.50288 7.68242 7.90598 8.00961 8.08084 8.38277 8.64791 8.92999 9.55324 11.02292 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029113 B = 0.002466 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.537222 B =11353.328064 C =11845.673822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.346 5.346 3 N -0.292 5.292 4 C 0.319 3.681 5 N -0.651 5.651 6 C 0.712 3.288 7 O -0.574 6.574 8 N -0.607 5.607 9 C 0.126 3.874 10 C -0.125 4.125 11 C 0.049 3.951 12 C -0.515 4.515 13 H 0.054 0.946 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.891 3.109 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.278 1.278 20 C -0.124 4.124 21 C 0.109 3.891 22 C -0.165 4.165 23 C 0.037 3.963 24 C 0.557 3.443 25 O -0.485 6.485 26 O -0.515 6.515 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.413 0.587 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.039 0.961 35 H 0.028 0.972 36 H 0.262 0.738 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.191 0.809 42 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.159 -5.852 -4.149 24.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.134 5.134 3 N -0.126 5.126 4 C 0.064 3.936 5 N -0.306 5.306 6 C 0.413 3.587 7 O -0.451 6.451 8 N -0.342 5.342 9 C 0.004 3.996 10 C -0.164 4.164 11 C 0.031 3.969 12 C -0.553 4.553 13 H 0.072 0.928 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.162 4.162 21 C -0.014 4.014 22 C -0.197 4.197 23 C -0.089 4.089 24 C 0.398 3.602 25 O -0.370 6.370 26 O -0.329 6.329 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.119 0.881 30 H 0.252 0.748 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.208 0.792 42 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -23.330 -5.690 -4.160 24.372 hybrid contribution 0.828 -0.176 0.796 1.162 sum -22.502 -5.865 -3.364 23.496 Atomic orbital electron populations 1.22068 0.72692 1.05042 1.03913 1.48484 1.06354 1.01534 1.57046 1.77319 0.99491 1.06830 1.29005 1.18548 0.86447 0.89662 0.98905 1.42020 1.01975 1.09426 1.77137 1.15638 0.79564 0.85335 0.78179 1.90823 1.84269 1.12737 1.57232 1.47498 1.06012 1.06111 1.74622 1.21808 0.78559 0.98739 1.00456 1.21978 1.00510 0.98723 0.95170 1.18628 0.89057 0.91683 0.97540 1.21130 0.92431 1.28163 1.13562 0.92780 1.24956 0.98138 0.95100 0.95721 1.69818 1.13272 1.35752 1.34023 0.86676 0.79728 0.79548 0.82146 1.20341 1.21299 1.20344 1.22025 0.98159 0.99473 0.96589 1.21837 0.99009 0.79511 1.01082 1.22345 0.96130 0.93481 1.07791 1.20148 0.91374 0.85572 1.11804 1.19416 0.80291 0.87510 0.73019 1.91007 1.54144 1.47077 1.44744 1.84573 1.26062 1.36043 1.86189 0.90422 0.89064 0.88105 0.74764 0.90127 0.92036 0.87587 0.94178 0.95353 0.92838 0.91873 0.92732 0.91272 0.92220 0.79186 0.72145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.67 10.94 59.85 0.65 1.32 16 2 N -0.35 -3.93 4.07 -63.99 -0.26 -4.19 16 3 N -0.29 -3.96 12.56 31.34 0.39 -3.57 16 4 C 0.32 4.78 8.07 -154.47 -1.25 3.53 16 5 N -0.65 -9.49 5.36 -15.63 -0.08 -9.58 16 6 C 0.71 12.42 8.26 -86.92 -0.72 11.70 16 7 O -0.57 -11.52 12.88 5.29 0.07 -11.45 16 8 N -0.61 -10.47 2.98 -178.76 -0.53 -11.01 16 9 C 0.13 2.41 6.41 -3.93 -0.03 2.39 16 10 C -0.13 -2.81 5.14 -26.83 -0.14 -2.94 16 11 C 0.05 1.13 2.07 -91.73 -0.19 0.94 16 12 C -0.51 -13.42 8.56 -34.44 -0.29 -13.72 16 13 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 14 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 15 N -0.89 -24.38 11.31 55.43 0.63 -23.75 16 16 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.12 -2.29 5.30 -26.61 -0.14 -2.43 16 21 C 0.11 1.64 6.39 -3.71 -0.02 1.61 16 22 C -0.17 -2.56 9.41 -39.08 -0.37 -2.92 16 23 C 0.04 0.47 6.95 -82.20 -0.57 -0.10 16 24 C 0.56 6.04 8.31 34.29 0.28 6.33 16 25 O -0.49 -6.81 17.68 -19.31 -0.34 -7.15 16 26 O -0.52 -3.05 10.93 -40.81 -0.45 -3.50 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.10 0.49 6.22 -51.92 -0.32 0.17 16 30 H 0.41 4.99 6.31 -40.82 -0.26 4.74 16 31 H 0.08 1.57 6.99 -51.93 -0.36 1.21 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.11 2.66 6.03 -51.93 -0.31 2.35 16 34 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 0.71 5.64 -51.93 -0.29 0.42 16 41 H 0.19 3.34 5.89 -52.48 -0.31 3.03 16 42 H 0.42 0.56 9.11 45.56 0.42 0.97 16 LS Contribution 347.11 15.07 5.23 5.23 Total: -1.00 -32.85 347.11 -7.60 -40.45 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -4.37 Total: 5.52 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -2.87 Total: 7.26 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 0.14 Total: -52.10 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.72 Total: -22.10 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.85 -7.60 -40.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601013740.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.278 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds