Wall clock time and date at job start Tue Mar 31 2020 12:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40027 * 126.09031 * 2 1 4 4 C 1.31326 * 108.77455 * 180.26202 * 3 2 1 5 5 N 1.40230 * 125.68232 * 179.97438 * 4 3 2 6 6 C 1.34774 * 120.00178 * 180.02562 * 5 4 3 7 7 O 1.21591 * 120.00079 * 354.85995 * 6 5 4 8 8 N 1.34779 * 120.00369 * 174.86192 * 6 5 4 9 9 C 1.46926 * 120.63424 * 184.94439 * 8 6 5 10 10 C 1.52760 * 109.00904 * 233.58168 * 9 8 6 11 11 C 1.53042 * 109.38588 * 305.58880 * 10 9 8 12 12 C 1.50698 * 109.45128 * 181.25221 * 11 10 9 13 13 H 1.07998 * 120.00234 * 239.94384 * 12 11 10 14 14 C 1.37880 * 119.99822 * 59.93696 * 12 11 10 15 15 N 1.31509 * 120.00059 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99862 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47204 * 60.00390 * 16 14 12 18 18 H 1.48502 * 109.46950 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47063 * 300.00182 * 16 14 12 20 20 C 1.53041 * 109.53512 * 61.23973 * 11 10 9 21 21 C 1.46927 * 120.62701 * 5.22500 * 8 6 5 22 22 C 1.39777 * 108.63748 * 0.02562 * 4 3 2 23 23 C 1.36741 * 126.08446 * 180.30656 * 2 1 3 24 24 C 1.47010 * 126.43356 * 359.70868 * 23 2 1 25 25 O 1.21553 * 119.99887 * 179.97438 * 24 23 2 26 26 O 1.34817 * 120.00164 * 359.97438 * 24 23 2 27 27 H 1.09004 * 109.47345 * 269.68604 * 1 2 3 28 28 H 1.08992 * 109.47237 * 29.68922 * 1 2 3 29 29 H 1.09010 * 109.47041 * 149.69068 * 1 2 3 30 30 H 0.97005 * 120.00130 * 0.02562 * 5 4 3 31 31 H 1.09000 * 109.58640 * 353.41614 * 9 8 6 32 32 H 1.09000 * 109.58434 * 113.84166 * 9 8 6 33 33 H 1.09002 * 109.56567 * 185.55088 * 10 9 8 34 34 H 1.09000 * 109.38539 * 65.51677 * 10 9 8 35 35 H 1.09002 * 109.45911 * 301.22295 * 11 10 9 36 36 H 0.96999 * 120.00459 * 180.02562 * 15 14 12 37 37 H 1.09003 * 109.49692 * 178.68351 * 20 11 10 38 38 H 1.08993 * 109.52576 * 58.60307 * 20 11 10 39 39 H 1.09006 * 109.58905 * 246.15733 * 21 8 6 40 40 H 1.09004 * 109.59161 * 6.43972 * 21 8 6 41 41 H 1.08005 * 126.18230 * 180.02562 * 22 4 3 42 42 H 0.96705 * 117.00074 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2898 1.1315 0.0000 4 6 3.5436 0.7407 -0.0057 5 7 4.6634 1.5846 -0.0081 6 6 5.9041 1.0581 -0.0145 7 8 6.0544 -0.1451 0.0760 8 7 6.9782 1.8652 -0.1213 9 6 8.3298 1.3011 -0.2385 10 6 9.2202 1.9144 0.8406 11 6 9.1646 3.4404 0.7385 12 6 10.0664 4.0465 1.7827 13 1 9.6563 4.7052 2.5339 14 6 11.4151 3.7600 1.7791 15 7 11.9145 2.9582 0.8641 16 14 12.5328 4.5107 3.0739 17 1 12.0801 4.0885 4.4237 18 1 13.9268 4.0493 2.8521 19 1 12.4803 5.9914 2.9747 20 6 7.7281 3.9165 0.9668 21 6 6.8203 3.3260 -0.1166 22 6 3.5758 -0.6567 -0.0102 23 6 2.2704 -1.1051 -0.0059 24 6 1.8287 -2.5073 -0.0074 25 8 2.6502 -3.4031 -0.0134 26 8 0.5127 -2.7995 -0.0022 27 1 -0.3634 -0.0056 1.0277 28 1 -0.3633 0.8927 -0.5090 29 1 -0.3634 -0.8873 -0.5187 30 1 4.5452 2.5475 -0.0050 31 1 8.2875 0.2202 -0.1047 32 1 8.7389 1.5339 -1.2217 33 1 10.2475 1.5776 0.7012 34 1 8.8653 1.6024 1.8229 35 1 9.4966 3.7503 -0.2524 36 1 12.8633 2.7563 0.8617 37 1 7.6934 5.0049 0.9171 38 1 7.3864 3.5861 1.9476 39 1 7.1038 3.7273 -1.0896 40 1 5.7818 3.5807 0.0951 41 1 4.4620 -1.2740 -0.0149 42 1 0.2708 -3.7359 -0.0030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601013740.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:45 Heat of formation + Delta-G solvation = -45.659505 kcal Electronic energy + Delta-G solvation = -26987.435519 eV Core-core repulsion = 22969.113549 eV Total energy + Delta-G solvation = -4018.321971 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.73632 -41.52569 -40.75942 -38.67392 -37.30579 -36.30553 -35.41190 -33.56318 -32.68551 -31.86397 -31.55664 -28.22361 -27.28926 -25.85617 -24.87928 -24.06055 -22.71632 -21.89613 -21.40333 -20.27720 -19.73382 -19.01520 -18.46740 -18.27023 -17.38770 -17.34897 -16.73512 -16.57499 -16.38738 -16.01298 -15.81488 -15.31900 -14.92246 -14.86151 -14.66193 -14.59578 -14.28137 -14.11425 -13.70039 -13.40649 -13.26310 -13.00051 -12.79709 -12.77055 -12.50182 -12.36595 -12.15270 -11.95095 -11.92909 -11.88521 -11.40523 -11.29430 -10.93889 -10.78335 -10.38132 -10.24110 -9.75576 -9.26449 -8.05509 -6.18691 -0.32207 0.79801 1.05418 1.43605 1.44733 1.45257 1.51548 1.72472 1.87171 2.17746 2.45636 2.69879 3.21488 3.49129 3.76258 3.99147 4.05905 4.28735 4.33698 4.39878 4.46595 4.51432 4.55959 4.60496 4.73344 4.79708 4.86759 4.96333 4.98824 5.19147 5.22648 5.32812 5.42447 5.47210 5.54693 5.62414 5.66735 5.79346 6.02007 6.14421 6.27364 6.41220 6.77452 6.81406 6.92603 7.30798 7.49224 8.97766 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029113 B = 0.002466 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.537222 B =11353.328064 C =11845.673822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.328 5.328 3 N -0.293 5.293 4 C 0.303 3.697 5 N -0.637 5.637 6 C 0.712 3.288 7 O -0.604 6.604 8 N -0.609 5.609 9 C 0.139 3.861 10 C -0.114 4.114 11 C 0.045 3.955 12 C -0.532 4.532 13 H 0.052 0.948 14 C 0.014 3.986 15 N -0.914 5.914 16 Si 0.948 3.052 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.270 1.270 20 C -0.117 4.117 21 C 0.112 3.888 22 C -0.204 4.204 23 C 0.044 3.956 24 C 0.571 3.429 25 O -0.523 6.523 26 O -0.490 6.490 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.121 0.879 30 H 0.425 0.575 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.021 0.979 35 H 0.008 0.992 36 H 0.260 0.740 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.162 0.838 42 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.455 -5.086 -4.191 27.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.116 5.116 3 N -0.128 5.128 4 C 0.050 3.950 5 N -0.292 5.292 6 C 0.413 3.587 7 O -0.483 6.483 8 N -0.344 5.344 9 C 0.016 3.984 10 C -0.153 4.153 11 C 0.026 3.974 12 C -0.570 4.570 13 H 0.070 0.930 14 C -0.185 4.185 15 N -0.554 5.554 16 Si 0.774 3.226 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.195 1.195 20 C -0.155 4.155 21 C -0.010 4.010 22 C -0.237 4.237 23 C -0.084 4.084 24 C 0.412 3.588 25 O -0.410 6.410 26 O -0.305 6.305 27 H 0.115 0.885 28 H 0.127 0.873 29 H 0.139 0.861 30 H 0.267 0.733 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.040 0.960 35 H 0.026 0.974 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.180 0.820 42 H 0.307 0.693 Dipole moment (debyes) X Y Z Total from point charges -26.714 -4.885 -4.201 27.480 hybrid contribution 1.650 -0.466 0.823 1.901 sum -25.065 -5.352 -3.379 25.852 Atomic orbital electron populations 1.22583 0.69572 1.06948 1.05771 1.48961 1.07808 1.00512 1.54295 1.77279 0.98895 1.07687 1.28900 1.18581 0.86837 0.89469 1.00140 1.41686 1.01043 1.09969 1.76551 1.15675 0.80271 0.84858 0.77886 1.90826 1.84879 1.14223 1.58367 1.47403 1.05159 1.07065 1.74767 1.21463 0.79344 0.98108 0.99462 1.21732 0.99445 0.98827 0.95253 1.18613 0.91584 0.91641 0.95533 1.21557 0.93250 1.28086 1.14133 0.92978 1.25677 0.99637 0.95659 0.97517 1.69952 1.13301 1.36749 1.35391 0.85773 0.77918 0.79082 0.79820 1.20231 1.21251 1.19523 1.21876 0.95773 1.00426 0.97407 1.21946 1.00578 0.77770 1.00668 1.22111 0.96686 0.93829 1.11066 1.20230 0.90879 0.86932 1.10378 1.19092 0.81348 0.86232 0.72118 1.91006 1.55611 1.47815 1.46587 1.84503 1.22701 1.38396 1.84918 0.88462 0.87346 0.86113 0.73298 0.90889 0.91267 0.90655 0.96040 0.97368 0.93064 0.90482 0.93605 0.89656 0.88206 0.82049 0.69263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 10.94 127.77 1.40 2.19 16 2 N -0.33 -6.60 4.07 -356.38 -1.45 -8.05 16 3 N -0.29 -7.34 12.56 -54.76 -0.69 -8.03 16 4 C 0.30 8.85 8.07 133.11 1.07 9.92 16 5 N -0.64 -17.93 5.36 -321.63 -1.72 -19.65 16 6 C 0.71 24.81 8.26 179.05 1.48 26.29 16 7 O -0.60 -25.08 12.88 -4.00 -0.05 -25.13 16 8 N -0.61 -20.75 2.98 -837.72 -2.50 -23.25 16 9 C 0.14 5.45 6.41 86.22 0.55 6.00 16 10 C -0.11 -5.29 5.14 30.53 0.16 -5.13 16 11 C 0.04 2.09 2.07 -11.51 -0.02 2.07 16 12 C -0.53 -28.16 8.56 25.60 0.22 -27.94 16 13 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 14 C 0.01 0.75 5.30 84.66 0.45 1.20 16 15 N -0.91 -51.49 11.31 21.45 0.24 -51.24 16 16 Si 0.95 43.01 29.54 68.60 2.03 45.04 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 C -0.12 -4.19 5.30 30.67 0.16 -4.03 16 21 C 0.11 3.17 6.39 86.36 0.55 3.72 16 22 C -0.20 -6.41 9.41 22.59 0.21 -6.20 16 23 C 0.04 1.08 6.95 40.63 0.28 1.36 16 24 C 0.57 11.42 8.31 70.12 0.58 12.00 16 25 O -0.52 -14.50 17.68 19.66 0.35 -14.15 16 26 O -0.49 -4.04 10.93 -57.29 -0.63 -4.67 16 27 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.12 0.63 6.22 -2.38 -0.01 0.61 16 30 H 0.43 9.30 6.31 -92.70 -0.59 8.72 16 31 H 0.07 2.97 6.99 -2.39 -0.02 2.96 16 32 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.08 3.98 6.03 -2.39 -0.01 3.96 16 34 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 37 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 40 H 0.10 2.04 5.64 -2.38 -0.01 2.02 16 41 H 0.16 6.05 5.89 -2.91 -0.02 6.03 16 42 H 0.44 -0.53 9.11 -74.05 -0.67 -1.21 16 Total: -1.00 -74.50 347.11 2.51 -71.99 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -0.16 Total: 15.70 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 7.10 Total: 21.44 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -6.11 Total: -110.22 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -0.33 Total: -43.95 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -74.50 2.51 -71.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601013740.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.326 kcal (2) G-P(sol) polarization free energy of solvation -74.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds