Wall clock time and date at job start Tue Mar 31 2020 12:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40029 * 126.08361 * 2 1 4 4 C 1.31339 * 108.76508 * 179.97438 * 3 2 1 5 5 N 1.40237 * 125.67625 * 179.97438 * 4 3 2 6 6 C 1.34772 * 119.99894 * 180.02562 * 5 4 3 7 7 O 1.21593 * 119.99837 * 5.21320 * 6 5 4 8 8 N 1.34776 * 119.99976 * 185.21568 * 6 5 4 9 9 C 1.46926 * 120.63024 * 354.96198 * 8 6 5 10 10 C 1.53188 * 108.77559 * 126.39489 * 9 8 6 11 11 C 1.53044 * 109.31641 * 54.63283 * 10 9 8 12 12 C 1.53040 * 109.53639 * 298.63888 * 11 10 9 13 13 H 1.09002 * 109.49430 * 301.37729 * 12 11 10 14 14 C 1.50694 * 109.49591 * 181.31722 * 12 11 10 15 15 H 1.08000 * 120.00315 * 0.05666 * 14 12 11 16 16 C 1.37879 * 120.00103 * 180.34250 * 14 12 11 17 17 N 1.31508 * 120.00349 * 179.72377 * 16 14 12 18 18 Si 1.86807 * 119.99803 * 359.71601 * 16 14 12 19 19 H 1.48501 * 109.46874 * 90.00446 * 18 16 14 20 20 H 1.48495 * 109.47121 * 210.00257 * 18 16 14 21 21 H 1.48494 * 109.47257 * 330.00599 * 18 16 14 22 22 C 1.46934 * 120.60639 * 174.94137 * 8 6 5 23 23 C 1.39764 * 108.64388 * 0.23859 * 4 3 2 24 24 C 1.36728 * 126.08888 * 179.97438 * 2 1 3 25 25 C 1.47023 * 126.43197 * 0.06152 * 24 2 1 26 26 O 1.21553 * 120.00014 * 179.97438 * 25 24 2 27 27 O 1.34816 * 119.99986 * 359.97438 * 25 24 2 28 28 H 1.08997 * 109.46928 * 90.03168 * 1 2 3 29 29 H 1.09002 * 109.47005 * 210.02647 * 1 2 3 30 30 H 1.08992 * 109.47357 * 330.02834 * 1 2 3 31 31 H 0.96996 * 119.99851 * 0.02562 * 5 4 3 32 32 H 1.08999 * 109.58978 * 6.60516 * 9 8 6 33 33 H 1.08997 * 109.58614 * 246.18034 * 9 8 6 34 34 H 1.09004 * 109.49455 * 294.68297 * 10 9 8 35 35 H 1.08999 * 109.49900 * 174.58679 * 10 9 8 36 36 H 1.09000 * 109.45924 * 178.61493 * 11 10 9 37 37 H 1.08996 * 109.44573 * 58.65044 * 11 10 9 38 38 H 0.97004 * 120.00317 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.55990 * 113.80178 * 22 8 6 40 40 H 1.09004 * 109.61498 * 353.38257 * 22 8 6 41 41 H 1.08004 * 126.19177 * 179.75890 * 23 4 3 42 42 H 0.96697 * 117.00026 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2898 1.1317 0.0000 4 6 3.5436 0.7407 0.0006 5 7 4.6635 1.5848 0.0002 6 6 5.9041 1.0582 0.0004 7 8 6.0541 -0.1446 -0.0949 8 7 6.9786 1.8650 0.1061 9 6 6.8203 3.3257 0.1113 10 6 7.5163 3.8927 1.3525 11 6 8.9710 3.4181 1.3784 12 6 9.0095 1.8903 1.4586 13 1 8.4832 1.5596 2.3540 14 6 10.4418 1.4256 1.5166 15 1 11.2449 2.1475 1.4991 16 6 10.7273 0.0785 1.5861 17 7 11.9774 -0.3273 1.6313 18 14 9.3383 -1.1703 1.6163 19 1 8.9993 -1.5672 0.2261 20 1 9.7661 -2.3681 2.3827 21 1 8.1454 -0.5682 2.2640 22 6 8.3302 1.2999 0.2190 23 6 3.5759 -0.6566 -0.0046 24 6 2.2704 -1.1049 0.0005 25 6 1.8288 -2.5073 -0.0001 26 8 2.6504 -3.4031 -0.0001 27 8 0.5127 -2.7995 -0.0008 28 1 -0.3633 -0.0006 -1.0276 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5133 31 1 4.5452 2.5475 -0.0001 32 1 5.7603 3.5783 0.1393 33 1 7.2745 3.7456 -0.7862 34 1 7.0035 3.5431 2.2487 35 1 7.4895 4.9819 1.3190 36 1 9.4753 3.8402 2.2477 37 1 9.4762 3.7469 0.4703 38 1 12.1783 -1.2751 1.6806 39 1 8.9074 1.5542 -0.6700 40 1 8.2666 0.2163 0.3182 41 1 4.4621 -1.2740 -0.0091 42 1 0.2710 -3.7358 -0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601013822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:37 Heat of formation + Delta-G solvation = -14.260807 kcal Electronic energy + Delta-G solvation = -27603.045304 eV Core-core repulsion = 23586.084883 eV Total energy + Delta-G solvation = -4016.960421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.71419 -40.38210 -39.79034 -37.36525 -36.53826 -35.12057 -33.58431 -32.41257 -31.79386 -30.81440 -30.45774 -26.78499 -25.30335 -25.14228 -24.53798 -22.13885 -21.61115 -20.98166 -19.92792 -19.00345 -18.79207 -18.00209 -17.45715 -16.73680 -16.46375 -16.24731 -15.52868 -15.46598 -15.01723 -14.95346 -14.24410 -14.05985 -14.03950 -13.92133 -13.53764 -13.39022 -13.01122 -12.87092 -12.62234 -12.56646 -12.24185 -12.01998 -11.45143 -11.36280 -11.09230 -10.90859 -10.87797 -10.65436 -10.43827 -10.12613 -9.85141 -9.73775 -9.28304 -9.18459 -9.12509 -8.62914 -8.48271 -8.05081 -6.10207 -4.12383 0.64374 1.77524 2.14353 2.37720 2.72737 2.82486 3.40863 3.46523 3.49182 3.59936 3.85595 4.34041 4.43516 4.57545 4.90565 4.96436 5.02777 5.16635 5.21545 5.24606 5.30658 5.38833 5.43036 5.72644 5.91262 5.96700 6.04523 6.05004 6.10392 6.34840 6.43174 6.49566 6.53375 6.65820 6.68875 6.77463 6.88993 7.12367 7.33817 7.42130 7.49170 7.71027 8.01178 8.46718 8.64187 8.92678 9.51065 11.01562 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.003762 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.383039 B = 7440.832708 C = 8949.652970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.346 5.346 3 N -0.293 5.293 4 C 0.319 3.681 5 N -0.651 5.651 6 C 0.708 3.292 7 O -0.566 6.566 8 N -0.613 5.613 9 C 0.111 3.889 10 C -0.137 4.137 11 C -0.100 4.100 12 C 0.004 3.996 13 H 0.031 0.969 14 C -0.517 4.517 15 H 0.078 0.922 16 C 0.074 3.926 17 N -0.895 5.895 18 Si 0.878 3.122 19 H -0.270 1.270 20 H -0.295 1.295 21 H -0.264 1.264 22 C 0.118 3.882 23 C -0.166 4.166 24 C 0.038 3.962 25 C 0.556 3.444 26 O -0.483 6.483 27 O -0.515 6.515 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.412 0.588 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.266 0.734 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.191 0.809 42 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.972 4.040 -4.026 25.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.134 5.134 3 N -0.127 5.127 4 C 0.064 3.936 5 N -0.306 5.306 6 C 0.409 3.591 7 O -0.442 6.442 8 N -0.349 5.349 9 C -0.012 4.012 10 C -0.175 4.175 11 C -0.138 4.138 12 C -0.016 4.016 13 H 0.049 0.951 14 C -0.555 4.555 15 H 0.096 0.904 16 C -0.129 4.129 17 N -0.532 5.532 18 Si 0.707 3.293 19 H -0.196 1.196 20 H -0.223 1.223 21 H -0.188 1.188 22 C -0.002 4.002 23 C -0.198 4.198 24 C -0.088 4.088 25 C 0.397 3.603 26 O -0.368 6.368 27 O -0.329 6.329 28 H 0.095 0.905 29 H 0.119 0.881 30 H 0.109 0.891 31 H 0.251 0.749 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.208 0.792 42 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -25.195 4.108 -4.078 25.851 hybrid contribution -0.485 -1.446 -0.031 1.526 sum -25.680 2.662 -4.109 26.143 Atomic orbital electron populations 1.22066 0.72671 1.05085 1.03862 1.48471 1.06339 1.01515 1.57090 1.77297 0.99402 1.06872 1.29141 1.18538 0.86423 0.89657 0.98960 1.42022 1.01982 1.09273 1.77332 1.15735 0.79550 0.85471 0.78317 1.90862 1.84101 1.12718 1.56489 1.47730 1.06528 1.05696 1.74973 1.21677 0.99488 0.80295 0.99731 1.22001 0.98619 0.99653 0.97244 1.21437 0.93084 0.97572 1.01696 1.19520 0.96874 0.92224 0.92981 0.95052 1.20934 0.90048 0.92916 1.51629 0.90395 1.25048 0.95366 0.98525 0.93984 1.69883 1.17836 1.15822 1.49672 0.87014 0.82277 0.80952 0.79036 1.19609 1.22259 1.18849 1.22668 0.77084 0.99394 1.01072 1.22373 0.96218 0.93566 1.07656 1.20147 0.91323 0.85602 1.11685 1.19413 0.80314 0.87496 0.73114 1.91019 1.54131 1.47047 1.44562 1.84564 1.26029 1.36061 1.86228 0.90451 0.88063 0.89082 0.74935 0.91658 0.90862 0.91882 0.91425 0.92072 0.92357 0.92451 0.91207 0.90075 0.79215 0.72126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.70 10.94 59.85 0.65 1.35 16 2 N -0.35 -4.09 4.06 -63.99 -0.26 -4.35 16 3 N -0.29 -4.05 12.56 31.34 0.39 -3.65 16 4 C 0.32 4.97 8.07 -154.46 -1.25 3.72 16 5 N -0.65 -9.72 5.37 -15.63 -0.08 -9.80 16 6 C 0.71 13.22 8.26 -86.92 -0.72 12.51 16 7 O -0.57 -12.70 12.90 5.28 0.07 -12.63 16 8 N -0.61 -10.99 2.97 -178.50 -0.53 -11.52 16 9 C 0.11 1.45 6.43 -3.71 -0.02 1.43 16 10 C -0.14 -1.88 6.08 -26.61 -0.16 -2.04 16 11 C -0.10 -1.79 5.11 -26.69 -0.14 -1.93 16 12 C 0.00 0.08 1.84 -91.66 -0.17 -0.08 16 13 H 0.03 0.76 7.21 -51.93 -0.37 0.39 16 14 C -0.52 -14.10 9.15 -34.44 -0.32 -14.42 16 15 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 16 C 0.07 2.13 5.45 -17.82 -0.10 2.03 16 17 N -0.89 -27.29 13.96 55.43 0.77 -26.52 16 18 Si 0.88 23.19 24.32 -169.99 -4.13 19.06 16 19 H -0.27 -7.20 6.91 56.52 0.39 -6.81 16 20 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 21 H -0.26 -6.95 6.54 56.52 0.37 -6.58 16 22 C 0.12 2.58 5.09 -3.71 -0.02 2.56 16 23 C -0.17 -2.76 9.41 -39.09 -0.37 -3.13 16 24 C 0.04 0.52 6.95 -82.20 -0.57 -0.05 16 25 C 0.56 6.56 8.31 34.29 0.29 6.84 16 26 O -0.48 -7.38 17.68 -19.31 -0.34 -7.72 16 27 O -0.52 -3.40 10.93 -40.81 -0.45 -3.85 16 28 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.54 6.21 -51.93 -0.32 0.22 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.41 4.77 6.28 -40.82 -0.26 4.52 16 32 H 0.07 0.64 5.57 -51.93 -0.29 0.35 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 39 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.08 2.02 2.34 -51.93 -0.12 1.89 16 41 H 0.19 3.68 5.89 -52.48 -0.31 3.37 16 42 H 0.42 0.85 9.11 45.56 0.42 1.26 16 LS Contribution 340.42 15.07 5.13 5.13 Total: -1.00 -36.50 340.42 -6.55 -43.06 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -4.24 Total: 4.01 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: -2.88 Total: 8.79 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.29 Total: -55.84 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.72 Total: -24.20 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.13 Total: 19.06 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.50 -6.55 -43.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601013822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.794 kcal (2) G-P(sol) polarization free energy of solvation -36.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds