Wall clock time and date at job start Tue Mar 31 2020 12:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40029 * 126.08361 * 2 1 4 4 C 1.31339 * 108.76508 * 179.97438 * 3 2 1 5 5 N 1.40237 * 125.67625 * 179.97438 * 4 3 2 6 6 C 1.34772 * 119.99894 * 180.02562 * 5 4 3 7 7 O 1.21593 * 119.99837 * 5.21320 * 6 5 4 8 8 N 1.34776 * 119.99976 * 185.21568 * 6 5 4 9 9 C 1.46926 * 120.63024 * 354.96198 * 8 6 5 10 10 C 1.53188 * 108.77559 * 126.39489 * 9 8 6 11 11 C 1.53044 * 109.31641 * 54.63283 * 10 9 8 12 12 C 1.53040 * 109.53639 * 298.63888 * 11 10 9 13 13 H 1.09002 * 109.49430 * 301.37729 * 12 11 10 14 14 C 1.50694 * 109.49591 * 181.31722 * 12 11 10 15 15 H 1.08000 * 120.00315 * 0.05666 * 14 12 11 16 16 C 1.37879 * 120.00103 * 180.34250 * 14 12 11 17 17 N 1.31508 * 120.00349 * 179.72377 * 16 14 12 18 18 Si 1.86807 * 119.99803 * 359.71601 * 16 14 12 19 19 H 1.48501 * 109.46874 * 90.00446 * 18 16 14 20 20 H 1.48495 * 109.47121 * 210.00257 * 18 16 14 21 21 H 1.48494 * 109.47257 * 330.00599 * 18 16 14 22 22 C 1.46934 * 120.60639 * 174.94137 * 8 6 5 23 23 C 1.39764 * 108.64388 * 0.23859 * 4 3 2 24 24 C 1.36728 * 126.08888 * 179.97438 * 2 1 3 25 25 C 1.47023 * 126.43197 * 0.06152 * 24 2 1 26 26 O 1.21553 * 120.00014 * 179.97438 * 25 24 2 27 27 O 1.34816 * 119.99986 * 359.97438 * 25 24 2 28 28 H 1.08997 * 109.46928 * 90.03168 * 1 2 3 29 29 H 1.09002 * 109.47005 * 210.02647 * 1 2 3 30 30 H 1.08992 * 109.47357 * 330.02834 * 1 2 3 31 31 H 0.96996 * 119.99851 * 0.02562 * 5 4 3 32 32 H 1.08999 * 109.58978 * 6.60516 * 9 8 6 33 33 H 1.08997 * 109.58614 * 246.18034 * 9 8 6 34 34 H 1.09004 * 109.49455 * 294.68297 * 10 9 8 35 35 H 1.08999 * 109.49900 * 174.58679 * 10 9 8 36 36 H 1.09000 * 109.45924 * 178.61493 * 11 10 9 37 37 H 1.08996 * 109.44573 * 58.65044 * 11 10 9 38 38 H 0.97004 * 120.00317 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.55990 * 113.80178 * 22 8 6 40 40 H 1.09004 * 109.61498 * 353.38257 * 22 8 6 41 41 H 1.08004 * 126.19177 * 179.75890 * 23 4 3 42 42 H 0.96697 * 117.00026 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2898 1.1317 0.0000 4 6 3.5436 0.7407 0.0006 5 7 4.6635 1.5848 0.0002 6 6 5.9041 1.0582 0.0004 7 8 6.0541 -0.1446 -0.0949 8 7 6.9786 1.8650 0.1061 9 6 6.8203 3.3257 0.1113 10 6 7.5163 3.8927 1.3525 11 6 8.9710 3.4181 1.3784 12 6 9.0095 1.8903 1.4586 13 1 8.4832 1.5596 2.3540 14 6 10.4418 1.4256 1.5166 15 1 11.2449 2.1475 1.4991 16 6 10.7273 0.0785 1.5861 17 7 11.9774 -0.3273 1.6313 18 14 9.3383 -1.1703 1.6163 19 1 8.9993 -1.5672 0.2261 20 1 9.7661 -2.3681 2.3827 21 1 8.1454 -0.5682 2.2640 22 6 8.3302 1.2999 0.2190 23 6 3.5759 -0.6566 -0.0046 24 6 2.2704 -1.1049 0.0005 25 6 1.8288 -2.5073 -0.0001 26 8 2.6504 -3.4031 -0.0001 27 8 0.5127 -2.7995 -0.0008 28 1 -0.3633 -0.0006 -1.0276 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5133 31 1 4.5452 2.5475 -0.0001 32 1 5.7603 3.5783 0.1393 33 1 7.2745 3.7456 -0.7862 34 1 7.0035 3.5431 2.2487 35 1 7.4895 4.9819 1.3190 36 1 9.4753 3.8402 2.2477 37 1 9.4762 3.7469 0.4703 38 1 12.1783 -1.2751 1.6806 39 1 8.9074 1.5542 -0.6700 40 1 8.2666 0.2163 0.3182 41 1 4.4621 -1.2740 -0.0091 42 1 0.2710 -3.7358 -0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601013822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:36 Heat of formation + Delta-G solvation = -42.513512 kcal Electronic energy + Delta-G solvation = -27604.270433 eV Core-core repulsion = 23586.084883 eV Total energy + Delta-G solvation = -4018.185550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.79518 -41.62129 -40.82462 -38.82168 -37.35582 -36.40782 -35.32855 -33.92254 -32.99991 -32.18039 -31.80658 -27.76932 -27.02030 -26.44527 -25.65193 -23.60901 -22.89750 -21.96311 -21.34996 -20.38198 -19.81349 -19.15372 -18.84372 -18.45153 -17.47803 -17.42640 -16.84659 -16.75405 -16.30291 -16.02234 -15.75650 -15.55001 -15.39269 -14.93700 -14.90519 -14.74600 -14.51934 -14.19869 -13.83858 -13.70042 -13.31883 -13.17004 -12.92467 -12.83367 -12.42699 -12.32679 -12.13121 -12.00600 -11.96353 -11.84673 -11.57858 -11.35450 -11.05775 -11.00251 -10.79383 -10.29493 -9.81788 -9.31604 -8.38217 -6.39536 -0.38020 0.72991 0.99393 1.24698 1.31904 1.39018 1.42627 1.66553 1.81341 2.11672 2.21721 2.65450 2.99830 3.44082 3.71388 3.89298 3.96307 4.10928 4.15520 4.34876 4.43881 4.44692 4.50960 4.52237 4.60373 4.71275 4.77176 4.84592 4.87770 4.99873 5.09136 5.21643 5.29366 5.37251 5.43774 5.53531 5.56098 5.62175 5.68596 5.73370 6.20605 6.28116 6.69360 6.73153 6.78317 7.25162 7.26305 8.77737 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.003762 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.383039 B = 7440.832708 C = 8949.652970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.325 5.325 3 N -0.286 5.286 4 C 0.303 3.697 5 N -0.632 5.632 6 C 0.705 3.295 7 O -0.610 6.610 8 N -0.614 5.614 9 C 0.104 3.896 10 C -0.127 4.127 11 C -0.098 4.098 12 C 0.003 3.997 13 H 0.015 0.985 14 C -0.508 4.508 15 H 0.054 0.946 16 C 0.031 3.969 17 N -0.937 5.937 18 Si 0.932 3.068 19 H -0.280 1.280 20 H -0.297 1.297 21 H -0.268 1.268 22 C 0.126 3.874 23 C -0.211 4.211 24 C 0.045 3.955 25 C 0.570 3.430 26 O -0.525 6.525 27 O -0.488 6.488 28 H 0.100 0.900 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.428 0.572 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.111 0.889 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.267 0.733 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.154 0.846 42 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.251 6.128 -4.441 30.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.113 5.113 3 N -0.121 5.121 4 C 0.050 3.950 5 N -0.288 5.288 6 C 0.406 3.594 7 O -0.489 6.489 8 N -0.350 5.350 9 C -0.017 4.017 10 C -0.165 4.165 11 C -0.136 4.136 12 C -0.017 4.017 13 H 0.033 0.967 14 C -0.547 4.547 15 H 0.072 0.928 16 C -0.167 4.167 17 N -0.577 5.577 18 Si 0.762 3.238 19 H -0.207 1.207 20 H -0.224 1.224 21 H -0.193 1.193 22 C 0.004 3.996 23 C -0.244 4.244 24 C -0.083 4.083 25 C 0.411 3.589 26 O -0.413 6.413 27 O -0.303 6.303 28 H 0.118 0.882 29 H 0.138 0.862 30 H 0.128 0.872 31 H 0.271 0.729 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.130 0.870 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.172 0.828 42 H 0.308 0.692 Dipole moment (debyes) X Y Z Total from point charges -29.574 6.266 -4.490 30.562 hybrid contribution 0.642 -2.064 0.086 2.163 sum -28.932 4.202 -4.404 29.565 Atomic orbital electron populations 1.22610 0.69368 1.07008 1.05910 1.48973 1.07851 1.00409 1.54087 1.77265 0.98560 1.07484 1.28807 1.18552 0.86962 0.89273 1.00191 1.41601 1.00693 1.09967 1.76588 1.15847 0.80598 0.84898 0.78087 1.90860 1.84952 1.14905 1.58205 1.47590 1.04780 1.07779 1.74841 1.22098 1.02291 0.76909 1.00414 1.21953 0.94994 1.02224 0.97345 1.21378 0.96687 0.93654 1.01847 1.19459 0.93593 0.95965 0.92666 0.96729 1.21316 0.92177 0.92068 1.49141 0.92784 1.25579 0.96398 1.00154 0.94603 1.69973 1.19243 1.16172 1.52310 0.86158 0.80131 0.79306 0.78172 1.20708 1.22421 1.19270 1.22127 0.79508 0.97534 1.00430 1.22098 0.96659 0.94223 1.11376 1.20190 0.90804 0.87011 1.10330 1.19117 0.81397 0.86241 0.72108 1.91017 1.55719 1.47917 1.46610 1.84494 1.22490 1.38418 1.84898 0.88208 0.86235 0.87160 0.72927 0.87702 0.88715 0.92350 0.87035 0.92444 0.91825 0.92390 0.91105 0.93356 0.82807 0.69234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 10.94 127.77 1.40 2.21 16 2 N -0.33 -6.78 4.06 -356.37 -1.45 -8.22 16 3 N -0.29 -7.21 12.56 -54.76 -0.69 -7.90 16 4 C 0.30 9.19 8.07 133.10 1.07 10.27 16 5 N -0.63 -18.02 5.37 -321.62 -1.73 -19.75 16 6 C 0.70 26.24 8.26 179.06 1.48 27.72 16 7 O -0.61 -28.55 12.90 -4.01 -0.05 -28.60 16 8 N -0.61 -21.36 2.97 -836.91 -2.49 -23.85 16 9 C 0.10 2.33 6.43 86.36 0.56 2.89 16 10 C -0.13 -3.01 6.08 30.67 0.19 -2.83 16 11 C -0.10 -3.35 5.11 30.62 0.16 -3.19 16 12 C 0.00 0.13 1.84 -11.47 -0.02 0.11 16 13 H 0.01 0.72 7.21 -2.39 -0.02 0.70 16 14 C -0.51 -28.49 9.15 25.60 0.23 -28.26 16 15 H 0.05 3.24 7.99 -2.91 -0.02 3.21 16 16 C 0.03 1.88 5.45 84.66 0.46 2.34 16 17 N -0.94 -59.16 13.96 21.45 0.30 -58.86 16 18 Si 0.93 50.64 24.32 68.60 1.67 52.31 16 19 H -0.28 -15.52 6.91 99.48 0.69 -14.83 16 20 H -0.30 -15.92 7.11 99.48 0.71 -15.21 16 21 H -0.27 -14.49 6.54 99.48 0.65 -13.84 16 22 C 0.13 5.57 5.09 86.36 0.44 6.01 16 23 C -0.21 -7.19 9.41 22.59 0.21 -6.98 16 24 C 0.05 1.19 6.95 40.64 0.28 1.47 16 25 C 0.57 12.62 8.31 70.13 0.58 13.20 16 26 O -0.53 -16.12 17.68 19.66 0.35 -15.77 16 27 O -0.49 -4.71 10.93 -57.28 -0.63 -5.34 16 28 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.12 0.70 6.21 -2.39 -0.01 0.69 16 30 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.43 8.62 6.28 -92.71 -0.58 8.04 16 32 H 0.11 1.55 5.57 -2.39 -0.01 1.53 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.11 1.78 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 39 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.05 2.47 2.34 -2.39 -0.01 2.47 16 41 H 0.15 6.45 5.89 -2.91 -0.02 6.44 16 42 H 0.44 0.11 9.11 -74.06 -0.67 -0.57 16 Total: -1.00 -85.98 340.42 2.10 -83.88 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -0.23 Total: 7.14 kcal Atomic # 6 Polarization: 17.92 SS G_CDS: 7.04 Total: 24.96 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -6.05 Total: -118.58 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -0.33 Total: -49.71 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 1.67 Total: 52.31 kcal Total: -85.98 2.10 -83.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601013822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.363 kcal (2) G-P(sol) polarization free energy of solvation -85.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds