Wall clock time and date at job start Tue Mar 31 2020 12:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40032 * 126.09134 * 2 1 4 4 C 1.31326 * 108.77154 * 180.02562 * 3 2 1 5 5 N 1.40239 * 125.67748 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99831 * 180.02562 * 5 4 3 7 7 O 1.21593 * 119.99784 * 354.77178 * 6 5 4 8 8 N 1.34775 * 119.99748 * 174.77978 * 6 5 4 9 9 C 1.46929 * 120.63202 * 4.73159 * 8 6 5 10 10 C 1.52759 * 109.00932 * 233.59044 * 9 8 6 11 11 C 1.53041 * 109.38025 * 305.58798 * 10 9 8 12 12 C 1.53036 * 109.53909 * 61.24260 * 11 10 9 13 13 H 1.09007 * 109.49771 * 58.58612 * 12 11 10 14 14 C 1.50705 * 109.50126 * 178.68042 * 12 11 10 15 15 H 1.08007 * 119.99557 * 359.83734 * 14 12 11 16 16 C 1.37869 * 120.00107 * 179.84177 * 14 12 11 17 17 N 1.31518 * 120.00490 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99833 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46857 * 89.99684 * 18 16 14 20 20 H 1.48497 * 109.47303 * 209.99338 * 18 16 14 21 21 H 1.48501 * 109.47411 * 329.99739 * 18 16 14 22 22 C 1.46925 * 120.63002 * 185.01887 * 8 6 5 23 23 C 1.39770 * 108.64460 * 359.97438 * 4 3 2 24 24 C 1.36735 * 126.08774 * 180.02562 * 2 1 3 25 25 C 1.47016 * 126.42871 * 0.24955 * 24 2 1 26 26 O 1.21550 * 120.00096 * 179.70301 * 25 24 2 27 27 O 1.34815 * 120.00365 * 359.71254 * 25 24 2 28 28 H 1.08994 * 109.47559 * 269.98363 * 1 2 3 29 29 H 1.09007 * 109.46854 * 29.98308 * 1 2 3 30 30 H 1.09006 * 109.47271 * 149.97667 * 1 2 3 31 31 H 0.96998 * 119.99791 * 359.97438 * 5 4 3 32 32 H 1.08994 * 109.58421 * 353.42893 * 9 8 6 33 33 H 1.08996 * 109.58160 * 113.84829 * 9 8 6 34 34 H 1.08998 * 109.56295 * 185.55663 * 10 9 8 35 35 H 1.08995 * 109.38716 * 65.51424 * 10 9 8 36 36 H 1.08996 * 109.46433 * 301.22026 * 11 10 9 37 37 H 1.09005 * 109.45629 * 181.26184 * 11 10 9 38 38 H 0.96996 * 119.99909 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.59051 * 246.15492 * 22 8 6 40 40 H 1.09003 * 109.58265 * 6.43833 * 22 8 6 41 41 H 1.07997 * 126.19214 * 180.02562 * 23 4 3 42 42 H 0.96692 * 117.00436 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2898 1.1316 0.0000 4 6 3.5436 0.7406 -0.0006 5 7 4.6635 1.5846 -0.0012 6 6 5.9042 1.0580 -0.0023 7 8 6.0541 -0.1448 0.0933 8 7 6.9785 1.8648 -0.1092 9 6 6.8197 3.3254 -0.1212 10 6 7.5151 3.8913 -1.3580 11 6 8.9698 3.4166 -1.3845 12 6 9.0083 1.8888 -1.4633 13 1 8.4808 1.5572 -2.3578 14 6 10.4406 1.4240 -1.5221 15 1 11.2437 2.1461 -1.5076 16 6 10.7259 0.0771 -1.5944 17 7 9.7481 -0.8023 -1.6117 18 14 12.5014 -0.4990 -1.6680 19 1 13.0078 -0.7190 -0.2894 20 1 12.5782 -1.7699 -2.4322 21 1 13.3295 0.5340 -2.3406 22 6 8.3303 1.3002 -0.2221 23 6 3.5759 -0.6567 -0.0003 24 6 2.2703 -1.1050 -0.0005 25 6 1.8287 -2.5072 -0.0063 26 8 2.6501 -3.4031 -0.0115 27 8 0.5126 -2.7995 -0.0059 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3634 -0.8898 -0.5142 31 1 4.5452 2.5474 -0.0017 32 1 5.7597 3.5774 -0.1522 33 1 7.2721 3.7494 0.7752 34 1 7.4884 4.9805 -1.3254 35 1 7.0018 3.5414 -2.2536 36 1 9.4760 3.7463 -0.4773 37 1 9.4734 3.8380 -2.2546 38 1 9.9489 -1.7499 -1.6622 39 1 8.9084 1.5557 0.6658 40 1 8.2667 0.2162 -0.3174 41 1 4.4620 -1.2741 -0.0003 42 1 0.2707 -3.7357 -0.0095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601013823.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:40 Heat of formation + Delta-G solvation = -21.906524 kcal Electronic energy + Delta-G solvation = -27393.576431 eV Core-core repulsion = 23376.284467 eV Total energy + Delta-G solvation = -4017.291964 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.54678 -40.15638 -39.56959 -37.07012 -36.42084 -34.86418 -33.48744 -32.30476 -31.57559 -30.63262 -29.76199 -26.62395 -25.12042 -24.95993 -24.35832 -21.92934 -21.45086 -20.82277 -19.85703 -18.78475 -18.60701 -17.80172 -17.27227 -16.33360 -16.22125 -16.01200 -15.32741 -15.20338 -14.81245 -14.66946 -14.30697 -13.96893 -13.82073 -13.67377 -13.38596 -13.13761 -12.75204 -12.61031 -12.49656 -12.26748 -11.97997 -11.89672 -11.29007 -11.01462 -10.91914 -10.73567 -10.72206 -10.51522 -10.42078 -10.24244 -9.92483 -9.51215 -9.13442 -9.01915 -8.98884 -8.44927 -8.27756 -7.74218 -5.98867 -4.07959 0.78352 1.94723 2.31322 2.52343 2.89133 3.04319 3.32906 3.40326 3.42127 3.75595 4.12640 4.44443 4.47671 4.70914 5.00824 5.14979 5.19195 5.27708 5.31178 5.43478 5.47006 5.57143 5.58744 5.92991 6.07791 6.10684 6.25956 6.28976 6.46661 6.59825 6.66177 6.72819 6.88878 6.91828 6.97136 7.18770 7.25044 7.48610 7.60677 7.73840 7.88766 8.03040 8.34831 8.38805 8.93563 8.98947 9.57973 11.06378 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016206 B = 0.003297 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.382440 B = 8489.301528 C =10019.381017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.349 5.349 3 N -0.297 5.297 4 C 0.321 3.679 5 N -0.654 5.654 6 C 0.706 3.294 7 O -0.557 6.557 8 N -0.611 5.611 9 C 0.111 3.889 10 C -0.134 4.134 11 C -0.111 4.111 12 C 0.039 3.961 13 H 0.030 0.970 14 C -0.522 4.522 15 H 0.059 0.941 16 C 0.063 3.937 17 N -0.879 5.879 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.128 3.872 23 C -0.162 4.162 24 C 0.036 3.964 25 C 0.556 3.444 26 O -0.483 6.483 27 O -0.516 6.516 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.409 0.591 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.264 0.736 39 H 0.044 0.956 40 H 0.125 0.875 41 H 0.193 0.807 42 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.664 4.191 3.821 20.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.137 5.137 3 N -0.131 5.131 4 C 0.067 3.933 5 N -0.310 5.310 6 C 0.407 3.593 7 O -0.432 6.432 8 N -0.347 5.347 9 C -0.013 4.013 10 C -0.173 4.173 11 C -0.148 4.148 12 C 0.020 3.980 13 H 0.048 0.952 14 C -0.561 4.561 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.516 5.516 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.200 1.200 22 C 0.008 3.992 23 C -0.194 4.194 24 C -0.090 4.090 25 C 0.397 3.603 26 O -0.367 6.367 27 O -0.330 6.330 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.248 0.752 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.143 0.857 41 H 0.210 0.790 42 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -20.033 4.197 3.871 20.831 hybrid contribution 1.090 -0.942 -0.046 1.441 sum -18.942 3.256 3.825 19.597 Atomic orbital electron populations 1.22030 0.72886 1.04960 1.03705 1.48434 1.06229 1.01562 1.57514 1.77277 0.99505 1.06860 1.29486 1.18572 0.86437 0.89749 0.98584 1.42151 1.02159 1.09098 1.77555 1.15758 0.79343 0.85612 0.78540 1.90873 1.83850 1.12487 1.55958 1.47848 1.07246 1.04970 1.74653 1.21518 0.99035 0.81433 0.99282 1.21882 0.98788 0.99140 0.97459 1.21624 0.92921 0.99564 1.00714 1.19000 0.96008 0.88968 0.94017 0.95216 1.21052 0.91331 0.91825 1.51867 0.92320 1.25053 0.97167 0.96987 0.94780 1.69871 1.30901 1.01856 1.48944 0.86591 0.85115 0.78186 0.78088 1.20623 1.21210 1.19984 1.22343 0.75289 1.03184 0.98401 1.22424 0.96188 0.93615 1.07206 1.20144 0.91381 0.85517 1.11942 1.19430 0.80245 0.87559 0.73115 1.91018 1.54101 1.47050 1.44555 1.84566 1.26158 1.35957 1.86304 0.90612 0.89210 0.88157 0.75247 0.92111 0.91490 0.92034 0.92053 0.93057 0.92906 0.92538 0.93724 0.85688 0.79026 0.72249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.79 10.95 59.84 0.66 1.45 16 2 N -0.35 -4.44 4.06 -64.00 -0.26 -4.70 16 3 N -0.30 -4.40 12.56 31.34 0.39 -4.01 16 4 C 0.32 5.36 8.07 -154.46 -1.25 4.11 16 5 N -0.65 -10.60 5.37 -15.63 -0.08 -10.68 16 6 C 0.71 14.17 8.26 -86.92 -0.72 13.45 16 7 O -0.56 -13.30 12.90 5.28 0.07 -13.24 16 8 N -0.61 -11.86 2.98 -178.77 -0.53 -12.39 16 9 C 0.11 1.63 6.40 -3.93 -0.03 1.60 16 10 C -0.13 -2.04 6.06 -26.83 -0.16 -2.21 16 11 C -0.11 -2.11 5.11 -26.69 -0.14 -2.24 16 12 C 0.04 0.94 2.25 -91.65 -0.21 0.74 16 13 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 14 C -0.52 -13.87 8.56 -34.44 -0.29 -14.17 16 15 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 16 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 17 N -0.88 -25.37 11.39 55.43 0.63 -24.74 16 18 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 C 0.13 3.01 5.39 -3.71 -0.02 2.99 16 23 C -0.16 -2.86 9.41 -39.08 -0.37 -3.23 16 24 C 0.04 0.52 6.95 -82.20 -0.57 -0.05 16 25 C 0.56 6.99 8.31 34.29 0.28 7.28 16 26 O -0.48 -7.75 17.68 -19.30 -0.34 -8.09 16 27 O -0.52 -3.78 10.92 -40.81 -0.45 -4.22 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.10 0.61 6.20 -51.93 -0.32 0.29 16 31 H 0.41 5.32 6.28 -40.82 -0.26 5.07 16 32 H 0.06 0.70 5.57 -51.93 -0.29 0.41 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.13 3.46 5.15 -51.93 -0.27 3.20 16 41 H 0.19 3.94 5.89 -52.49 -0.31 3.63 16 42 H 0.42 1.12 9.11 45.56 0.42 1.53 16 LS Contribution 347.28 15.07 5.23 5.23 Total: -1.00 -34.38 347.28 -7.64 -42.01 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -4.37 Total: 7.37 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: -2.90 Total: 11.35 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.15 Total: -56.51 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.72 Total: -25.55 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.38 -7.64 -42.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601013823.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.105 kcal (2) G-P(sol) polarization free energy of solvation -34.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds