Wall clock time and date at job start Tue Mar 31 2020 12:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39898 * 125.73937 * 2 1 4 4 C 1.30300 * 109.21459 * 180.23659 * 3 2 1 5 5 C 1.41494 * 108.16731 * 359.78451 * 4 3 2 6 6 C 1.46722 * 126.51612 * 179.97438 * 5 4 3 7 7 O 1.21595 * 120.00029 * 180.02562 * 6 5 4 8 8 O 1.34833 * 119.99824 * 0.02562 * 6 5 4 9 9 C 1.34773 * 125.74372 * 179.84777 * 2 1 3 10 10 N 1.38453 * 126.43081 * 0.03155 * 9 2 1 11 11 C 1.34775 * 120.00472 * 311.63702 * 10 9 2 12 12 O 1.21577 * 119.99774 * 5.98707 * 11 10 9 13 13 N 1.34777 * 120.00233 * 185.98779 * 11 10 9 14 14 C 1.46930 * 120.62721 * 355.42251 * 13 11 10 15 15 C 1.53189 * 108.77173 * 126.41680 * 14 13 11 16 16 C 1.53045 * 109.31408 * 54.63282 * 15 14 13 17 17 C 1.53039 * 109.53803 * 298.63445 * 16 15 14 18 18 H 1.08993 * 109.49909 * 301.41192 * 17 16 15 19 19 C 1.50700 * 109.49335 * 181.34739 * 17 16 15 20 20 H 1.07997 * 120.00752 * 0.06552 * 19 17 16 21 21 C 1.37887 * 119.99621 * 180.02562 * 19 17 16 22 22 N 1.31513 * 119.99984 * 179.97438 * 21 19 17 23 23 Si 1.86802 * 119.99930 * 0.02562 * 21 19 17 24 24 H 1.48492 * 109.47135 * 89.99930 * 23 21 19 25 25 H 1.48497 * 109.47144 * 210.00094 * 23 21 19 26 26 H 1.48501 * 109.46923 * 329.99800 * 23 21 19 27 27 C 1.46994 * 120.61579 * 175.44918 * 13 11 10 28 28 H 1.09003 * 109.46971 * 266.72681 * 1 2 3 29 29 H 1.09002 * 109.47014 * 26.72651 * 1 2 3 30 30 H 1.09002 * 109.47058 * 146.73391 * 1 2 3 31 31 H 1.08000 * 125.91687 * 179.75500 * 4 3 2 32 32 H 0.96701 * 116.99591 * 180.02562 * 8 6 5 33 33 H 0.97008 * 119.99544 * 131.63384 * 10 9 2 34 34 H 1.08997 * 109.59011 * 6.62907 * 14 13 11 35 35 H 1.09000 * 109.58508 * 246.20049 * 14 13 11 36 36 H 1.09001 * 109.49972 * 294.68222 * 15 14 13 37 37 H 1.09000 * 109.49490 * 174.58178 * 15 14 13 38 38 H 1.09004 * 109.45845 * 178.60805 * 16 15 14 39 39 H 1.09007 * 109.44727 * 58.64925 * 16 15 14 40 40 H 0.96996 * 120.00115 * 179.97438 * 22 21 19 41 41 H 1.08999 * 109.58074 * 113.80288 * 27 13 11 42 42 H 1.09007 * 109.62784 * 353.35550 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2821 1.1355 0.0000 4 6 3.5313 0.7649 -0.0051 5 6 3.5719 -0.6494 -0.0036 6 6 4.7756 -1.4883 -0.0084 7 8 4.6723 -2.6999 -0.0069 8 8 5.9963 -0.9158 -0.0145 9 6 2.2523 -1.0939 0.0029 10 7 1.8285 -2.4119 0.0058 11 6 0.8835 -2.8141 0.8786 12 8 0.3255 -1.9998 1.5882 13 7 0.5573 -4.1190 0.9647 14 6 1.1494 -5.1008 0.0459 15 6 1.7795 -6.2288 0.8691 16 6 0.7293 -6.8099 1.8186 17 6 0.2497 -5.7201 2.7801 18 1 1.0991 -5.3302 3.3409 19 6 -0.7599 -6.3016 3.7360 20 1 -1.0318 -7.3444 3.6659 21 6 -1.3358 -5.5023 4.7007 22 7 -2.2173 -6.0095 5.5346 23 14 -0.8652 -3.6986 4.8222 24 1 -1.7715 -2.8918 3.9663 25 1 -0.9861 -3.2494 6.2325 26 1 0.5364 -3.5209 4.3646 27 6 -0.3982 -4.5863 1.9793 28 1 -0.3633 -0.0587 1.0260 29 1 -0.3633 0.9179 -0.4622 30 1 -0.3633 -0.8593 -0.5637 31 1 4.3874 1.4233 -0.0101 32 1 6.7596 -1.5095 -0.0179 33 1 2.2117 -3.0459 -0.6205 34 1 1.9163 -4.6183 -0.5599 35 1 0.3735 -5.5101 -0.6010 36 1 2.6145 -5.8341 1.4478 37 1 2.1375 -7.0111 0.1999 38 1 1.1683 -7.6292 2.3880 39 1 -0.1166 -7.1820 1.2404 40 1 -2.6222 -5.4473 6.2134 41 1 -1.3002 -4.9537 1.4899 42 1 -0.6521 -3.7647 2.6491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601023051.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:38 Heat of formation + Delta-G solvation = -24.904972 kcal Electronic energy + Delta-G solvation = -28504.511594 eV Core-core repulsion = 24487.089607 eV Total energy + Delta-G solvation = -4017.421987 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.95668 -40.20032 -39.65178 -37.43524 -36.09608 -35.06724 -33.66740 -33.18385 -32.05266 -30.66630 -29.63706 -27.40156 -25.36846 -25.14072 -23.64533 -22.22202 -21.86316 -21.01115 -19.93458 -19.21494 -18.42464 -18.07786 -17.68017 -16.77812 -16.58231 -16.17831 -15.47797 -15.32656 -15.07005 -14.71757 -14.31057 -14.12410 -14.05856 -13.85126 -13.45215 -13.16103 -12.99965 -12.84336 -12.78378 -12.47962 -12.29835 -11.61313 -11.54254 -11.43281 -11.15573 -10.71126 -10.67771 -10.55284 -10.48517 -10.22616 -10.07259 -9.80447 -9.39965 -9.32073 -9.18506 -8.75965 -8.65107 -8.21611 -6.16165 -4.17916 1.10120 1.84903 1.92728 2.53091 2.99319 3.03670 3.25249 3.31893 3.40304 3.51388 3.76012 4.35334 4.36349 4.79217 4.86354 4.96902 5.15344 5.17277 5.22890 5.25636 5.34370 5.54964 5.64422 5.65233 5.74347 5.91257 6.00223 6.03537 6.21441 6.32061 6.35135 6.40913 6.45398 6.60333 6.67463 6.74137 6.87945 7.08730 7.33460 7.37351 7.64963 7.80879 7.89715 8.38708 8.46747 8.87329 9.45043 10.95763 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015031 B = 0.004553 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.350880 B = 6148.533496 C = 6999.336371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.345 5.345 3 N -0.290 5.290 4 C 0.116 3.884 5 C -0.314 4.314 6 C 0.565 3.435 7 O -0.530 6.530 8 O -0.514 6.514 9 C 0.422 3.578 10 N -0.664 5.664 11 C 0.701 3.299 12 O -0.576 6.576 13 N -0.609 5.609 14 C 0.111 3.889 15 C -0.136 4.136 16 C -0.100 4.100 17 C 0.003 3.997 18 H 0.031 0.969 19 C -0.516 4.516 20 H 0.079 0.921 21 C 0.074 3.926 22 N -0.894 5.894 23 Si 0.879 3.121 24 H -0.273 1.273 25 H -0.295 1.295 26 H -0.265 1.265 27 C 0.118 3.882 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.200 0.800 32 H 0.412 0.588 33 H 0.424 0.576 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.266 0.734 41 H 0.071 0.929 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.781 9.342 -16.485 22.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.126 5.126 3 N -0.110 5.110 4 C -0.073 4.073 5 C -0.330 4.330 6 C 0.411 3.589 7 O -0.420 6.420 8 O -0.325 6.325 9 C 0.191 3.809 10 N -0.322 5.322 11 C 0.403 3.597 12 O -0.453 6.453 13 N -0.344 5.344 14 C -0.012 4.012 15 C -0.174 4.174 16 C -0.138 4.138 17 C -0.016 4.016 18 H 0.049 0.951 19 C -0.554 4.554 20 H 0.097 0.903 21 C -0.129 4.129 22 N -0.531 5.531 23 Si 0.709 3.291 24 H -0.199 1.199 25 H -0.222 1.222 26 H -0.190 1.190 27 C -0.002 4.002 28 H 0.119 0.881 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.217 0.783 32 H 0.270 0.730 33 H 0.267 0.733 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.831 10.800 -15.771 21.495 hybrid contribution 1.365 -0.440 -0.092 1.437 sum 11.196 10.360 -15.863 22.008 Atomic orbital electron populations 1.22152 0.72445 1.03428 1.05634 1.48692 1.07734 1.02439 1.53780 1.77236 1.01858 1.05937 1.25945 1.23957 0.95297 0.92922 0.95082 1.18608 0.88895 0.93862 1.31638 1.19358 0.82390 0.85439 0.71705 1.90897 1.87426 1.15356 1.48337 1.84539 1.16350 1.45215 1.86437 1.17530 0.88457 0.81033 0.93861 1.42210 1.43379 1.06699 1.39895 1.15961 0.79437 0.83891 0.80399 1.90929 1.55890 1.51803 1.46665 1.47779 1.46513 1.03702 1.36371 1.21706 0.97118 0.90587 0.91783 1.21980 0.99508 0.97024 0.98920 1.21440 0.96878 0.98737 0.96698 1.19521 0.96937 0.91661 0.93525 0.95053 1.20945 1.23100 0.98248 1.13140 0.90308 1.25043 0.94357 0.98361 0.95130 1.69881 1.27866 1.36451 1.18913 0.86998 0.80417 0.85318 0.76412 1.19904 1.22225 1.18985 1.22705 0.90344 0.98736 0.88459 0.88055 0.89235 0.90038 0.78290 0.72977 0.73279 0.91469 0.90857 0.91652 0.91341 0.92002 0.92386 0.92436 0.91108 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.31 9.49 59.85 0.57 1.88 16 2 N -0.35 -4.95 3.91 -66.73 -0.26 -5.21 16 3 N -0.29 -3.94 12.47 30.88 0.39 -3.55 16 4 C 0.12 1.35 11.86 -16.96 -0.20 1.15 16 5 C -0.31 -4.20 6.15 -104.86 -0.64 -4.85 16 6 C 0.57 7.11 8.31 34.16 0.28 7.40 16 7 O -0.53 -7.87 16.74 -19.34 -0.32 -8.19 16 8 O -0.51 -4.53 13.28 -40.85 -0.54 -5.07 16 9 C 0.42 6.24 6.97 -153.45 -1.07 5.17 16 10 N -0.66 -9.75 4.68 -15.46 -0.07 -9.83 16 11 C 0.70 12.63 7.64 -86.92 -0.66 11.97 16 12 O -0.58 -12.13 12.33 5.30 0.07 -12.06 16 13 N -0.61 -10.79 2.97 -178.45 -0.53 -11.32 16 14 C 0.11 1.50 6.43 -3.71 -0.02 1.47 16 15 C -0.14 -1.97 6.08 -26.61 -0.16 -2.14 16 16 C -0.10 -1.81 5.11 -26.69 -0.14 -1.95 16 17 C 0.00 0.07 1.84 -91.65 -0.17 -0.09 16 18 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 19 C -0.52 -14.01 9.14 -34.44 -0.31 -14.32 16 20 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 21 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 22 N -0.89 -27.00 13.96 55.43 0.77 -26.22 16 23 Si 0.88 22.94 24.32 -169.99 -4.13 18.81 16 24 H -0.27 -7.07 6.92 56.52 0.39 -6.68 16 25 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 26 H -0.26 -7.03 6.53 56.52 0.37 -6.66 16 27 C 0.12 2.53 5.10 -3.68 -0.02 2.51 16 28 H 0.10 1.51 6.72 -51.93 -0.35 1.16 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 0.97 7.69 -51.93 -0.40 0.57 16 31 H 0.20 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.41 1.81 9.11 45.56 0.42 2.23 16 33 H 0.42 5.30 5.81 -40.82 -0.24 5.06 16 34 H 0.07 0.74 5.57 -51.93 -0.29 0.46 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 40 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.08 1.95 2.36 -51.93 -0.12 1.82 16 LS Contribution 340.58 15.07 5.13 5.13 Total: -1.00 -35.32 340.58 -6.49 -41.81 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -4.33 Total: 5.48 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: -2.65 Total: 10.21 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.29 Total: -56.13 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.80 Total: -25.32 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.13 Total: 18.81 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.32 -6.49 -41.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601023051.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.908 kcal (2) G-P(sol) polarization free energy of solvation -35.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds