Wall clock time and date at job start Tue Mar 31 2020 12:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39898 * 125.73937 * 2 1 4 4 C 1.30300 * 109.21459 * 180.23659 * 3 2 1 5 5 C 1.41494 * 108.16731 * 359.78451 * 4 3 2 6 6 C 1.46722 * 126.51612 * 179.97438 * 5 4 3 7 7 O 1.21595 * 120.00029 * 180.02562 * 6 5 4 8 8 O 1.34833 * 119.99824 * 0.02562 * 6 5 4 9 9 C 1.34773 * 125.74372 * 179.84777 * 2 1 3 10 10 N 1.38453 * 126.43081 * 0.03155 * 9 2 1 11 11 C 1.34775 * 120.00472 * 311.63702 * 10 9 2 12 12 O 1.21577 * 119.99774 * 5.98707 * 11 10 9 13 13 N 1.34777 * 120.00233 * 185.98779 * 11 10 9 14 14 C 1.46930 * 120.62721 * 355.42251 * 13 11 10 15 15 C 1.53189 * 108.77173 * 126.41680 * 14 13 11 16 16 C 1.53045 * 109.31408 * 54.63282 * 15 14 13 17 17 C 1.53039 * 109.53803 * 298.63445 * 16 15 14 18 18 H 1.08993 * 109.49909 * 301.41192 * 17 16 15 19 19 C 1.50700 * 109.49335 * 181.34739 * 17 16 15 20 20 H 1.07997 * 120.00752 * 0.06552 * 19 17 16 21 21 C 1.37887 * 119.99621 * 180.02562 * 19 17 16 22 22 N 1.31513 * 119.99984 * 179.97438 * 21 19 17 23 23 Si 1.86802 * 119.99930 * 0.02562 * 21 19 17 24 24 H 1.48492 * 109.47135 * 89.99930 * 23 21 19 25 25 H 1.48497 * 109.47144 * 210.00094 * 23 21 19 26 26 H 1.48501 * 109.46923 * 329.99800 * 23 21 19 27 27 C 1.46994 * 120.61579 * 175.44918 * 13 11 10 28 28 H 1.09003 * 109.46971 * 266.72681 * 1 2 3 29 29 H 1.09002 * 109.47014 * 26.72651 * 1 2 3 30 30 H 1.09002 * 109.47058 * 146.73391 * 1 2 3 31 31 H 1.08000 * 125.91687 * 179.75500 * 4 3 2 32 32 H 0.96701 * 116.99591 * 180.02562 * 8 6 5 33 33 H 0.97008 * 119.99544 * 131.63384 * 10 9 2 34 34 H 1.08997 * 109.59011 * 6.62907 * 14 13 11 35 35 H 1.09000 * 109.58508 * 246.20049 * 14 13 11 36 36 H 1.09001 * 109.49972 * 294.68222 * 15 14 13 37 37 H 1.09000 * 109.49490 * 174.58178 * 15 14 13 38 38 H 1.09004 * 109.45845 * 178.60805 * 16 15 14 39 39 H 1.09007 * 109.44727 * 58.64925 * 16 15 14 40 40 H 0.96996 * 120.00115 * 179.97438 * 22 21 19 41 41 H 1.08999 * 109.58074 * 113.80288 * 27 13 11 42 42 H 1.09007 * 109.62784 * 353.35550 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2821 1.1355 0.0000 4 6 3.5313 0.7649 -0.0051 5 6 3.5719 -0.6494 -0.0036 6 6 4.7756 -1.4883 -0.0084 7 8 4.6723 -2.6999 -0.0069 8 8 5.9963 -0.9158 -0.0145 9 6 2.2523 -1.0939 0.0029 10 7 1.8285 -2.4119 0.0058 11 6 0.8835 -2.8141 0.8786 12 8 0.3255 -1.9998 1.5882 13 7 0.5573 -4.1190 0.9647 14 6 1.1494 -5.1008 0.0459 15 6 1.7795 -6.2288 0.8691 16 6 0.7293 -6.8099 1.8186 17 6 0.2497 -5.7201 2.7801 18 1 1.0991 -5.3302 3.3409 19 6 -0.7599 -6.3016 3.7360 20 1 -1.0318 -7.3444 3.6659 21 6 -1.3358 -5.5023 4.7007 22 7 -2.2173 -6.0095 5.5346 23 14 -0.8652 -3.6986 4.8222 24 1 -1.7715 -2.8918 3.9663 25 1 -0.9861 -3.2494 6.2325 26 1 0.5364 -3.5209 4.3646 27 6 -0.3982 -4.5863 1.9793 28 1 -0.3633 -0.0587 1.0260 29 1 -0.3633 0.9179 -0.4622 30 1 -0.3633 -0.8593 -0.5637 31 1 4.3874 1.4233 -0.0101 32 1 6.7596 -1.5095 -0.0179 33 1 2.2117 -3.0459 -0.6205 34 1 1.9163 -4.6183 -0.5599 35 1 0.3735 -5.5101 -0.6010 36 1 2.6145 -5.8341 1.4478 37 1 2.1375 -7.0111 0.1999 38 1 1.1683 -7.6292 2.3880 39 1 -0.1166 -7.1820 1.2404 40 1 -2.6222 -5.4473 6.2134 41 1 -1.3002 -4.9537 1.4899 42 1 -0.6521 -3.7647 2.6491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601023051.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:37 Heat of formation + Delta-G solvation = -51.178068 kcal Electronic energy + Delta-G solvation = -28505.650881 eV Core-core repulsion = 24487.089607 eV Total energy + Delta-G solvation = -4018.561274 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.02545 -41.48928 -40.57294 -38.88376 -36.99410 -36.32330 -35.31334 -34.40862 -33.62861 -32.29541 -30.74650 -28.40234 -27.09246 -26.63124 -24.64331 -23.67929 -23.09138 -22.10643 -21.19438 -20.65885 -19.58023 -19.19176 -18.90229 -18.65318 -17.60538 -17.36497 -16.85519 -16.62953 -16.15022 -16.05841 -15.77761 -15.51892 -15.41829 -15.02106 -14.86664 -14.61955 -14.34973 -14.16287 -13.87368 -13.75839 -13.53293 -13.21181 -12.98512 -12.57889 -12.45400 -12.37904 -12.18573 -11.99438 -11.83578 -11.64836 -11.51534 -11.46078 -11.12874 -11.06070 -10.83477 -10.43544 -9.87788 -9.58513 -8.41011 -6.42701 0.03007 0.82041 0.98457 1.20026 1.25671 1.31340 1.37465 1.78344 2.10166 2.17945 2.29977 2.54618 2.96070 3.43598 3.79170 3.83881 3.98411 4.00195 4.07589 4.21076 4.34090 4.38322 4.43612 4.51460 4.60012 4.62036 4.64747 4.78734 4.79907 4.92628 5.01151 5.16772 5.30002 5.32670 5.44798 5.51987 5.62191 5.64525 5.66872 5.70971 6.24255 6.32182 6.56481 6.67008 7.08284 7.11056 7.22797 8.75036 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015031 B = 0.004553 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.350880 B = 6148.533496 C = 6999.336371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.354 5.354 3 N -0.306 5.306 4 C 0.128 3.872 5 C -0.319 4.319 6 C 0.570 3.430 7 O -0.556 6.556 8 O -0.500 6.500 9 C 0.396 3.604 10 N -0.647 5.647 11 C 0.699 3.301 12 O -0.611 6.611 13 N -0.612 5.612 14 C 0.106 3.894 15 C -0.127 4.127 16 C -0.096 4.096 17 C 0.002 3.998 18 H 0.009 0.991 19 C -0.509 4.509 20 H 0.054 0.946 21 C 0.032 3.968 22 N -0.935 5.935 23 Si 0.936 3.064 24 H -0.273 1.273 25 H -0.297 1.297 26 H -0.275 1.275 27 C 0.128 3.872 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.238 0.762 32 H 0.433 0.567 33 H 0.434 0.566 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.050 0.950 37 H 0.110 0.890 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.267 0.733 41 H 0.077 0.923 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.013 10.177 -19.090 25.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.135 5.135 3 N -0.126 5.126 4 C -0.060 4.060 5 C -0.335 4.335 6 C 0.417 3.583 7 O -0.449 6.449 8 O -0.313 6.313 9 C 0.166 3.834 10 N -0.306 5.306 11 C 0.401 3.599 12 O -0.490 6.490 13 N -0.346 5.346 14 C -0.015 4.015 15 C -0.165 4.165 16 C -0.134 4.134 17 C -0.018 4.018 18 H 0.027 0.973 19 C -0.548 4.548 20 H 0.072 0.928 21 C -0.167 4.167 22 N -0.575 5.575 23 Si 0.766 3.234 24 H -0.200 1.200 25 H -0.225 1.225 26 H -0.201 1.201 27 C 0.005 3.995 28 H 0.093 0.907 29 H 0.133 0.867 30 H 0.103 0.897 31 H 0.254 0.746 32 H 0.295 0.705 33 H 0.280 0.720 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.069 0.931 37 H 0.128 0.872 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.128 11.636 -18.428 24.941 hybrid contribution 0.795 -0.708 0.678 1.263 sum 12.923 10.927 -17.749 24.524 Atomic orbital electron populations 1.22135 0.72094 1.04969 1.04246 1.48860 1.08202 1.02581 1.53825 1.77230 1.02669 1.05975 1.26767 1.24579 0.95646 0.92667 0.93101 1.18894 0.88796 0.94806 1.31053 1.19247 0.83149 0.84846 0.71107 1.90883 1.87983 1.16379 1.49647 1.84486 1.15940 1.45360 1.85520 1.17855 0.89340 0.81001 0.95221 1.41874 1.42307 1.07144 1.39275 1.16042 0.79685 0.83616 0.80517 1.90916 1.57159 1.52800 1.48163 1.47637 1.46215 1.04540 1.36225 1.22061 0.98599 0.89593 0.91256 1.21925 0.97632 0.98298 0.98671 1.21372 0.98399 0.97066 0.96570 1.19452 0.94851 0.93582 0.93883 0.97309 1.21290 1.22840 0.97155 1.13514 0.92783 1.25588 0.94684 1.01082 0.95382 1.69974 1.29691 1.37668 1.20213 0.86100 0.79353 0.82172 0.75773 1.19985 1.22452 1.20079 1.22159 0.91237 0.97007 0.89054 0.90725 0.86669 0.89667 0.74569 0.70498 0.72040 0.88529 0.88132 0.93072 0.87219 0.92578 0.91437 0.92326 0.90524 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.62 9.49 127.77 1.21 3.83 16 2 N -0.35 -9.74 3.91 -365.02 -1.43 -11.17 16 3 N -0.31 -7.75 12.47 -56.21 -0.70 -8.45 16 4 C 0.13 2.62 11.86 85.72 1.02 3.64 16 5 C -0.32 -7.81 6.15 -20.02 -0.12 -7.93 16 6 C 0.57 12.78 8.31 70.04 0.58 13.36 16 7 O -0.56 -15.15 16.74 19.53 0.33 -14.82 16 8 O -0.50 -7.02 13.28 -57.46 -0.76 -7.78 16 9 C 0.40 11.11 6.97 132.55 0.92 12.03 16 10 N -0.65 -17.94 4.68 -321.10 -1.50 -19.44 16 11 C 0.70 24.54 7.64 179.05 1.37 25.91 16 12 O -0.61 -25.84 12.33 -3.96 -0.05 -25.88 16 13 N -0.61 -20.76 2.97 -836.74 -2.49 -23.24 16 14 C 0.11 2.50 6.43 86.36 0.56 3.05 16 15 C -0.13 -3.28 6.08 30.67 0.19 -3.10 16 16 C -0.10 -3.35 5.11 30.62 0.16 -3.19 16 17 C 0.00 0.09 1.84 -11.46 -0.02 0.07 16 18 H 0.01 0.44 7.20 -2.39 -0.02 0.42 16 19 C -0.51 -28.25 9.14 25.60 0.23 -28.01 16 20 H 0.05 3.21 7.99 -2.91 -0.02 3.19 16 21 C 0.03 1.85 5.45 84.66 0.46 2.31 16 22 N -0.94 -58.07 13.96 21.45 0.30 -57.77 16 23 Si 0.94 49.39 24.32 68.60 1.67 51.06 16 24 H -0.27 -14.30 6.92 99.48 0.69 -13.61 16 25 H -0.30 -15.52 7.11 99.48 0.71 -14.82 16 26 H -0.28 -14.79 6.53 99.48 0.65 -14.14 16 27 C 0.13 5.43 5.10 86.35 0.44 5.87 16 28 H 0.07 2.27 6.72 -2.39 -0.02 2.26 16 29 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.08 1.98 7.69 -2.39 -0.02 1.97 16 31 H 0.24 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.43 2.22 9.11 -74.06 -0.67 1.54 16 33 H 0.43 9.74 5.81 -92.70 -0.54 9.20 16 34 H 0.10 1.74 5.57 -2.39 -0.01 1.73 16 35 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 41 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 42 H 0.05 2.49 2.36 -2.38 -0.01 2.49 16 Total: -1.00 -79.25 340.58 2.16 -77.08 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -0.19 Total: 12.59 kcal Atomic # 6 Polarization: 20.85 SS G_CDS: 6.99 Total: 27.84 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -5.82 Total: -120.08 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -0.48 Total: -48.49 kcal Atomic # 14 Polarization: 49.39 SS G_CDS: 1.67 Total: 51.06 kcal Total: -79.25 2.16 -77.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601023051.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.903 kcal (2) G-P(sol) polarization free energy of solvation -79.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds