Wall clock time and date at job start Tue Mar 31 2020 13:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00119 * 2 1 4 4 H 1.48499 * 109.47009 * 270.00264 * 3 2 1 5 5 H 1.48501 * 109.47180 * 29.99926 * 3 2 1 6 6 H 1.48495 * 109.47365 * 150.00088 * 3 2 1 7 7 C 1.37876 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00597 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99654 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.46817 * 180.02562 * 9 7 2 11 11 C 1.46959 * 110.99957 * 293.79697 * 10 9 7 12 12 C 1.53054 * 109.36489 * 176.81054 * 11 10 9 13 13 N 1.46963 * 109.35911 * 58.40547 * 12 11 10 14 14 C 1.46901 * 110.99616 * 176.81202 * 13 12 11 15 15 H 1.08999 * 109.46971 * 181.07983 * 14 13 12 16 16 C 1.50700 * 109.47488 * 61.08009 * 14 13 12 17 17 O 1.20828 * 119.99453 * 359.97438 * 16 14 13 18 18 O 1.34225 * 120.00257 * 180.02562 * 16 14 13 19 19 C 1.50700 * 109.47147 * 301.07718 * 14 13 12 20 20 C 1.38249 * 119.97359 * 94.58076 * 19 14 13 21 21 C 1.38193 * 120.02638 * 179.72526 * 20 19 14 22 22 C 1.38464 * 119.97445 * 0.57160 * 21 20 19 23 23 F 1.35102 * 120.02758 * 179.67678 * 22 21 20 24 24 C 1.38463 * 119.94478 * 359.70715 * 22 21 20 25 25 C 1.38189 * 119.97569 * 359.97438 * 24 22 21 26 26 C 1.46959 * 110.87948 * 300.67586 * 13 12 11 27 27 C 1.46957 * 111.00112 * 170.00288 * 10 9 7 28 28 H 0.97001 * 119.99294 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47170 * 59.99873 * 9 7 2 30 30 H 1.08992 * 109.47320 * 299.99727 * 9 7 2 31 31 H 1.09004 * 109.48810 * 296.78124 * 11 10 9 32 32 H 1.09001 * 109.49097 * 56.84634 * 11 10 9 33 33 H 1.08991 * 109.49342 * 298.43942 * 12 11 10 34 34 H 1.08997 * 109.50713 * 178.37443 * 12 11 10 35 35 H 0.96696 * 117.00097 * 179.97438 * 18 16 14 36 36 H 1.08003 * 119.98694 * 359.97438 * 20 19 14 37 37 H 1.07996 * 120.01674 * 180.25474 * 21 20 19 38 38 H 1.08006 * 120.00785 * 179.97438 * 24 22 21 39 39 H 1.08008 * 119.98638 * 180.02562 * 25 24 22 40 40 H 1.09004 * 109.48810 * 299.35686 * 26 13 12 41 41 H 1.09001 * 109.50498 * 179.30125 * 26 13 12 42 42 H 1.09006 * 109.48640 * 303.15272 * 27 10 9 43 43 H 1.08996 * 109.49379 * 63.19361 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5790 0.0001 11 6 3.6553 -3.2598 1.2557 12 6 4.1115 -4.7190 1.1842 13 7 5.5608 -4.7652 0.9454 14 6 6.0505 -6.1502 0.9456 15 1 7.1287 -6.1544 0.7858 16 6 5.3760 -6.9216 -0.1594 17 8 4.5697 -6.3739 -0.8735 18 8 5.6701 -8.2174 -0.3497 19 6 5.7366 -6.7938 2.2716 20 6 4.5833 -7.5414 2.4207 21 6 4.2973 -8.1368 3.6345 22 6 5.1604 -7.9746 4.7050 23 9 4.8785 -8.5508 5.8941 24 6 6.3123 -7.2209 4.5561 25 6 6.5995 -6.6319 3.3394 26 6 5.9068 -4.0844 -0.3102 27 6 5.4505 -2.6253 -0.2387 28 1 -0.4849 0.8401 0.0004 29 1 3.8752 -0.6796 0.8894 30 1 3.8746 -0.6809 -0.8905 31 1 4.1541 -2.7632 2.0880 32 1 2.5760 -3.2231 1.4039 33 1 3.5924 -5.2228 0.3689 34 1 3.8820 -5.2186 2.1254 35 1 5.2117 -8.6703 -1.0707 36 1 3.9075 -7.6634 1.5871 37 1 3.3983 -8.7241 3.7497 38 1 6.9860 -7.0934 5.3906 39 1 7.4982 -6.0443 3.2230 40 1 5.4080 -4.5811 -1.1425 41 1 6.9860 -4.1211 -0.4587 42 1 5.6801 -2.1260 -1.1800 43 1 5.9697 -2.1212 0.5764 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067698.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:55 Heat of formation + Delta-G solvation = -77.059325 kcal Electronic energy + Delta-G solvation = -27825.512566 eV Core-core repulsion = 23785.909036 eV Total energy + Delta-G solvation = -4039.603531 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.11686 -41.32082 -39.16127 -38.39880 -36.34205 -35.17923 -32.67246 -31.55616 -31.47426 -30.45332 -28.70997 -26.87288 -24.47393 -23.66988 -23.19706 -22.49814 -21.20190 -20.72012 -19.39765 -18.29648 -17.97617 -17.04855 -16.87497 -16.56956 -16.22132 -15.80813 -15.73663 -15.32974 -14.63837 -14.46479 -14.31666 -13.90410 -13.83753 -13.77444 -13.65481 -13.54054 -13.21183 -12.62117 -12.47252 -12.17718 -12.02364 -11.85140 -11.73649 -11.48322 -11.32393 -11.00315 -10.93010 -10.63201 -10.52871 -10.40474 -10.08613 -9.81551 -9.36319 -9.24529 -8.91362 -8.54577 -8.30391 -7.31007 -6.02853 -3.99945 0.79476 0.96339 1.94575 2.80546 3.21179 3.30109 3.37383 3.39668 3.89874 3.98462 4.25303 4.43489 4.44118 4.60925 4.78070 4.82568 4.93741 4.99174 5.17084 5.23299 5.29347 5.52646 5.58195 5.60032 5.67220 5.78127 5.83971 5.92039 5.92892 5.98087 6.10944 6.16003 6.28157 6.35756 6.56841 6.58329 6.65438 6.83532 6.89023 6.96479 7.10894 7.62312 7.70602 7.94362 8.08282 8.68926 9.05902 9.59035 11.10323 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015286 B = 0.003420 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.316748 B = 8185.320354 C = 8988.044775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.508 4.508 8 H 0.080 0.920 9 C 0.163 3.837 10 N -0.526 5.526 11 C 0.072 3.928 12 C 0.035 3.965 13 N -0.499 5.499 14 C 0.136 3.864 15 H 0.127 0.873 16 C 0.444 3.556 17 O -0.489 6.489 18 O -0.518 6.518 19 C -0.080 4.080 20 C -0.075 4.075 21 C -0.150 4.150 22 C 0.102 3.898 23 F -0.140 7.140 24 C -0.153 4.153 25 C -0.059 4.059 26 C 0.041 3.959 27 C 0.058 3.942 28 H 0.263 0.737 29 H -0.011 1.011 30 H 0.024 0.976 31 H 0.027 0.973 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.405 0.595 36 H 0.125 0.875 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.260 -18.143 5.437 24.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.546 4.546 8 H 0.098 0.902 9 C 0.037 3.963 10 N -0.251 5.251 11 C -0.057 4.057 12 C -0.092 4.092 13 N -0.223 5.223 14 C 0.025 3.975 15 H 0.145 0.855 16 C 0.284 3.716 17 O -0.375 6.375 18 O -0.329 6.329 19 C -0.081 4.081 20 C -0.094 4.094 21 C -0.169 4.169 22 C 0.083 3.917 23 F -0.119 7.119 24 C -0.172 4.172 25 C -0.078 4.078 26 C -0.087 4.087 27 C -0.071 4.071 28 H 0.073 0.927 29 H 0.007 0.993 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.264 0.736 36 H 0.143 0.857 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 16.056 -17.650 5.587 24.506 hybrid contribution -0.045 0.605 -0.321 0.686 sum 16.011 -17.045 5.267 23.971 Atomic orbital electron populations 1.69901 1.06121 1.26777 1.51208 1.24897 0.94726 0.98822 0.94879 0.86862 0.80311 0.84040 0.78546 1.20191 1.21236 1.19273 1.21037 0.88746 0.94701 1.50154 0.90177 1.20153 0.97076 0.84077 0.95042 1.62084 1.10231 1.18963 1.33794 1.21971 1.01837 0.91292 0.90562 1.22665 0.85897 0.99162 1.01525 1.62854 1.16749 1.08055 1.34650 1.20576 1.01177 0.87680 0.88081 0.85504 1.25174 0.80593 0.80547 0.85324 1.90783 1.32056 1.68811 1.45889 1.84622 1.67075 1.25652 1.55558 1.19260 0.95792 0.98774 0.94261 1.20886 0.95857 0.95587 0.97065 1.21065 1.00558 1.02871 0.92364 1.17748 0.95870 0.96724 0.81381 1.91507 1.93583 1.82600 1.44183 1.21129 0.97120 0.99661 0.99264 1.20782 0.99229 0.96881 0.90874 1.22502 0.99590 0.95636 0.90932 1.22055 0.90337 0.94219 1.00478 0.92709 0.99342 0.95838 0.95455 0.88934 0.90887 0.91030 0.73642 0.85669 0.84497 0.84426 0.84335 0.91049 0.91205 0.90816 0.95196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.51 -14.63 9.03 -34.44 -0.31 -14.94 16 8 H 0.08 2.52 7.37 -52.49 -0.39 2.13 16 9 C 0.16 4.02 3.79 -4.97 -0.02 4.00 16 10 N -0.53 -11.32 4.70 -235.91 -1.11 -12.43 16 11 C 0.07 1.43 5.43 -3.76 -0.02 1.41 16 12 C 0.03 0.56 4.75 -3.76 -0.02 0.54 16 13 N -0.50 -6.84 4.71 -229.27 -1.08 -7.92 16 14 C 0.14 1.45 2.57 -70.02 -0.18 1.27 16 15 H 0.13 1.06 8.11 -51.93 -0.42 0.63 16 16 C 0.44 5.06 5.36 36.01 0.19 5.25 16 17 O -0.49 -7.38 12.33 -18.75 -0.23 -7.61 16 18 O -0.52 -4.40 13.12 -39.24 -0.51 -4.92 16 19 C -0.08 -0.81 4.27 -104.62 -0.45 -1.25 16 20 C -0.08 -0.77 7.44 -39.59 -0.29 -1.07 16 21 C -0.15 -1.46 10.03 -39.51 -0.40 -1.86 16 22 C 0.10 1.03 7.30 -39.42 -0.29 0.74 16 23 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 24 C -0.15 -1.35 10.03 -39.52 -0.40 -1.75 16 25 C -0.06 -0.52 9.72 -39.60 -0.38 -0.90 16 26 C 0.04 0.59 5.25 -3.77 -0.02 0.57 16 27 C 0.06 1.01 5.61 -3.77 -0.02 0.99 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 30 H 0.02 0.58 7.45 -51.93 -0.39 0.19 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 2.05 6.79 -51.93 -0.35 1.70 16 33 H 0.07 1.32 5.53 -51.93 -0.29 1.04 16 34 H 0.07 1.07 6.04 -51.93 -0.31 0.75 16 35 H 0.40 1.98 9.10 45.56 0.41 2.39 16 36 H 0.13 1.30 6.87 -52.48 -0.36 0.94 16 37 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 38 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 39 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 40 H 0.07 1.17 5.67 -51.93 -0.29 0.88 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 345.43 15.07 5.21 5.21 Total: -1.00 -33.71 345.43 -9.17 -42.88 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.88 Total: 1.41 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -2.70 Total: -5.10 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -1.41 Total: -47.43 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.75 Total: -12.53 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.71 -9.17 -42.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067698.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.176 kcal (2) G-P(sol) polarization free energy of solvation -33.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds