Wall clock time and date at job start Tue Mar 31 2020 13:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00100 * 2 1 4 4 H 1.48500 * 109.47544 * 269.99968 * 3 2 1 5 5 H 1.48504 * 109.47145 * 29.99951 * 3 2 1 6 6 H 1.48504 * 109.47215 * 149.99876 * 3 2 1 7 7 C 1.37880 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99931 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99795 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.47136 * 179.97438 * 9 7 2 11 11 C 1.46958 * 110.99753 * 170.00050 * 10 9 7 12 12 C 1.53053 * 109.35981 * 183.19043 * 11 10 9 13 13 N 1.46962 * 109.36363 * 301.59803 * 12 11 10 14 14 C 1.46902 * 110.99604 * 183.19083 * 13 12 11 15 15 C 1.50706 * 109.46577 * 169.99972 * 14 13 12 16 16 C 1.38473 * 119.82286 * 269.72242 * 15 14 13 17 17 C 1.37842 * 120.21858 * 179.72155 * 16 15 14 18 18 C 1.39714 * 119.87315 * 0.57747 * 17 16 15 19 19 C 1.47567 * 120.16687 * 179.71825 * 18 17 16 20 20 O 1.21495 * 119.99618 * 179.97438 * 19 18 17 21 21 O 1.34727 * 120.00164 * 359.97438 * 19 18 17 22 22 C 1.39869 * 119.65645 * 359.70231 * 18 17 16 23 23 F 1.35102 * 120.11022 * 180.02562 * 22 18 17 24 24 C 1.38208 * 119.82224 * 90.00362 * 15 14 13 25 25 C 1.46952 * 110.87866 * 59.32024 * 13 12 11 26 26 C 1.46952 * 110.99968 * 293.80150 * 10 9 7 27 27 H 0.97003 * 119.99906 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46962 * 59.99875 * 9 7 2 29 29 H 1.08998 * 109.47513 * 300.00010 * 9 7 2 30 30 H 1.08999 * 109.49097 * 63.22812 * 11 10 9 31 31 H 1.09000 * 109.48830 * 303.15378 * 11 10 9 32 32 H 1.09004 * 109.48868 * 181.63526 * 12 11 10 33 33 H 1.08996 * 109.49096 * 61.56557 * 12 11 10 34 34 H 1.09000 * 109.46894 * 50.00205 * 14 13 12 35 35 H 1.09000 * 109.47263 * 289.99771 * 14 13 12 36 36 H 1.07994 * 119.88674 * 0.02562 * 16 15 14 37 37 H 1.08000 * 120.05430 * 180.25352 * 17 16 15 38 38 H 0.96708 * 116.99811 * 179.97438 * 21 19 18 39 39 H 1.08000 * 119.94014 * 359.97438 * 24 15 14 40 40 H 1.09000 * 109.48724 * 60.65076 * 25 13 12 41 41 H 1.09001 * 109.48623 * 180.70590 * 25 13 12 42 42 H 1.08996 * 109.48806 * 296.77717 * 26 10 9 43 43 H 1.08994 * 109.49073 * 56.82039 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5791 -0.0010 11 6 5.4505 -2.6253 -0.2398 12 6 5.9067 -4.0845 -0.3113 13 7 5.5607 -4.7653 0.9443 14 6 6.0504 -6.1503 0.9443 15 6 5.8988 -6.7366 2.3244 16 6 6.9319 -6.6205 3.2392 17 6 6.7997 -7.1487 4.5055 18 6 5.6242 -7.8137 4.8630 19 6 5.4783 -8.3870 6.2149 20 8 4.4545 -8.9643 6.5226 21 8 6.4803 -8.2703 7.1079 22 6 4.5863 -7.9330 3.9330 23 9 3.4454 -8.5737 4.2690 24 6 4.7318 -7.3922 2.6683 25 6 4.1114 -4.7190 1.1830 26 6 3.6552 -3.2599 1.2545 27 1 -0.4850 0.8401 0.0004 28 1 3.8751 -0.6804 0.8888 29 1 3.8745 -0.6801 -0.8911 30 1 5.9696 -2.1216 0.5756 31 1 5.6800 -2.1260 -1.1811 32 1 6.9860 -4.1212 -0.4594 33 1 5.4080 -4.5811 -1.1436 34 1 7.1018 -6.1639 0.6572 35 1 5.4719 -6.7403 0.2334 36 1 7.8421 -6.1103 2.9611 37 1 7.6055 -7.0531 5.2182 38 1 6.3382 -8.6616 7.9808 39 1 3.9319 -7.4824 1.9482 40 1 3.5923 -5.2228 0.3677 41 1 3.8819 -5.2185 2.1243 42 1 4.1539 -2.7633 2.0868 43 1 2.5760 -3.2229 1.4029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:46 Heat of formation + Delta-G solvation = -89.962914 kcal Electronic energy + Delta-G solvation = -26801.947601 eV Core-core repulsion = 22761.784529 eV Total energy + Delta-G solvation = -4040.163072 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.15033 -40.63548 -39.64112 -38.39876 -36.39377 -35.42840 -32.79448 -31.96957 -31.05843 -30.49440 -28.94981 -26.86140 -24.67231 -23.65485 -22.99170 -22.74050 -21.30471 -21.02939 -19.32816 -18.49788 -17.85993 -17.05604 -16.82921 -16.55774 -16.33725 -15.94560 -15.42713 -15.18782 -14.89968 -14.69240 -14.47019 -14.38297 -14.03752 -13.72491 -13.52026 -13.38980 -13.14807 -12.56822 -12.46287 -12.19482 -12.06341 -11.96560 -11.86619 -11.66382 -11.45833 -10.99903 -10.91134 -10.85758 -10.62728 -10.43926 -10.11782 -9.85862 -9.46292 -9.28299 -9.09642 -8.58525 -8.33579 -7.40958 -6.06819 -4.04467 0.17415 0.82089 2.14047 2.58172 3.18424 3.27203 3.34928 3.36764 3.75380 4.01173 4.24688 4.34514 4.40572 4.59659 4.72104 4.82396 4.86507 5.06606 5.16686 5.24762 5.25292 5.39864 5.43345 5.57710 5.62207 5.65197 5.67814 5.74743 5.78789 5.92410 6.01920 6.09569 6.10149 6.24713 6.38155 6.44109 6.59568 6.79840 6.93279 7.00559 7.12007 7.52418 7.57038 7.87066 8.01268 8.63459 9.00923 9.54782 11.06231 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.002730 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.645720 B =10253.447864 C =10944.167322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.510 4.510 8 H 0.080 0.920 9 C 0.163 3.837 10 N -0.530 5.530 11 C 0.053 3.947 12 C 0.062 3.938 13 N -0.534 5.534 14 C 0.084 3.916 15 C -0.003 4.003 16 C -0.125 4.125 17 C -0.033 4.033 18 C -0.174 4.174 19 C 0.527 3.473 20 O -0.503 6.503 21 O -0.512 6.512 22 C 0.168 3.832 23 F -0.115 7.115 24 C -0.162 4.162 25 C 0.052 3.948 26 C 0.068 3.932 27 H 0.264 0.736 28 H -0.011 1.011 29 H 0.024 0.976 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.043 0.957 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.416 0.584 39 H 0.146 0.854 40 H 0.043 0.957 41 H 0.074 0.926 42 H 0.029 0.971 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.393 -16.625 7.715 25.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.549 4.549 8 H 0.098 0.902 9 C 0.037 3.963 10 N -0.255 5.255 11 C -0.076 4.076 12 C -0.066 4.066 13 N -0.259 5.259 14 C -0.043 4.043 15 C -0.003 4.003 16 C -0.144 4.144 17 C -0.051 4.051 18 C -0.176 4.176 19 C 0.371 3.629 20 O -0.391 6.391 21 O -0.324 6.324 22 C 0.148 3.852 23 F -0.092 7.092 24 C -0.181 4.181 25 C -0.076 4.076 26 C -0.061 4.061 27 H 0.074 0.926 28 H 0.007 0.993 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.158 0.842 37 H 0.165 0.835 38 H 0.275 0.725 39 H 0.164 0.836 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.048 0.952 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 17.954 -16.496 7.408 25.482 hybrid contribution -0.018 0.637 0.673 0.926 sum 17.937 -15.859 8.080 25.269 Atomic orbital electron populations 1.69894 1.06133 1.26868 1.50986 1.24903 0.94737 0.98878 0.94816 0.86860 0.80315 0.84011 0.78561 1.20162 1.21200 1.19260 1.21020 0.88711 0.94697 1.50433 0.90196 1.20150 0.97072 0.84003 0.95096 1.62119 1.10330 1.19202 1.33810 1.22118 0.90291 0.94593 1.00558 1.22167 0.99635 0.95084 0.89677 1.62227 1.15440 1.12891 1.35319 1.21153 1.01781 0.89744 0.91632 1.19954 0.92032 0.92094 0.96263 1.21099 0.99984 1.00577 0.92704 1.21350 0.95216 0.92037 0.96491 1.19047 0.97423 1.09281 0.91830 1.20585 0.80525 0.76669 0.85145 1.90969 1.29188 1.39956 1.79025 1.84528 1.45071 1.75284 1.27495 1.17618 0.81860 0.92975 0.92771 1.91614 1.46850 1.78227 1.92558 1.21113 0.99969 1.01664 0.95367 1.22380 0.86092 0.98518 1.00580 1.22011 1.01892 0.91479 0.90706 0.92643 0.99307 0.95809 0.95009 0.90833 0.90852 0.93869 0.89169 0.93121 0.84159 0.83490 0.72531 0.83603 0.93879 0.90780 0.95234 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.51 -14.35 9.03 -34.44 -0.31 -14.66 16 8 H 0.08 2.44 7.38 -52.49 -0.39 2.05 16 9 C 0.16 3.91 3.79 -4.97 -0.02 3.89 16 10 N -0.53 -10.80 4.70 -235.92 -1.11 -11.91 16 11 C 0.05 0.87 5.61 -3.76 -0.02 0.85 16 12 C 0.06 0.79 5.61 -3.76 -0.02 0.77 16 13 N -0.53 -6.71 4.70 -235.91 -1.11 -7.82 16 14 C 0.08 0.78 5.11 -4.97 -0.03 0.76 16 15 C 0.00 -0.02 4.90 -104.54 -0.51 -0.54 16 16 C -0.13 -1.01 9.67 -39.64 -0.38 -1.39 16 17 C -0.03 -0.27 9.61 -39.18 -0.38 -0.65 16 18 C -0.17 -1.84 5.88 -104.93 -0.62 -2.46 16 19 C 0.53 5.75 8.27 34.54 0.29 6.03 16 20 O -0.50 -7.16 16.13 -19.26 -0.31 -7.48 16 21 O -0.51 -3.65 12.68 -40.57 -0.51 -4.17 16 22 C 0.17 1.97 7.29 -38.94 -0.28 1.68 16 23 F -0.11 -1.59 15.55 2.25 0.04 -1.55 16 24 C -0.16 -1.66 7.87 -39.56 -0.31 -1.97 16 25 C 0.05 0.77 5.24 -3.77 -0.02 0.75 16 26 C 0.07 1.28 5.43 -3.77 -0.02 1.26 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H -0.01 -0.26 7.18 -51.93 -0.37 -0.64 16 29 H 0.02 0.57 7.45 -51.93 -0.39 0.18 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 1.14 8.07 -51.93 -0.42 0.72 16 32 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.66 7.96 -51.93 -0.41 0.25 16 35 H 0.05 0.46 8.06 -51.93 -0.42 0.04 16 36 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.15 0.89 7.61 -52.49 -0.40 0.49 16 38 H 0.42 1.15 9.11 45.56 0.42 1.56 16 39 H 0.15 1.39 7.98 -52.49 -0.42 0.97 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 1.02 5.94 -51.93 -0.31 0.71 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 1.97 6.79 -51.93 -0.35 1.62 16 LS Contribution 355.26 15.07 5.35 5.35 Total: -1.00 -34.06 355.26 -9.45 -43.51 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -5.16 Total: -2.14 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -2.73 Total: -3.81 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -1.44 Total: -46.41 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -0.83 Total: -11.64 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.06 -9.45 -43.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.456 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds