Wall clock time and date at job start Tue Mar 31 2020 13:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00100 * 2 1 4 4 H 1.48500 * 109.47544 * 269.99968 * 3 2 1 5 5 H 1.48504 * 109.47145 * 29.99951 * 3 2 1 6 6 H 1.48504 * 109.47215 * 149.99876 * 3 2 1 7 7 C 1.37880 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99931 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99795 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.47136 * 179.97438 * 9 7 2 11 11 C 1.46958 * 110.99753 * 170.00050 * 10 9 7 12 12 C 1.53053 * 109.35981 * 183.19043 * 11 10 9 13 13 N 1.46962 * 109.36363 * 301.59803 * 12 11 10 14 14 C 1.46902 * 110.99604 * 183.19083 * 13 12 11 15 15 C 1.50706 * 109.46577 * 169.99972 * 14 13 12 16 16 C 1.38473 * 119.82286 * 269.72242 * 15 14 13 17 17 C 1.37842 * 120.21858 * 179.72155 * 16 15 14 18 18 C 1.39714 * 119.87315 * 0.57747 * 17 16 15 19 19 C 1.47567 * 120.16687 * 179.71825 * 18 17 16 20 20 O 1.21495 * 119.99618 * 179.97438 * 19 18 17 21 21 O 1.34727 * 120.00164 * 359.97438 * 19 18 17 22 22 C 1.39869 * 119.65645 * 359.70231 * 18 17 16 23 23 F 1.35102 * 120.11022 * 180.02562 * 22 18 17 24 24 C 1.38208 * 119.82224 * 90.00362 * 15 14 13 25 25 C 1.46952 * 110.87866 * 59.32024 * 13 12 11 26 26 C 1.46952 * 110.99968 * 293.80150 * 10 9 7 27 27 H 0.97003 * 119.99906 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46962 * 59.99875 * 9 7 2 29 29 H 1.08998 * 109.47513 * 300.00010 * 9 7 2 30 30 H 1.08999 * 109.49097 * 63.22812 * 11 10 9 31 31 H 1.09000 * 109.48830 * 303.15378 * 11 10 9 32 32 H 1.09004 * 109.48868 * 181.63526 * 12 11 10 33 33 H 1.08996 * 109.49096 * 61.56557 * 12 11 10 34 34 H 1.09000 * 109.46894 * 50.00205 * 14 13 12 35 35 H 1.09000 * 109.47263 * 289.99771 * 14 13 12 36 36 H 1.07994 * 119.88674 * 0.02562 * 16 15 14 37 37 H 1.08000 * 120.05430 * 180.25352 * 17 16 15 38 38 H 0.96708 * 116.99811 * 179.97438 * 21 19 18 39 39 H 1.08000 * 119.94014 * 359.97438 * 24 15 14 40 40 H 1.09000 * 109.48724 * 60.65076 * 25 13 12 41 41 H 1.09001 * 109.48623 * 180.70590 * 25 13 12 42 42 H 1.08996 * 109.48806 * 296.77717 * 26 10 9 43 43 H 1.08994 * 109.49073 * 56.82039 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5791 -0.0010 11 6 5.4505 -2.6253 -0.2398 12 6 5.9067 -4.0845 -0.3113 13 7 5.5607 -4.7653 0.9443 14 6 6.0504 -6.1503 0.9443 15 6 5.8988 -6.7366 2.3244 16 6 6.9319 -6.6205 3.2392 17 6 6.7997 -7.1487 4.5055 18 6 5.6242 -7.8137 4.8630 19 6 5.4783 -8.3870 6.2149 20 8 4.4545 -8.9643 6.5226 21 8 6.4803 -8.2703 7.1079 22 6 4.5863 -7.9330 3.9330 23 9 3.4454 -8.5737 4.2690 24 6 4.7318 -7.3922 2.6683 25 6 4.1114 -4.7190 1.1830 26 6 3.6552 -3.2599 1.2545 27 1 -0.4850 0.8401 0.0004 28 1 3.8751 -0.6804 0.8888 29 1 3.8745 -0.6801 -0.8911 30 1 5.9696 -2.1216 0.5756 31 1 5.6800 -2.1260 -1.1811 32 1 6.9860 -4.1212 -0.4594 33 1 5.4080 -4.5811 -1.1436 34 1 7.1018 -6.1639 0.6572 35 1 5.4719 -6.7403 0.2334 36 1 7.8421 -6.1103 2.9611 37 1 7.6055 -7.0531 5.2182 38 1 6.3382 -8.6616 7.9808 39 1 3.9319 -7.4824 1.9482 40 1 3.5923 -5.2228 0.3677 41 1 3.8819 -5.2185 2.1243 42 1 4.1539 -2.7633 2.0868 43 1 2.5760 -3.2229 1.4029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601067881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:46 Heat of formation + Delta-G solvation = -115.672465 kcal Electronic energy + Delta-G solvation = -26803.062451 eV Core-core repulsion = 22761.784529 eV Total energy + Delta-G solvation = -4041.277922 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.07688 -41.42009 -40.58062 -39.46765 -37.14948 -36.74179 -34.65515 -33.12604 -31.93004 -31.61954 -30.46063 -28.16041 -25.91585 -24.79169 -23.94916 -23.64386 -22.84269 -21.99792 -20.63594 -19.24793 -18.95570 -18.66075 -17.86881 -17.37998 -17.29427 -17.05755 -16.40340 -16.30078 -16.03124 -15.85626 -15.84186 -15.44674 -15.30660 -15.14198 -14.69081 -14.41171 -14.30055 -14.07488 -13.57388 -13.39744 -13.05196 -13.01755 -12.86914 -12.71291 -12.64819 -12.43881 -12.25245 -12.15464 -11.98415 -11.83423 -11.73622 -11.48250 -11.32492 -10.78635 -10.20797 -9.85082 -9.34673 -9.01985 -8.29040 -6.32786 -0.59014 0.10293 1.34457 1.35333 1.36333 1.46994 1.90529 2.34051 2.43188 2.97478 3.03923 3.09395 3.23694 3.48589 3.66029 3.94830 3.98933 4.10345 4.17573 4.21108 4.31175 4.36729 4.44203 4.54631 4.64019 4.67506 4.78699 4.81570 4.89390 4.92166 4.96168 4.99260 5.03185 5.06965 5.11514 5.19775 5.39392 5.47547 5.52672 5.68777 5.91536 5.99890 6.10868 6.36590 6.66323 6.73588 6.86782 7.31112 8.87643 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.002730 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.645720 B =10253.447864 C =10944.167322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.950 3.050 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.251 1.251 7 C -0.517 4.517 8 H 0.035 0.965 9 C 0.173 3.827 10 N -0.546 5.546 11 C 0.049 3.951 12 C 0.068 3.932 13 N -0.536 5.536 14 C 0.087 3.913 15 C -0.007 4.007 16 C -0.113 4.113 17 C -0.022 4.022 18 C -0.187 4.187 19 C 0.530 3.470 20 O -0.547 6.547 21 O -0.496 6.496 22 C 0.136 3.864 23 F -0.137 7.137 24 C -0.166 4.166 25 C 0.067 3.933 26 C 0.071 3.929 27 H 0.267 0.733 28 H -0.015 1.015 29 H 0.031 0.969 30 H 0.032 0.968 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.039 0.961 34 H 0.125 0.875 35 H 0.055 0.945 36 H 0.172 0.828 37 H 0.174 0.826 38 H 0.435 0.565 39 H 0.144 0.856 40 H 0.035 0.965 41 H 0.081 0.919 42 H 0.023 0.977 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.890 -16.106 7.487 28.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.773 3.227 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.175 1.175 7 C -0.556 4.556 8 H 0.054 0.946 9 C 0.046 3.954 10 N -0.271 5.271 11 C -0.079 4.079 12 C -0.059 4.059 13 N -0.261 5.261 14 C -0.039 4.039 15 C -0.008 4.008 16 C -0.131 4.131 17 C -0.040 4.040 18 C -0.189 4.189 19 C 0.376 3.624 20 O -0.439 6.439 21 O -0.310 6.310 22 C 0.117 3.883 23 F -0.116 7.116 24 C -0.185 4.185 25 C -0.061 4.061 26 C -0.058 4.058 27 H 0.076 0.924 28 H 0.002 0.998 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.100 0.900 32 H 0.133 0.867 33 H 0.058 0.942 34 H 0.143 0.857 35 H 0.073 0.927 36 H 0.190 0.810 37 H 0.192 0.808 38 H 0.298 0.702 39 H 0.162 0.838 40 H 0.053 0.947 41 H 0.100 0.900 42 H 0.041 0.959 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 22.504 -16.005 7.193 28.536 hybrid contribution -1.382 0.392 0.781 1.635 sum 21.122 -15.613 7.974 27.449 Atomic orbital electron populations 1.70059 1.08199 1.28131 1.52598 1.25883 0.95620 1.03277 0.94331 0.85679 0.79250 0.78429 0.79353 1.18720 1.20871 1.17530 1.21267 0.91211 0.93157 1.49917 0.94643 1.19899 0.94105 0.86476 0.94930 1.62028 1.13668 1.16955 1.34445 1.22287 0.87123 0.97594 1.00886 1.22174 1.01866 0.92401 0.89460 1.62189 1.13142 1.15305 1.35423 1.21268 1.03616 0.87472 0.91591 1.20070 0.91927 0.92012 0.96798 1.21465 1.00417 0.99311 0.91937 1.21662 0.94627 0.90510 0.97191 1.19253 0.98105 1.09938 0.91617 1.20721 0.80300 0.75711 0.85680 1.90952 1.31027 1.42070 1.79885 1.84478 1.43340 1.74843 1.28335 1.17972 0.81918 0.94440 0.93990 1.91549 1.48183 1.78997 1.92850 1.21187 1.00678 1.01849 0.94834 1.22112 0.88123 0.95097 1.00811 1.21895 0.99538 0.94253 0.90076 0.92440 0.99765 0.95058 0.94951 0.89960 0.86735 0.94241 0.85732 0.92708 0.81029 0.80816 0.70248 0.83810 0.94670 0.90030 0.95887 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 2 C 0.01 0.35 5.47 84.66 0.46 0.82 16 3 Si 0.95 44.13 27.47 68.60 1.88 46.02 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 7 C -0.52 -30.20 9.03 25.60 0.23 -29.97 16 8 H 0.04 2.32 7.38 -2.91 -0.02 2.30 16 9 C 0.17 8.30 3.79 85.55 0.32 8.62 16 10 N -0.55 -22.20 4.70 -900.31 -4.23 -26.44 16 11 C 0.05 1.48 5.61 86.31 0.48 1.96 16 12 C 0.07 1.49 5.61 86.31 0.48 1.97 16 13 N -0.54 -11.78 4.70 -900.27 -4.23 -16.01 16 14 C 0.09 1.27 5.11 85.56 0.44 1.70 16 15 C -0.01 -0.11 4.90 -19.81 -0.10 -0.21 16 16 C -0.11 -1.35 9.67 22.23 0.22 -1.13 16 17 C -0.02 -0.29 9.61 22.53 0.22 -0.07 16 18 C -0.19 -3.78 5.88 -20.06 -0.12 -3.90 16 19 C 0.53 11.30 8.27 70.28 0.58 11.88 16 20 O -0.55 -16.09 16.13 19.85 0.32 -15.77 16 21 O -0.50 -6.08 12.68 -56.37 -0.71 -6.79 16 22 C 0.14 3.25 7.29 22.68 0.17 3.42 16 23 F -0.14 -4.09 15.55 44.97 0.70 -3.39 16 24 C -0.17 -3.32 7.87 22.28 0.18 -3.14 16 25 C 0.07 1.94 5.24 86.31 0.45 2.39 16 26 C 0.07 2.75 5.43 86.31 0.47 3.22 16 27 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 28 H -0.02 -0.74 7.18 -2.39 -0.02 -0.76 16 29 H 0.03 1.45 7.45 -2.39 -0.02 1.44 16 30 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 2.31 8.07 -2.39 -0.02 2.29 16 32 H 0.11 1.64 8.07 -2.39 -0.02 1.63 16 33 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.12 1.05 7.96 -2.39 -0.02 1.03 16 35 H 0.05 0.80 8.06 -2.39 -0.02 0.78 16 36 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16 37 H 0.17 1.33 7.61 -2.91 -0.02 1.31 16 38 H 0.44 1.58 9.11 -74.05 -0.67 0.90 16 39 H 0.14 2.79 7.98 -2.91 -0.02 2.77 16 40 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 2.24 5.94 -2.39 -0.01 2.22 16 42 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.05 2.40 6.79 -2.39 -0.02 2.38 16 Total: -1.00 -78.68 355.26 -1.18 -79.87 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: 0.31 Total: 4.60 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 4.48 Total: -2.44 kcal Atomic # 7 Polarization: -93.93 SS G_CDS: -8.16 Total: -102.10 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.39 Total: -22.56 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.70 Total: -3.39 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.02 kcal Total: -78.68 -1.18 -79.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.805 kcal (2) G-P(sol) polarization free energy of solvation -78.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds