Wall clock time and date at job start Tue Mar 31 2020 13:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99992 * 2 1 4 4 H 1.48500 * 109.46906 * 270.00311 * 3 2 1 5 5 H 1.48494 * 109.46980 * 30.00203 * 3 2 1 6 6 H 1.48500 * 109.46829 * 150.00226 * 3 2 1 7 7 C 1.37879 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00055 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99547 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.46658 * 180.02562 * 9 7 2 11 11 C 1.46953 * 110.99968 * 293.79542 * 10 9 7 12 12 C 1.53048 * 109.36563 * 176.81276 * 11 10 9 13 13 N 1.46961 * 109.36389 * 58.40319 * 12 11 10 14 14 C 1.46895 * 110.99974 * 176.81344 * 13 12 11 15 15 H 1.09004 * 109.47149 * 181.14937 * 14 13 12 16 16 C 1.50699 * 109.47394 * 61.14576 * 14 13 12 17 17 O 1.20823 * 120.00046 * 0.02562 * 16 14 13 18 18 O 1.34229 * 120.00106 * 179.97438 * 16 14 13 19 19 C 1.50707 * 109.47229 * 301.14726 * 14 13 12 20 20 C 1.38211 * 120.01094 * 103.51322 * 19 14 13 21 21 C 1.38222 * 120.02397 * 179.97438 * 20 19 14 22 22 C 1.38270 * 120.05180 * 0.02562 * 21 20 19 23 23 C 1.38171 * 120.02389 * 359.97438 * 22 21 20 24 24 C 1.38439 * 120.01003 * 283.23874 * 19 14 13 25 25 F 1.35097 * 120.02634 * 359.97438 * 24 19 14 26 26 C 1.46956 * 110.87679 * 300.68271 * 13 12 11 27 27 C 1.46958 * 110.99570 * 169.99916 * 10 9 7 28 28 H 0.97000 * 119.99889 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47278 * 60.00037 * 9 7 2 30 30 H 1.09002 * 109.47138 * 300.00067 * 9 7 2 31 31 H 1.08995 * 109.49375 * 296.78419 * 11 10 9 32 32 H 1.09005 * 109.48644 * 56.84550 * 11 10 9 33 33 H 1.09003 * 109.48840 * 298.43595 * 12 11 10 34 34 H 1.09002 * 109.51100 * 178.38541 * 12 11 10 35 35 H 0.96701 * 116.99952 * 180.02562 * 18 16 14 36 36 H 1.08003 * 119.99213 * 0.02562 * 20 19 14 37 37 H 1.08003 * 119.97527 * 180.02562 * 21 20 19 38 38 H 1.08004 * 119.98616 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.01444 * 179.97438 * 23 22 21 40 40 H 1.08998 * 109.48914 * 299.34362 * 26 13 12 41 41 H 1.09003 * 109.50274 * 179.30044 * 26 13 12 42 42 H 1.08998 * 109.49370 * 303.15448 * 27 10 9 43 43 H 1.09003 * 109.49137 * 63.22088 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5791 -0.0022 11 6 3.6553 -3.2609 1.2527 12 6 4.1115 -4.7200 1.1800 13 7 5.5608 -4.7660 0.9411 14 6 6.0504 -6.1510 0.9400 15 1 7.1289 -6.1550 0.7815 16 6 5.3771 -6.9210 -0.1666 17 8 4.5723 -6.3722 -0.8814 18 8 5.6722 -8.2163 -0.3589 19 6 5.7351 -6.7964 2.2649 20 6 4.6866 -7.6912 2.3658 21 6 4.3976 -8.2837 3.5807 22 6 5.1564 -7.9816 4.6964 23 6 6.2051 -7.0873 4.5978 24 6 6.4992 -6.4975 3.3800 25 9 7.5281 -5.6276 3.2811 26 6 5.9067 -4.0841 -0.3138 27 6 5.4505 -2.6250 -0.2411 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6804 0.8888 30 1 3.8745 -0.6800 -0.8911 31 1 4.1540 -2.7651 2.0855 32 1 2.5760 -3.2243 1.4010 33 1 3.5923 -5.2231 0.3642 34 1 3.8819 -5.2206 2.1206 35 1 5.2151 -8.6681 -1.0814 36 1 4.0935 -7.9283 1.4950 37 1 3.5783 -8.9831 3.6586 38 1 4.9293 -8.4449 5.6452 39 1 6.7974 -6.8512 5.4695 40 1 5.4080 -4.5800 -1.1466 41 1 6.9859 -4.1207 -0.4625 42 1 5.6801 -2.1249 -1.1819 43 1 5.9696 -2.1219 0.5747 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:00 Heat of formation + Delta-G solvation = -75.070700 kcal Electronic energy + Delta-G solvation = -28263.219459 eV Core-core repulsion = 24223.702161 eV Total energy + Delta-G solvation = -4039.517297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.97255 -41.25459 -39.08336 -38.41734 -36.33585 -35.25497 -32.76409 -31.79279 -30.77202 -30.44106 -28.85354 -26.95979 -24.45604 -23.53094 -23.32448 -22.32206 -21.19335 -20.69961 -19.36465 -18.29028 -17.89705 -17.04871 -16.81148 -16.47456 -16.20004 -15.81325 -15.63542 -15.21128 -14.83648 -14.44939 -14.31755 -14.19076 -13.83865 -13.66876 -13.41477 -13.24392 -12.97242 -12.64296 -12.46488 -12.16664 -11.96057 -11.88885 -11.76615 -11.46943 -11.33727 -10.97911 -10.91351 -10.60778 -10.49700 -10.38301 -10.05769 -9.79593 -9.29757 -9.20892 -8.89826 -8.53069 -8.26733 -7.28232 -6.01432 -3.98319 0.85344 0.95119 1.94712 2.79766 3.26176 3.31576 3.38669 3.41595 3.88491 4.05976 4.18749 4.45692 4.51082 4.67423 4.81105 4.86286 4.92814 5.05393 5.15203 5.23782 5.30956 5.50007 5.56794 5.67869 5.77444 5.81054 5.86642 5.94604 5.98386 6.00887 6.11594 6.17263 6.30054 6.38702 6.59642 6.60678 6.67782 6.86233 6.92711 6.99523 7.14388 7.64265 7.71238 7.96846 8.10718 8.70798 9.07387 9.60635 11.11753 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016547 B = 0.003604 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.754656 B = 7767.696094 C = 8095.059528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.507 4.507 8 H 0.080 0.920 9 C 0.162 3.838 10 N -0.526 5.526 11 C 0.072 3.928 12 C 0.037 3.963 13 N -0.498 5.498 14 C 0.137 3.863 15 H 0.126 0.874 16 C 0.447 3.553 17 O -0.487 6.487 18 O -0.518 6.518 19 C -0.108 4.108 20 C -0.077 4.077 21 C -0.128 4.128 22 C -0.085 4.085 23 C -0.157 4.157 24 C 0.132 3.868 25 F -0.128 7.128 26 C 0.041 3.959 27 C 0.058 3.942 28 H 0.263 0.737 29 H -0.011 1.011 30 H 0.024 0.976 31 H 0.027 0.973 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.405 0.595 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.825 -19.645 6.784 25.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.546 4.546 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.250 5.250 11 C -0.056 4.056 12 C -0.090 4.090 13 N -0.222 5.222 14 C 0.027 3.973 15 H 0.144 0.856 16 C 0.286 3.714 17 O -0.373 6.373 18 O -0.330 6.330 19 C -0.109 4.109 20 C -0.095 4.095 21 C -0.147 4.147 22 C -0.104 4.104 23 C -0.175 4.175 24 C 0.112 3.888 25 F -0.107 7.107 26 C -0.086 4.086 27 C -0.071 4.071 28 H 0.073 0.927 29 H 0.007 0.993 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.264 0.736 36 H 0.143 0.857 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 14.678 -19.089 6.880 25.044 hybrid contribution 0.258 0.871 -0.552 1.063 sum 14.936 -18.218 6.328 24.394 Atomic orbital electron populations 1.69897 1.06117 1.26763 1.51286 1.24893 0.94720 0.98808 0.94885 0.86865 0.80332 0.84039 0.78553 1.20185 1.21243 1.19265 1.21038 0.88742 0.94696 1.50083 0.90172 1.20159 0.97067 0.84107 0.95054 1.62086 1.10249 1.18897 1.33789 1.21963 1.01784 0.91272 0.90604 1.22625 0.85862 0.99147 1.01399 1.62837 1.16666 1.07858 1.34822 1.20454 1.01279 0.87822 0.87793 0.85608 1.25078 0.80465 0.80492 0.85341 1.90779 1.31975 1.68681 1.45876 1.84640 1.67230 1.25693 1.55401 1.19272 0.98147 1.00182 0.93348 1.20937 0.95181 0.94979 0.98421 1.21144 1.00411 1.00790 0.92316 1.21049 0.94001 0.96320 0.99000 1.21156 1.00349 0.99549 0.96479 1.17333 0.86924 0.90763 0.93791 1.91531 1.55653 1.66733 1.96746 1.22494 0.99632 0.95633 0.90813 1.22053 0.90308 0.94202 1.00495 0.92725 0.99337 0.95823 0.95488 0.88911 0.90885 0.91247 0.73640 0.85708 0.85093 0.84874 0.84477 0.91053 0.91230 0.90778 0.95159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 21.94 27.47 -169.99 -4.67 17.27 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 7 C -0.51 -14.76 9.03 -34.44 -0.31 -15.07 16 8 H 0.08 2.54 7.37 -52.49 -0.39 2.15 16 9 C 0.16 4.09 3.79 -4.97 -0.02 4.07 16 10 N -0.53 -11.64 4.70 -235.91 -1.11 -12.75 16 11 C 0.07 1.49 5.43 -3.77 -0.02 1.47 16 12 C 0.04 0.63 4.88 -3.77 -0.02 0.61 16 13 N -0.50 -7.58 4.71 -229.27 -1.08 -8.65 16 14 C 0.14 1.70 2.24 -70.02 -0.16 1.55 16 15 H 0.13 1.39 8.04 -51.93 -0.42 0.97 16 16 C 0.45 5.46 5.41 36.01 0.19 5.66 16 17 O -0.49 -7.65 12.33 -18.75 -0.23 -7.88 16 18 O -0.52 -4.64 12.59 -39.26 -0.49 -5.14 16 19 C -0.11 -1.24 4.03 -104.55 -0.42 -1.66 16 20 C -0.08 -0.78 8.05 -39.60 -0.32 -1.10 16 21 C -0.13 -1.07 10.04 -39.58 -0.40 -1.47 16 22 C -0.09 -0.66 10.04 -39.59 -0.40 -1.06 16 23 C -0.16 -1.42 10.03 -39.52 -0.40 -1.82 16 24 C 0.13 1.49 7.25 -39.42 -0.29 1.21 16 25 F -0.13 -1.61 16.72 2.25 0.04 -1.58 16 26 C 0.04 0.65 5.24 -3.77 -0.02 0.63 16 27 C 0.06 1.07 5.61 -3.77 -0.02 1.05 16 28 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 29 H -0.01 -0.28 7.18 -51.93 -0.37 -0.66 16 30 H 0.02 0.59 7.45 -51.93 -0.39 0.21 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 2.10 6.79 -51.93 -0.35 1.74 16 33 H 0.07 1.37 5.54 -51.93 -0.29 1.09 16 34 H 0.07 1.10 6.44 -51.93 -0.33 0.76 16 35 H 0.40 2.06 9.10 45.56 0.41 2.47 16 36 H 0.13 1.26 6.38 -52.48 -0.34 0.92 16 37 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 39 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.07 1.24 5.66 -51.93 -0.29 0.94 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 344.72 15.07 5.19 5.19 Total: -1.00 -34.18 344.72 -9.14 -43.32 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -4.88 Total: 1.50 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -2.69 Total: -4.03 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -1.41 Total: -48.66 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -0.73 Total: -13.02 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.18 -9.14 -43.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.753 kcal (2) G-P(sol) polarization free energy of solvation -34.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds