Wall clock time and date at job start Tue Mar 31 2020 13:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00015 * 2 1 4 4 H 1.48504 * 109.47354 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47203 * 300.00101 * 3 2 1 6 6 H 1.48502 * 109.47209 * 59.99935 * 3 2 1 7 7 C 1.37878 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00173 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99759 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47017 * 185.00525 * 9 7 2 11 11 C 1.46957 * 111.00290 * 295.17996 * 10 9 7 12 12 C 1.53048 * 109.36349 * 183.19098 * 11 10 9 13 13 N 1.46959 * 109.36471 * 301.59571 * 12 11 10 14 14 C 1.46898 * 111.00390 * 183.19458 * 13 12 11 15 15 H 1.09007 * 109.46674 * 300.00108 * 14 13 12 16 16 C 1.50699 * 109.47337 * 59.99473 * 14 13 12 17 17 O 1.20825 * 120.00002 * 0.02562 * 16 14 13 18 18 O 1.34226 * 120.00077 * 179.97438 * 16 14 13 19 19 C 1.50694 * 109.47152 * 180.02562 * 14 13 12 20 20 C 1.38218 * 120.01812 * 339.99581 * 19 14 13 21 21 C 1.38218 * 120.03184 * 179.97438 * 20 19 14 22 22 C 1.38266 * 120.04752 * 359.97438 * 21 20 19 23 23 C 1.38173 * 120.02911 * 359.97438 * 22 21 20 24 24 C 1.38449 * 120.01059 * 160.22905 * 19 14 13 25 25 F 1.35096 * 120.02773 * 0.04343 * 24 19 14 26 26 C 1.46957 * 110.87830 * 59.32298 * 13 12 11 27 27 C 1.46960 * 110.99870 * 58.98284 * 10 9 7 28 28 H 0.96999 * 119.99685 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47332 * 65.00817 * 9 7 2 30 30 H 1.09002 * 109.47223 * 305.00781 * 9 7 2 31 31 H 1.08997 * 109.48663 * 63.21896 * 11 10 9 32 32 H 1.08995 * 109.48496 * 303.15397 * 11 10 9 33 33 H 1.09000 * 109.48467 * 181.63080 * 12 11 10 34 34 H 1.09001 * 109.51280 * 61.57564 * 12 11 10 35 35 H 0.96698 * 117.00195 * 180.02562 * 18 16 14 36 36 H 1.08005 * 119.98202 * 359.95548 * 20 19 14 37 37 H 1.08001 * 119.97729 * 179.97438 * 21 20 19 38 38 H 1.08006 * 119.98610 * 180.02562 * 22 21 20 39 39 H 1.08000 * 120.01747 * 180.02562 * 23 22 21 40 40 H 1.08997 * 109.48663 * 60.64976 * 26 13 12 41 41 H 1.09004 * 109.49015 * 180.71695 * 26 13 12 42 42 H 1.09003 * 109.48402 * 296.77911 * 27 10 9 43 43 H 1.08995 * 109.48959 * 56.81779 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2011 -3.6130 0.1220 11 6 3.0790 -3.6872 -1.0542 12 6 3.9975 -4.9046 -0.9258 13 7 4.7855 -4.7925 0.3096 14 6 5.7355 -5.9063 0.4311 15 1 5.1892 -6.8494 0.4493 16 6 6.6772 -5.8940 -0.7454 17 8 6.5684 -5.0443 -1.5974 18 8 7.6374 -6.8264 -0.8462 19 6 6.5231 -5.7578 1.7072 20 6 6.6032 -4.5270 2.3311 21 6 7.3251 -4.3906 3.5018 22 6 7.9674 -5.4851 4.0507 23 6 7.8879 -6.7167 3.4295 24 6 7.1707 -6.8531 2.2527 25 9 7.0978 -8.0554 1.6409 26 6 3.9075 -4.7183 1.4858 27 6 2.9889 -3.5009 1.3575 28 1 -0.4849 0.8401 0.0004 29 1 0.6937 -2.5969 -0.9311 30 1 0.5585 -2.5188 0.8420 31 1 3.6821 -2.7813 -1.1154 32 1 2.4727 -3.7824 -1.9550 33 1 4.6694 -4.9451 -1.7832 34 1 3.3957 -5.8128 -0.8922 35 1 8.2175 -6.7775 -1.6183 36 1 6.1018 -3.6714 1.9033 37 1 7.3875 -3.4284 3.9883 38 1 8.5309 -5.3774 4.9658 39 1 8.3894 -7.5716 3.8586 40 1 3.3044 -5.6242 1.5470 41 1 4.5138 -4.6230 2.3867 42 1 3.5910 -2.5929 1.3236 43 1 2.3170 -3.4599 2.2148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:03 Heat of formation + Delta-G solvation = -75.065799 kcal Electronic energy + Delta-G solvation = -28253.842268 eV Core-core repulsion = 24214.325183 eV Total energy + Delta-G solvation = -4039.517085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.01420 -40.88292 -39.26359 -38.30693 -36.25426 -35.32277 -32.74296 -31.60050 -30.92410 -30.18702 -28.52620 -26.57917 -24.49219 -23.36844 -22.98074 -22.31209 -21.69221 -20.71556 -19.17145 -18.16654 -17.77681 -16.86551 -16.68272 -16.45828 -16.27881 -15.57492 -15.38544 -15.33327 -14.56555 -14.47905 -14.33178 -14.10107 -13.98213 -13.53657 -13.27897 -13.12090 -12.91713 -12.76112 -12.25900 -12.02294 -11.87389 -11.75426 -11.42376 -11.29159 -11.08481 -11.03637 -10.81311 -10.55012 -10.50055 -10.25028 -10.01635 -9.76620 -9.48455 -9.04945 -8.86024 -8.41578 -8.28846 -7.16227 -6.00938 -4.09607 0.86251 1.02718 2.10721 2.74918 3.28118 3.36504 3.39093 3.41118 3.87081 4.11157 4.26890 4.42953 4.62008 4.76382 4.96885 5.05130 5.07621 5.11783 5.24179 5.29703 5.38413 5.57444 5.61542 5.78199 5.87163 5.87394 5.93143 5.94833 6.12829 6.16267 6.22937 6.27924 6.46133 6.62197 6.67749 6.78189 6.83520 7.07271 7.12637 7.32918 7.54580 7.83361 7.91979 8.06126 8.28934 8.31656 9.01333 9.57393 11.04183 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016472 B = 0.003735 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.463368 B = 7495.603129 C = 8120.498704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.187 3.813 10 N -0.545 5.545 11 C 0.068 3.932 12 C 0.045 3.955 13 N -0.515 5.515 14 C 0.139 3.861 15 H 0.087 0.913 16 C 0.486 3.514 17 O -0.484 6.484 18 O -0.512 6.512 19 C -0.126 4.126 20 C -0.058 4.058 21 C -0.137 4.137 22 C -0.084 4.084 23 C -0.163 4.163 24 C 0.120 3.880 25 F -0.131 7.131 26 C 0.049 3.951 27 C 0.068 3.932 28 H 0.261 0.739 29 H 0.027 0.973 30 H 0.034 0.966 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.033 0.967 35 H 0.409 0.591 36 H 0.153 0.847 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.039 0.961 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.615 -14.866 5.888 23.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.586 4.586 8 H 0.078 0.922 9 C 0.061 3.939 10 N -0.269 5.269 11 C -0.060 4.060 12 C -0.082 4.082 13 N -0.242 5.242 14 C 0.029 3.971 15 H 0.104 0.896 16 C 0.326 3.674 17 O -0.370 6.370 18 O -0.324 6.324 19 C -0.127 4.127 20 C -0.076 4.076 21 C -0.155 4.155 22 C -0.102 4.102 23 C -0.182 4.182 24 C 0.100 3.900 25 F -0.109 7.109 26 C -0.078 4.078 27 C -0.061 4.061 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.051 0.949 35 H 0.268 0.732 36 H 0.171 0.829 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.057 0.943 41 H 0.099 0.901 42 H 0.070 0.930 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 16.139 -14.583 5.945 22.550 hybrid contribution 0.762 0.829 -0.649 1.300 sum 16.902 -13.753 5.296 22.425 Atomic orbital electron populations 1.69958 1.06027 1.26666 1.50436 1.24958 0.94730 0.99135 0.94954 0.86604 0.80256 0.83976 0.77593 1.19753 1.21010 1.21011 1.21806 0.93498 0.91977 1.51286 0.92199 1.19737 0.90842 0.85534 0.97769 1.62721 1.17003 1.46340 1.00854 1.21875 0.93886 0.95907 0.94373 1.22625 0.95204 0.98607 0.91748 1.61944 1.18350 1.39391 1.04507 1.19744 0.92185 0.96781 0.88344 0.89592 1.23003 0.79716 0.78059 0.86577 1.90699 1.69216 1.36141 1.40953 1.84553 1.43748 1.53239 1.50824 1.19409 1.02160 0.93943 0.97218 1.21292 0.95352 0.96950 0.94032 1.21299 0.98235 0.99437 0.96532 1.21083 0.97954 0.91804 0.99379 1.21075 1.02203 0.99521 0.95432 1.17486 0.99237 0.80478 0.92761 1.91516 1.94537 1.42525 1.82360 1.22577 0.93792 0.99511 0.91912 1.21896 0.94773 0.95252 0.94204 0.92925 0.95482 0.94752 0.93178 0.91237 0.88695 0.94902 0.73224 0.82920 0.84940 0.85040 0.84705 0.94305 0.90099 0.93044 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.55 -14.94 7.66 -34.44 -0.26 -15.20 16 8 H 0.06 1.65 5.82 -52.49 -0.31 1.34 16 9 C 0.19 4.79 5.14 -4.98 -0.03 4.76 16 10 N -0.54 -11.66 4.92 -235.91 -1.16 -12.82 16 11 C 0.07 1.37 5.32 -3.77 -0.02 1.35 16 12 C 0.05 0.76 5.21 -3.77 -0.02 0.74 16 13 N -0.52 -8.02 3.54 -229.28 -0.81 -8.84 16 14 C 0.14 1.87 1.92 -70.02 -0.13 1.74 16 15 H 0.09 1.11 7.95 -51.93 -0.41 0.70 16 16 C 0.49 6.54 7.32 36.01 0.26 6.80 16 17 O -0.48 -7.87 14.59 -18.75 -0.27 -8.15 16 18 O -0.51 -5.31 12.36 -39.25 -0.48 -5.80 16 19 C -0.13 -1.53 4.41 -104.55 -0.46 -2.00 16 20 C -0.06 -0.68 7.25 -39.60 -0.29 -0.97 16 21 C -0.14 -1.30 10.04 -39.58 -0.40 -1.69 16 22 C -0.08 -0.69 10.04 -39.59 -0.40 -1.09 16 23 C -0.16 -1.50 10.03 -39.51 -0.40 -1.89 16 24 C 0.12 1.35 6.97 -39.41 -0.27 1.08 16 25 F -0.13 -1.56 15.93 2.25 0.04 -1.52 16 26 C 0.05 0.76 4.72 -3.77 -0.02 0.74 16 27 C 0.07 1.29 5.24 -3.76 -0.02 1.27 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.03 0.74 8.12 -51.93 -0.42 0.32 16 30 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.05 1.13 6.78 -51.93 -0.35 0.77 16 32 H 0.07 1.39 8.12 -51.93 -0.42 0.96 16 33 H 0.10 1.62 5.30 -51.93 -0.28 1.34 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.41 2.42 9.10 45.56 0.41 2.84 16 36 H 0.15 2.02 6.45 -52.48 -0.34 1.68 16 37 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 1.10 4.97 -51.93 -0.26 0.84 16 42 H 0.05 1.08 6.62 -51.93 -0.34 0.74 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 346.50 15.07 5.22 5.22 Total: -1.00 -31.80 346.50 -9.12 -40.91 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -4.81 Total: 2.61 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -2.55 Total: -2.65 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -1.24 Total: -47.11 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.76 Total: -13.94 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.80 -9.12 -40.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.153 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds