Wall clock time and date at job start Tue Mar 31 2020 13:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00015 * 2 1 4 4 H 1.48504 * 109.47354 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47203 * 300.00101 * 3 2 1 6 6 H 1.48502 * 109.47209 * 59.99935 * 3 2 1 7 7 C 1.37878 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00173 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99759 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47017 * 185.00525 * 9 7 2 11 11 C 1.46957 * 111.00290 * 295.17996 * 10 9 7 12 12 C 1.53048 * 109.36349 * 183.19098 * 11 10 9 13 13 N 1.46959 * 109.36471 * 301.59571 * 12 11 10 14 14 C 1.46898 * 111.00390 * 183.19458 * 13 12 11 15 15 H 1.09007 * 109.46674 * 300.00108 * 14 13 12 16 16 C 1.50699 * 109.47337 * 59.99473 * 14 13 12 17 17 O 1.20825 * 120.00002 * 0.02562 * 16 14 13 18 18 O 1.34226 * 120.00077 * 179.97438 * 16 14 13 19 19 C 1.50694 * 109.47152 * 180.02562 * 14 13 12 20 20 C 1.38218 * 120.01812 * 339.99581 * 19 14 13 21 21 C 1.38218 * 120.03184 * 179.97438 * 20 19 14 22 22 C 1.38266 * 120.04752 * 359.97438 * 21 20 19 23 23 C 1.38173 * 120.02911 * 359.97438 * 22 21 20 24 24 C 1.38449 * 120.01059 * 160.22905 * 19 14 13 25 25 F 1.35096 * 120.02773 * 0.04343 * 24 19 14 26 26 C 1.46957 * 110.87830 * 59.32298 * 13 12 11 27 27 C 1.46960 * 110.99870 * 58.98284 * 10 9 7 28 28 H 0.96999 * 119.99685 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47332 * 65.00817 * 9 7 2 30 30 H 1.09002 * 109.47223 * 305.00781 * 9 7 2 31 31 H 1.08997 * 109.48663 * 63.21896 * 11 10 9 32 32 H 1.08995 * 109.48496 * 303.15397 * 11 10 9 33 33 H 1.09000 * 109.48467 * 181.63080 * 12 11 10 34 34 H 1.09001 * 109.51280 * 61.57564 * 12 11 10 35 35 H 0.96698 * 117.00195 * 180.02562 * 18 16 14 36 36 H 1.08005 * 119.98202 * 359.95548 * 20 19 14 37 37 H 1.08001 * 119.97729 * 179.97438 * 21 20 19 38 38 H 1.08006 * 119.98610 * 180.02562 * 22 21 20 39 39 H 1.08000 * 120.01747 * 180.02562 * 23 22 21 40 40 H 1.08997 * 109.48663 * 60.64976 * 26 13 12 41 41 H 1.09004 * 109.49015 * 180.71695 * 26 13 12 42 42 H 1.09003 * 109.48402 * 296.77911 * 27 10 9 43 43 H 1.08995 * 109.48959 * 56.81779 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2011 -3.6130 0.1220 11 6 3.0790 -3.6872 -1.0542 12 6 3.9975 -4.9046 -0.9258 13 7 4.7855 -4.7925 0.3096 14 6 5.7355 -5.9063 0.4311 15 1 5.1892 -6.8494 0.4493 16 6 6.6772 -5.8940 -0.7454 17 8 6.5684 -5.0443 -1.5974 18 8 7.6374 -6.8264 -0.8462 19 6 6.5231 -5.7578 1.7072 20 6 6.6032 -4.5270 2.3311 21 6 7.3251 -4.3906 3.5018 22 6 7.9674 -5.4851 4.0507 23 6 7.8879 -6.7167 3.4295 24 6 7.1707 -6.8531 2.2527 25 9 7.0978 -8.0554 1.6409 26 6 3.9075 -4.7183 1.4858 27 6 2.9889 -3.5009 1.3575 28 1 -0.4849 0.8401 0.0004 29 1 0.6937 -2.5969 -0.9311 30 1 0.5585 -2.5188 0.8420 31 1 3.6821 -2.7813 -1.1154 32 1 2.4727 -3.7824 -1.9550 33 1 4.6694 -4.9451 -1.7832 34 1 3.3957 -5.8128 -0.8922 35 1 8.2175 -6.7775 -1.6183 36 1 6.1018 -3.6714 1.9033 37 1 7.3875 -3.4284 3.9883 38 1 8.5309 -5.3774 4.9658 39 1 8.3894 -7.5716 3.8586 40 1 3.3044 -5.6242 1.5470 41 1 4.5138 -4.6230 2.3867 42 1 3.5910 -2.5929 1.3236 43 1 2.3170 -3.4599 2.2148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601067937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:03 Heat of formation + Delta-G solvation = -97.182278 kcal Electronic energy + Delta-G solvation = -28254.801311 eV Core-core repulsion = 24214.325183 eV Total energy + Delta-G solvation = -4040.476127 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.84982 -41.95175 -40.26076 -39.54145 -37.37444 -36.68712 -34.63890 -32.89049 -32.01804 -31.31782 -29.88360 -28.19725 -26.19156 -24.66974 -23.80707 -23.57694 -23.22013 -21.75923 -20.74442 -19.17617 -18.65940 -18.43383 -17.87387 -17.52370 -17.46902 -16.83578 -16.45115 -16.35791 -16.17042 -15.87615 -15.62410 -15.37752 -15.01779 -14.95585 -14.80436 -14.17541 -14.04173 -13.88179 -13.70463 -13.47399 -13.10767 -12.94170 -12.80443 -12.63906 -12.54219 -12.43887 -12.35239 -12.19582 -12.02996 -11.95836 -11.76343 -11.43987 -11.16047 -10.60537 -9.86712 -9.66578 -9.50613 -9.04008 -8.15364 -6.34143 0.08268 0.26315 1.07653 1.35442 1.37450 1.49411 1.79527 2.37799 2.55525 2.81437 3.09708 3.30847 3.33387 3.35934 3.84615 3.85673 3.97437 4.16603 4.21414 4.21988 4.35796 4.42171 4.44191 4.47089 4.50419 4.67280 4.84963 4.88667 5.00383 5.08926 5.13898 5.15915 5.21112 5.24489 5.33522 5.38095 5.50015 5.55318 5.72301 5.82948 5.87588 5.94826 6.04706 6.25520 6.49131 6.86187 6.93241 7.37169 8.87513 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016472 B = 0.003735 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.463368 B = 7495.603129 C = 8120.498704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.552 4.552 8 H 0.054 0.946 9 C 0.200 3.800 10 N -0.542 5.542 11 C 0.073 3.927 12 C 0.059 3.941 13 N -0.525 5.525 14 C 0.140 3.860 15 H 0.094 0.906 16 C 0.493 3.507 17 O -0.520 6.520 18 O -0.502 6.502 19 C -0.138 4.138 20 C -0.077 4.077 21 C -0.135 4.135 22 C -0.074 4.074 23 C -0.157 4.157 24 C 0.107 3.893 25 F -0.138 7.138 26 C 0.064 3.936 27 C 0.069 3.931 28 H 0.265 0.735 29 H 0.002 0.998 30 H 0.011 0.989 31 H 0.021 0.979 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.042 0.958 35 H 0.429 0.571 36 H 0.132 0.868 37 H 0.150 0.850 38 H 0.167 0.833 39 H 0.160 0.840 40 H 0.044 0.956 41 H 0.104 0.896 42 H 0.029 0.971 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.154 -15.782 7.584 25.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.591 4.591 8 H 0.073 0.927 9 C 0.073 3.927 10 N -0.266 5.266 11 C -0.056 4.056 12 C -0.069 4.069 13 N -0.252 5.252 14 C 0.030 3.970 15 H 0.111 0.889 16 C 0.335 3.665 17 O -0.408 6.408 18 O -0.315 6.315 19 C -0.140 4.140 20 C -0.095 4.095 21 C -0.153 4.153 22 C -0.091 4.091 23 C -0.176 4.176 24 C 0.088 3.912 25 F -0.116 7.116 26 C -0.063 4.063 27 C -0.059 4.059 28 H 0.074 0.926 29 H 0.020 0.980 30 H 0.029 0.971 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.061 0.939 35 H 0.291 0.709 36 H 0.150 0.850 37 H 0.168 0.832 38 H 0.184 0.816 39 H 0.177 0.823 40 H 0.063 0.937 41 H 0.122 0.878 42 H 0.047 0.953 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.713 -15.534 7.644 25.493 hybrid contribution 0.054 1.043 -1.140 1.546 sum 18.767 -14.491 6.503 24.586 Atomic orbital electron populations 1.70068 1.07492 1.27769 1.51261 1.25772 0.95563 1.02693 0.94536 0.85542 0.78873 0.79584 0.77892 1.19453 1.20533 1.20010 1.21970 0.93279 0.92897 1.50986 0.92741 1.19401 0.91195 0.86703 0.95358 1.62660 1.17439 1.44099 1.02408 1.21829 0.93664 0.96426 0.93682 1.22402 0.94727 0.96951 0.92808 1.61813 1.18379 1.41218 1.03754 1.19737 0.91916 0.95876 0.89446 0.88881 1.22988 0.79856 0.77760 0.85926 1.90690 1.70376 1.37639 1.42138 1.84503 1.43267 1.51814 1.51963 1.19318 1.03104 0.94674 0.96880 1.21186 0.96801 0.96160 0.95360 1.21549 0.97314 1.00844 0.95566 1.21474 0.96908 0.90747 1.00003 1.21425 1.01071 1.00781 0.94321 1.17646 1.00007 0.79938 0.93646 1.91498 1.94678 1.42785 1.82653 1.22411 0.93430 0.97522 0.92897 1.21911 0.94759 0.96373 0.92880 0.92610 0.98001 0.97057 0.96023 0.91735 0.88562 0.93949 0.70860 0.85033 0.83242 0.81587 0.82278 0.93749 0.87800 0.95268 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.54 13.29 21.45 0.28 -55.26 16 2 C 0.01 0.78 5.46 84.65 0.46 1.24 16 3 Si 0.96 44.69 29.54 68.60 2.03 46.71 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.55 -31.18 7.66 25.60 0.20 -30.98 16 8 H 0.05 3.09 5.82 -2.91 -0.02 3.08 16 9 C 0.20 10.75 5.14 85.56 0.44 11.19 16 10 N -0.54 -24.03 4.92 -900.28 -4.43 -28.45 16 11 C 0.07 3.03 5.32 86.31 0.46 3.49 16 12 C 0.06 1.99 5.21 86.31 0.45 2.44 16 13 N -0.53 -16.28 3.54 -879.29 -3.11 -19.39 16 14 C 0.14 3.61 1.92 43.42 0.08 3.70 16 15 H 0.09 2.27 7.95 -2.38 -0.02 2.26 16 16 C 0.49 12.81 7.32 71.24 0.52 13.33 16 17 O -0.52 -16.81 14.59 21.97 0.32 -16.49 16 18 O -0.50 -9.52 12.36 -51.37 -0.63 -10.15 16 19 C -0.14 -3.15 4.41 -19.82 -0.09 -3.24 16 20 C -0.08 -1.70 7.25 22.26 0.16 -1.54 16 21 C -0.13 -2.18 10.04 22.27 0.22 -1.95 16 22 C -0.07 -0.91 10.04 22.26 0.22 -0.69 16 23 C -0.16 -2.29 10.03 22.31 0.22 -2.07 16 24 C 0.11 2.15 6.97 22.38 0.16 2.31 16 25 F -0.14 -2.97 15.93 44.97 0.72 -2.25 16 26 C 0.06 1.95 4.72 86.31 0.41 2.36 16 27 C 0.07 2.71 5.24 86.31 0.45 3.16 16 28 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 29 H 0.00 0.11 8.12 -2.39 -0.02 0.09 16 30 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.02 1.02 6.78 -2.39 -0.02 1.00 16 32 H 0.06 2.69 8.12 -2.39 -0.02 2.67 16 33 H 0.10 3.31 5.30 -2.39 -0.01 3.30 16 34 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.43 4.24 9.10 -74.06 -0.67 3.57 16 36 H 0.13 3.47 6.45 -2.91 -0.02 3.45 16 37 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 39 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 40 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.10 2.72 4.97 -2.38 -0.01 2.70 16 42 H 0.03 1.27 6.62 -2.39 -0.02 1.25 16 43 H 0.07 2.73 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -70.21 346.50 -0.08 -70.29 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.38 Total: 12.26 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 4.37 Total: 2.74 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -7.25 Total: -103.11 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.31 Total: -26.65 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.72 Total: -2.25 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -70.21 -0.08 -70.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.893 kcal (2) G-P(sol) polarization free energy of solvation -70.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds