Wall clock time and date at job start Tue Mar 31 2020 13:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00450 * 2 1 4 4 H 1.48502 * 109.46901 * 272.94524 * 3 2 1 5 5 H 1.48501 * 109.47025 * 32.94312 * 3 2 1 6 6 H 1.48503 * 109.47068 * 152.94346 * 3 2 1 7 7 C 1.38817 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99814 * 339.34608 * 7 2 1 9 9 N 1.36932 * 120.00312 * 159.34353 * 7 2 1 10 10 C 1.46930 * 120.62778 * 332.63309 * 9 7 2 11 11 C 1.53191 * 108.77642 * 233.58562 * 10 9 7 12 12 C 1.53046 * 109.31227 * 305.36883 * 11 10 9 13 13 N 1.46896 * 109.46124 * 181.38724 * 12 11 10 14 14 C 1.46900 * 111.00193 * 154.97065 * 13 12 11 15 15 C 1.50700 * 109.47118 * 179.97438 * 14 13 12 16 16 C 1.38474 * 119.82468 * 269.72405 * 15 14 13 17 17 C 1.37845 * 120.22250 * 179.76258 * 16 15 14 18 18 C 1.39712 * 119.87329 * 0.49358 * 17 16 15 19 19 C 1.47557 * 120.17450 * 179.74394 * 18 17 16 20 20 O 1.21493 * 120.00709 * 180.02562 * 19 18 17 21 21 O 1.34735 * 119.99775 * 0.02562 * 19 18 17 22 22 C 1.39879 * 119.65618 * 359.76051 * 18 17 16 23 23 F 1.35105 * 120.11348 * 179.97438 * 22 18 17 24 24 C 1.38209 * 119.82494 * 89.99665 * 15 14 13 25 25 C 1.53038 * 109.52897 * 61.36837 * 12 11 10 26 26 C 1.46927 * 120.63419 * 152.60867 * 9 7 2 27 27 H 0.96996 * 119.99768 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.58701 * 113.79761 * 10 9 7 29 29 H 1.08998 * 109.70962 * 353.44350 * 10 9 7 30 30 H 1.08997 * 109.50287 * 185.41580 * 11 10 9 31 31 H 1.08994 * 109.50032 * 65.31298 * 11 10 9 32 32 H 1.09001 * 109.45845 * 301.35793 * 12 11 10 33 33 H 1.00904 * 111.00016 * 278.92363 * 13 12 11 34 34 H 1.08998 * 109.46847 * 299.99640 * 14 13 12 35 35 H 1.09003 * 109.47037 * 59.99710 * 14 13 12 36 36 H 1.07999 * 119.88798 * 0.02562 * 16 15 14 37 37 H 1.08003 * 120.05883 * 180.23143 * 17 16 15 38 38 H 0.96702 * 116.99931 * 180.02562 * 21 19 18 39 39 H 1.07995 * 119.93766 * 359.97438 * 24 15 14 40 40 H 1.09001 * 109.49222 * 58.58390 * 25 12 11 41 41 H 1.09005 * 109.49613 * 178.67937 * 25 12 11 42 42 H 1.08998 * 109.58791 * 246.20613 * 26 9 7 43 43 H 1.08996 * 109.58029 * 6.48599 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4355 2.0823 -1.3983 5 1 1.4803 2.6339 0.7614 6 1 3.5776 1.4228 0.6369 7 6 2.0102 -1.2022 0.0005 8 1 1.5222 -2.1073 0.3309 9 7 3.3135 -1.2406 -0.4178 10 6 3.8172 -0.2597 -1.3888 11 6 4.4621 -1.0100 -2.5584 12 6 5.5288 -1.9662 -2.0198 13 7 6.1724 -2.6633 -3.1413 14 6 7.5255 -3.1058 -2.7793 15 6 8.1524 -3.8156 -3.9516 16 6 7.9971 -5.1845 -4.0912 17 6 8.5628 -5.8413 -5.1630 18 6 9.3039 -5.1246 -6.1059 19 6 9.9171 -5.8219 -7.2527 20 8 10.5614 -5.1958 -8.0707 21 8 9.7626 -7.1530 -7.3928 22 6 9.4619 -3.7428 -5.9571 23 9 10.1771 -3.0408 -6.8632 24 6 8.8839 -3.0976 -4.8788 25 6 4.8748 -2.9910 -1.0902 26 6 4.2349 -2.2631 0.0962 27 1 -0.4849 0.8400 0.0004 28 1 4.5597 0.3795 -0.9109 29 1 2.9923 0.3505 -1.7565 30 1 4.9246 -0.2949 -3.2387 31 1 3.6995 -1.5784 -3.0907 32 1 6.2779 -1.4000 -1.4663 33 1 5.6098 -3.4399 -3.4550 34 1 8.1315 -2.2402 -2.5119 35 1 7.4700 -3.7868 -1.9300 36 1 7.4273 -5.7388 -3.3601 37 1 8.4369 -6.9085 -5.2712 38 1 10.1831 -7.5654 -8.1598 39 1 9.0040 -2.0308 -4.7613 40 1 4.1082 -3.5406 -1.6366 41 1 5.6311 -3.6861 -0.7254 42 1 5.0114 -1.7874 0.6953 43 1 3.6843 -2.9753 0.7107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:33 Heat of formation + Delta-G solvation = -84.368403 kcal Electronic energy + Delta-G solvation = -26399.057581 eV Core-core repulsion = 22359.137105 eV Total energy + Delta-G solvation = -4039.920476 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.24545 -40.69708 -39.44539 -38.29521 -36.47927 -35.55417 -33.00476 -31.68146 -31.06957 -30.43405 -29.68512 -26.65065 -24.41799 -23.50443 -23.14804 -22.68592 -21.49834 -21.37822 -19.65977 -18.60080 -17.97017 -17.19085 -16.90216 -16.61180 -16.37977 -15.64505 -15.55325 -15.40654 -14.91509 -14.70523 -14.27376 -14.22392 -14.04591 -13.72687 -13.55199 -13.16231 -12.94140 -12.79459 -12.39185 -12.35952 -12.30291 -11.98257 -11.84311 -11.79514 -11.51415 -10.95708 -10.89689 -10.84976 -10.61655 -10.22279 -10.10212 -9.75804 -9.52179 -9.46788 -9.22401 -8.64541 -8.36349 -7.00490 -5.96639 -3.32532 0.08242 0.73564 2.05580 2.49867 3.11447 3.31556 3.47497 3.50026 3.67139 4.06961 4.18817 4.44188 4.50769 4.51728 4.75532 4.81713 4.92975 5.01343 5.14056 5.20476 5.27883 5.42508 5.42954 5.53526 5.57233 5.62722 5.66515 5.80244 6.00167 6.01350 6.02899 6.10523 6.18440 6.25642 6.30224 6.44324 6.56491 6.62248 6.68134 6.86466 7.06727 7.34628 7.43856 7.94532 8.30788 8.92258 9.70409 10.07919 11.19363 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029497 B = 0.002259 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.028164 B =12393.811280 C =12801.599783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.884 3.116 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.271 1.271 7 C -0.261 4.261 8 H 0.084 0.916 9 N -0.606 5.606 10 C 0.125 3.875 11 C -0.119 4.119 12 C 0.095 3.905 13 N -0.681 5.681 14 C 0.088 3.912 15 C -0.008 4.008 16 C -0.140 4.140 17 C -0.031 4.031 18 C -0.174 4.174 19 C 0.527 3.473 20 O -0.503 6.503 21 O -0.511 6.511 22 C 0.166 3.834 23 F -0.115 7.115 24 C -0.146 4.146 25 C -0.162 4.162 26 C 0.152 3.848 27 H 0.263 0.737 28 H 0.024 0.976 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.342 0.658 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.139 0.861 37 H 0.148 0.852 38 H 0.416 0.584 39 H 0.149 0.851 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.021 0.979 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.511 -13.164 -10.181 26.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.714 3.286 4 H -0.215 1.215 5 H -0.232 1.232 6 H -0.196 1.196 7 C -0.389 4.389 8 H 0.102 0.898 9 N -0.330 5.330 10 C -0.001 4.001 11 C -0.159 4.159 12 C -0.014 4.014 13 N -0.311 5.311 14 C -0.040 4.040 15 C -0.009 4.009 16 C -0.159 4.159 17 C -0.049 4.049 18 C -0.176 4.176 19 C 0.371 3.629 20 O -0.392 6.392 21 O -0.324 6.324 22 C 0.146 3.854 23 F -0.093 7.093 24 C -0.166 4.166 25 C -0.203 4.203 26 C 0.026 3.974 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.161 0.839 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.157 0.843 37 H 0.166 0.834 38 H 0.275 0.725 39 H 0.166 0.834 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.039 0.961 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 20.581 -12.100 -10.375 26.031 hybrid contribution 0.607 0.057 -0.153 0.629 sum 21.189 -12.043 -10.528 26.549 Atomic orbital electron populations 1.69835 1.05749 1.26581 1.52950 1.25283 0.95232 0.97631 0.99468 0.86938 0.79967 0.84630 0.77053 1.21536 1.23187 1.19628 1.18907 0.84996 0.94734 1.40266 0.89797 1.44369 1.08606 1.33392 1.46622 1.21360 0.97238 0.92066 0.89420 1.21995 0.97035 0.98137 0.98683 1.21549 0.95627 0.94810 0.89419 1.60761 1.02071 1.31494 1.36768 1.21042 0.91564 0.98796 0.92632 1.20048 0.92719 0.93227 0.94862 1.21183 1.01597 0.94032 0.99056 1.21328 0.91849 1.00614 0.91156 1.19058 1.08124 0.92123 0.98307 1.20584 0.77444 0.80350 0.84534 1.90966 1.38263 1.67165 1.42812 1.84531 1.73025 1.22829 1.51967 1.17684 0.91943 0.87868 0.87932 1.91609 1.74684 1.78123 1.64918 1.21048 1.00108 1.01679 0.93737 1.22706 0.99669 0.98281 0.99635 1.20825 0.92383 0.91371 0.92854 0.92756 0.95844 0.90792 0.92147 0.91734 0.90936 0.83937 0.89535 0.93267 0.84339 0.83447 0.72484 0.83352 0.91640 0.93099 0.96122 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.64 13.97 55.49 0.78 -26.87 16 2 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 3 Si 0.88 22.18 24.35 -169.99 -4.14 18.04 16 4 H -0.29 -6.97 6.62 56.52 0.37 -6.60 16 5 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 6 H -0.27 -6.67 6.64 56.52 0.38 -6.29 16 7 C -0.26 -7.16 10.03 -15.06 -0.15 -7.32 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 9 N -0.61 -13.93 2.77 -172.32 -0.48 -14.40 16 10 C 0.13 2.65 4.20 -3.71 -0.02 2.63 16 11 C -0.12 -2.01 5.69 -26.61 -0.15 -2.16 16 12 C 0.09 1.32 2.43 -67.67 -0.16 1.15 16 13 N -0.68 -7.64 6.24 -107.95 -0.67 -8.31 16 14 C 0.09 0.78 5.60 -4.98 -0.03 0.75 16 15 C -0.01 -0.06 5.40 -104.55 -0.56 -0.63 16 16 C -0.14 -1.00 9.67 -39.64 -0.38 -1.38 16 17 C -0.03 -0.23 9.62 -39.17 -0.38 -0.61 16 18 C -0.17 -1.67 5.88 -104.93 -0.62 -2.29 16 19 C 0.53 5.25 8.27 34.53 0.29 5.53 16 20 O -0.50 -6.67 16.13 -19.26 -0.31 -6.98 16 21 O -0.51 -3.24 12.68 -40.59 -0.51 -3.75 16 22 C 0.17 1.76 7.29 -38.94 -0.28 1.47 16 23 F -0.12 -1.46 15.55 2.25 0.04 -1.42 16 24 C -0.15 -1.35 9.66 -39.56 -0.38 -1.73 16 25 C -0.16 -2.34 5.33 -26.61 -0.14 -2.49 16 26 C 0.15 2.82 6.52 -3.71 -0.02 2.79 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.02 0.49 7.08 -51.93 -0.37 0.13 16 29 H 0.07 1.74 4.50 -51.93 -0.23 1.51 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.07 1.01 7.80 -51.93 -0.40 0.61 16 33 H 0.34 3.70 8.47 -39.29 -0.33 3.37 16 34 H 0.09 0.75 7.99 -51.93 -0.42 0.33 16 35 H 0.05 0.40 7.35 -51.93 -0.38 0.01 16 36 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.15 0.78 7.61 -52.48 -0.40 0.39 16 38 H 0.42 0.82 9.11 45.56 0.42 1.24 16 39 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.61 7.42 -51.93 -0.39 0.22 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 LS Contribution 353.17 15.07 5.32 5.32 Total: -1.00 -33.42 353.17 -8.14 -41.56 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.07 Total: 0.51 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -3.09 Total: -3.70 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.38 Total: -49.59 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.83 Total: -10.73 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.14 Total: 18.04 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.42 -8.14 -41.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.808 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds