Wall clock time and date at job start Tue Mar 31 2020 13:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00450 * 2 1 4 4 H 1.48502 * 109.46901 * 272.94524 * 3 2 1 5 5 H 1.48501 * 109.47025 * 32.94312 * 3 2 1 6 6 H 1.48503 * 109.47068 * 152.94346 * 3 2 1 7 7 C 1.38817 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99814 * 339.34608 * 7 2 1 9 9 N 1.36932 * 120.00312 * 159.34353 * 7 2 1 10 10 C 1.46930 * 120.62778 * 332.63309 * 9 7 2 11 11 C 1.53191 * 108.77642 * 233.58562 * 10 9 7 12 12 C 1.53046 * 109.31227 * 305.36883 * 11 10 9 13 13 N 1.46896 * 109.46124 * 181.38724 * 12 11 10 14 14 C 1.46900 * 111.00193 * 154.97065 * 13 12 11 15 15 C 1.50700 * 109.47118 * 179.97438 * 14 13 12 16 16 C 1.38474 * 119.82468 * 269.72405 * 15 14 13 17 17 C 1.37845 * 120.22250 * 179.76258 * 16 15 14 18 18 C 1.39712 * 119.87329 * 0.49358 * 17 16 15 19 19 C 1.47557 * 120.17450 * 179.74394 * 18 17 16 20 20 O 1.21493 * 120.00709 * 180.02562 * 19 18 17 21 21 O 1.34735 * 119.99775 * 0.02562 * 19 18 17 22 22 C 1.39879 * 119.65618 * 359.76051 * 18 17 16 23 23 F 1.35105 * 120.11348 * 179.97438 * 22 18 17 24 24 C 1.38209 * 119.82494 * 89.99665 * 15 14 13 25 25 C 1.53038 * 109.52897 * 61.36837 * 12 11 10 26 26 C 1.46927 * 120.63419 * 152.60867 * 9 7 2 27 27 H 0.96996 * 119.99768 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.58701 * 113.79761 * 10 9 7 29 29 H 1.08998 * 109.70962 * 353.44350 * 10 9 7 30 30 H 1.08997 * 109.50287 * 185.41580 * 11 10 9 31 31 H 1.08994 * 109.50032 * 65.31298 * 11 10 9 32 32 H 1.09001 * 109.45845 * 301.35793 * 12 11 10 33 33 H 1.00904 * 111.00016 * 278.92363 * 13 12 11 34 34 H 1.08998 * 109.46847 * 299.99640 * 14 13 12 35 35 H 1.09003 * 109.47037 * 59.99710 * 14 13 12 36 36 H 1.07999 * 119.88798 * 0.02562 * 16 15 14 37 37 H 1.08003 * 120.05883 * 180.23143 * 17 16 15 38 38 H 0.96702 * 116.99931 * 180.02562 * 21 19 18 39 39 H 1.07995 * 119.93766 * 359.97438 * 24 15 14 40 40 H 1.09001 * 109.49222 * 58.58390 * 25 12 11 41 41 H 1.09005 * 109.49613 * 178.67937 * 25 12 11 42 42 H 1.08998 * 109.58791 * 246.20613 * 26 9 7 43 43 H 1.08996 * 109.58029 * 6.48599 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4355 2.0823 -1.3983 5 1 1.4803 2.6339 0.7614 6 1 3.5776 1.4228 0.6369 7 6 2.0102 -1.2022 0.0005 8 1 1.5222 -2.1073 0.3309 9 7 3.3135 -1.2406 -0.4178 10 6 3.8172 -0.2597 -1.3888 11 6 4.4621 -1.0100 -2.5584 12 6 5.5288 -1.9662 -2.0198 13 7 6.1724 -2.6633 -3.1413 14 6 7.5255 -3.1058 -2.7793 15 6 8.1524 -3.8156 -3.9516 16 6 7.9971 -5.1845 -4.0912 17 6 8.5628 -5.8413 -5.1630 18 6 9.3039 -5.1246 -6.1059 19 6 9.9171 -5.8219 -7.2527 20 8 10.5614 -5.1958 -8.0707 21 8 9.7626 -7.1530 -7.3928 22 6 9.4619 -3.7428 -5.9571 23 9 10.1771 -3.0408 -6.8632 24 6 8.8839 -3.0976 -4.8788 25 6 4.8748 -2.9910 -1.0902 26 6 4.2349 -2.2631 0.0962 27 1 -0.4849 0.8400 0.0004 28 1 4.5597 0.3795 -0.9109 29 1 2.9923 0.3505 -1.7565 30 1 4.9246 -0.2949 -3.2387 31 1 3.6995 -1.5784 -3.0907 32 1 6.2779 -1.4000 -1.4663 33 1 5.6098 -3.4399 -3.4550 34 1 8.1315 -2.2402 -2.5119 35 1 7.4700 -3.7868 -1.9300 36 1 7.4273 -5.7388 -3.3601 37 1 8.4369 -6.9085 -5.2712 38 1 10.1831 -7.5654 -8.1598 39 1 9.0040 -2.0308 -4.7613 40 1 4.1082 -3.5406 -1.6366 41 1 5.6311 -3.6861 -0.7254 42 1 5.0114 -1.7874 0.6953 43 1 3.6843 -2.9753 0.7107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:32 Heat of formation + Delta-G solvation = -108.261131 kcal Electronic energy + Delta-G solvation = -26400.093647 eV Core-core repulsion = 22359.137105 eV Total energy + Delta-G solvation = -4040.956543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.06068 -41.39074 -40.22659 -39.50389 -37.15287 -36.79298 -34.41793 -33.11865 -31.90175 -31.73347 -30.93646 -27.67801 -25.94714 -24.48863 -24.04669 -23.72072 -22.94384 -22.05380 -21.04657 -19.25697 -18.90226 -18.60231 -17.81107 -17.43952 -17.27904 -17.12924 -16.36483 -16.30882 -15.94875 -15.87095 -15.55928 -15.24744 -15.07761 -15.02244 -14.51704 -14.35976 -14.20779 -14.08845 -13.71302 -13.49762 -13.16983 -13.08607 -12.90495 -12.65591 -12.52811 -12.41077 -12.28730 -12.13790 -11.90704 -11.71100 -11.65760 -11.40849 -11.20896 -10.69023 -10.19158 -9.88609 -9.26534 -8.90415 -8.15463 -5.46249 -0.59422 0.11670 1.31618 1.35510 1.41980 1.51041 1.90961 2.42995 2.46209 2.99354 3.07737 3.25960 3.42360 3.53014 3.75677 3.93070 3.94479 4.09884 4.15594 4.22426 4.32729 4.40309 4.47600 4.55777 4.62351 4.74675 4.79908 4.83823 4.93379 4.95905 4.98315 5.04839 5.07232 5.18523 5.20081 5.31342 5.38909 5.47402 5.51537 5.68443 5.88739 6.09296 6.14196 6.49448 6.86525 6.94827 7.65484 8.05485 9.04552 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029497 B = 0.002259 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.028164 B =12393.811280 C =12801.599783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.039 4.039 3 Si 0.947 3.053 4 H -0.276 1.276 5 H -0.313 1.313 6 H -0.259 1.259 7 C -0.246 4.246 8 H 0.051 0.949 9 N -0.621 5.621 10 C 0.120 3.880 11 C -0.111 4.111 12 C 0.107 3.893 13 N -0.683 5.683 14 C 0.091 3.909 15 C -0.009 4.009 16 C -0.129 4.129 17 C -0.022 4.022 18 C -0.187 4.187 19 C 0.530 3.470 20 O -0.546 6.546 21 O -0.497 6.497 22 C 0.137 3.863 23 F -0.136 7.136 24 C -0.148 4.148 25 C -0.148 4.148 26 C 0.144 3.856 27 H 0.260 0.740 28 H 0.033 0.967 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.347 0.653 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.166 0.834 37 H 0.172 0.828 38 H 0.435 0.565 39 H 0.151 0.849 40 H 0.054 0.946 41 H 0.089 0.911 42 H 0.036 0.964 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.808 -14.570 -10.003 28.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.233 4.233 3 Si 0.777 3.223 4 H -0.203 1.203 5 H -0.242 1.242 6 H -0.183 1.183 7 C -0.376 4.376 8 H 0.069 0.931 9 N -0.346 5.346 10 C -0.006 4.006 11 C -0.151 4.151 12 C -0.003 4.003 13 N -0.313 5.313 14 C -0.037 4.037 15 C -0.010 4.010 16 C -0.148 4.148 17 C -0.040 4.040 18 C -0.189 4.189 19 C 0.376 3.624 20 O -0.439 6.439 21 O -0.311 6.311 22 C 0.118 3.882 23 F -0.115 7.115 24 C -0.167 4.167 25 C -0.189 4.189 26 C 0.019 3.981 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.166 0.834 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.184 0.816 37 H 0.189 0.811 38 H 0.298 0.702 39 H 0.169 0.831 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.054 0.946 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 22.940 -13.560 -10.216 28.539 hybrid contribution -0.100 0.306 -0.204 0.381 sum 22.841 -13.254 -10.419 28.389 Atomic orbital electron populations 1.69969 1.07449 1.27137 1.55968 1.25922 0.95839 1.01028 1.00513 0.85899 0.78780 0.80239 0.77425 1.20321 1.24249 1.18338 1.18872 0.86982 0.93405 1.38304 0.93105 1.44519 1.07758 1.34814 1.47524 1.21394 0.96567 0.92109 0.90494 1.21843 0.97547 0.98705 0.96963 1.21302 0.94852 0.94295 0.89848 1.60607 1.03046 1.32147 1.35505 1.21078 0.89910 0.99502 0.93192 1.20065 0.92627 0.93795 0.94473 1.21502 1.00627 0.93579 0.99052 1.21598 0.90522 1.01609 0.90266 1.19253 1.08783 0.91959 0.98922 1.20731 0.76540 0.81102 0.84056 1.90949 1.40298 1.68246 1.44366 1.84485 1.72690 1.20976 1.52992 1.18004 0.93148 0.88574 0.88517 1.91550 1.75451 1.78639 1.65810 1.21135 1.00084 1.01998 0.93530 1.22563 1.00061 0.98457 0.97794 1.21066 0.91888 0.90445 0.94741 0.93062 0.94905 0.93705 0.90745 0.93253 0.89999 0.83425 0.89130 0.91331 0.81602 0.81082 0.70247 0.83093 0.92757 0.89298 0.94629 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.36 13.97 21.65 0.30 -60.06 16 2 C -0.04 -2.25 5.23 84.86 0.44 -1.80 16 3 Si 0.95 46.43 24.35 68.60 1.67 48.10 16 4 H -0.28 -12.88 6.62 99.48 0.66 -12.22 16 5 H -0.31 -15.70 7.11 99.48 0.71 -15.00 16 6 H -0.26 -12.00 6.64 99.48 0.66 -11.34 16 7 C -0.25 -13.75 10.03 84.04 0.84 -12.91 16 8 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 9 N -0.62 -27.99 2.77 -699.08 -1.94 -29.93 16 10 C 0.12 4.86 4.20 86.36 0.36 5.22 16 11 C -0.11 -3.50 5.69 30.67 0.17 -3.32 16 12 C 0.11 2.55 2.43 44.94 0.11 2.66 16 13 N -0.68 -12.52 6.24 -495.44 -3.09 -15.61 16 14 C 0.09 1.19 5.60 85.56 0.48 1.67 16 15 C -0.01 -0.12 5.40 -19.81 -0.11 -0.22 16 16 C -0.13 -1.28 9.67 22.23 0.22 -1.06 16 17 C -0.02 -0.25 9.62 22.53 0.22 -0.03 16 18 C -0.19 -3.30 5.88 -20.07 -0.12 -3.42 16 19 C 0.53 10.04 8.27 70.28 0.58 10.62 16 20 O -0.55 -14.63 16.13 19.86 0.32 -14.31 16 21 O -0.50 -5.20 12.68 -56.45 -0.72 -5.92 16 22 C 0.14 2.82 7.29 22.69 0.17 2.99 16 23 F -0.14 -3.55 15.55 44.97 0.70 -2.85 16 24 C -0.15 -2.46 9.66 22.28 0.22 -2.25 16 25 C -0.15 -3.73 5.33 30.67 0.16 -3.57 16 26 C 0.14 4.99 6.52 86.36 0.56 5.56 16 27 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 28 H 0.03 1.28 7.08 -2.38 -0.02 1.27 16 29 H 0.04 2.07 4.50 -2.39 -0.01 2.06 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 1.88 7.80 -2.39 -0.02 1.86 16 33 H 0.35 6.05 8.47 -89.69 -0.76 5.29 16 34 H 0.09 1.16 7.99 -2.39 -0.02 1.14 16 35 H 0.07 0.69 7.35 -2.39 -0.02 0.67 16 36 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 37 H 0.17 1.08 7.61 -2.91 -0.02 1.05 16 38 H 0.44 0.82 9.11 -74.06 -0.67 0.15 16 39 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 40 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.09 1.62 7.42 -2.38 -0.02 1.60 16 42 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.05 1.89 7.93 -2.39 -0.02 1.87 16 Total: -1.00 -75.71 353.17 1.09 -74.62 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -0.47 Total: 5.82 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 4.31 Total: 0.13 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -4.72 Total: -105.60 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.40 Total: -20.22 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.70 Total: -2.85 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.67 Total: 48.10 kcal Total: -75.71 1.09 -74.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.638 kcal (2) G-P(sol) polarization free energy of solvation -75.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds