Wall clock time and date at job start Tue Mar 31 2020 12:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34130 * 125.66412 * 2 1 4 4 C 1.38203 * 107.52987 * 180.15853 * 3 2 1 5 5 C 1.47077 * 126.46523 * 179.83724 * 4 3 2 6 6 O 1.21542 * 119.99923 * 179.68658 * 5 4 3 7 7 O 1.34779 * 119.99775 * 359.68748 * 5 4 3 8 8 C 1.41876 * 107.07050 * 359.57140 * 4 3 2 9 9 N 1.39774 * 126.07722 * 180.22253 * 8 4 3 10 10 C 1.34779 * 119.99842 * 180.02562 * 9 8 4 11 11 O 1.21584 * 119.99774 * 354.98803 * 10 9 8 12 12 N 1.34777 * 119.99988 * 174.99364 * 10 9 8 13 13 C 1.46921 * 120.63075 * 184.94887 * 12 10 9 14 14 C 1.52757 * 109.00787 * 233.58127 * 13 12 10 15 15 C 1.53041 * 109.38216 * 305.58719 * 14 13 12 16 16 C 1.50698 * 109.45006 * 181.25525 * 15 14 13 17 17 H 1.08005 * 119.99930 * 239.94035 * 16 15 14 18 18 C 1.37876 * 120.00045 * 59.93499 * 16 15 14 19 19 N 1.31516 * 120.00494 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99961 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46834 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47082 * 120.00068 * 20 18 16 23 23 H 1.48497 * 109.47256 * 240.00261 * 20 18 16 24 24 C 1.53032 * 109.53903 * 61.23719 * 15 14 13 25 25 C 1.46928 * 120.63101 * 5.22208 * 12 10 9 26 26 N 1.30905 * 107.83901 * 0.26413 * 8 4 3 27 27 H 1.08997 * 109.47216 * 270.29108 * 1 2 3 28 28 H 1.08998 * 109.47048 * 30.29695 * 1 2 3 29 29 H 1.08997 * 109.46742 * 150.29431 * 1 2 3 30 30 H 1.07997 * 126.23575 * 359.97438 * 3 2 1 31 31 H 0.96696 * 117.00096 * 179.97438 * 7 5 4 32 32 H 0.96998 * 120.00160 * 0.02562 * 9 8 4 33 33 H 1.09005 * 109.58664 * 353.40890 * 13 12 10 34 34 H 1.08991 * 109.59287 * 113.83557 * 13 12 10 35 35 H 1.08997 * 109.56647 * 185.55065 * 14 13 12 36 36 H 1.08999 * 109.39128 * 65.51186 * 14 13 12 37 37 H 1.09002 * 109.45959 * 301.21628 * 15 14 13 38 38 H 0.96992 * 120.00210 * 180.02562 * 19 18 16 39 39 H 1.09003 * 109.50130 * 178.68128 * 24 15 14 40 40 H 1.09003 * 109.52217 * 58.60754 * 24 15 14 41 41 H 1.09004 * 109.58500 * 246.15936 * 25 12 10 42 42 H 1.08998 * 109.58698 * 6.43885 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2470 1.0897 0.0000 4 6 3.5604 0.6596 -0.0036 5 6 4.7593 1.5116 -0.0083 6 8 5.8644 1.0057 -0.0055 7 8 4.6324 2.8534 -0.0158 8 6 3.5341 -0.7589 0.0043 9 7 4.6483 -1.6028 0.0082 10 6 4.4808 -2.9401 0.0152 11 8 3.3645 -3.4124 0.1102 12 7 5.5507 -3.7538 -0.0828 13 6 5.3774 -5.2092 -0.1854 14 6 6.2101 -5.8872 0.9010 15 6 7.6628 -5.4178 0.7947 16 6 8.4918 -6.1091 1.8463 17 1 9.0131 -5.5271 2.5919 18 6 8.5847 -7.4847 1.8567 19 7 7.9502 -8.1936 0.9486 20 14 9.6117 -8.3418 3.1607 21 1 10.2189 -7.3267 4.0586 22 1 8.7459 -9.2499 3.9548 23 1 10.6863 -9.1298 2.5055 24 6 7.7284 -3.9038 1.0077 25 6 6.9128 -3.2028 -0.0832 26 7 2.2808 -1.1367 0.0063 27 1 -0.3633 0.0052 1.0276 28 1 -0.3633 0.8873 -0.5184 29 1 -0.3633 -0.8926 -0.5093 30 1 1.9115 2.1163 -0.0004 31 1 5.4487 3.3716 -0.0182 32 1 5.5422 -1.2260 0.0059 33 1 4.3260 -5.4625 -0.0494 34 1 5.7134 -5.5491 -1.1649 35 1 6.1668 -6.9687 0.7725 36 1 5.8126 -5.6211 1.8805 37 1 8.0522 -5.6627 -0.1935 38 1 8.0153 -9.1613 0.9561 39 1 8.7658 -3.5735 0.9551 40 1 7.3168 -3.6554 1.9860 41 1 7.3766 -3.3758 -1.0543 42 1 6.8739 -2.1322 0.1177 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608099087.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:48 Heat of formation + Delta-G solvation = -28.126923 kcal Electronic energy + Delta-G solvation = -27377.604352 eV Core-core repulsion = 23360.042651 eV Total energy + Delta-G solvation = -4017.561701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.76061 -39.92541 -39.76908 -37.04172 -36.20818 -34.95612 -33.58234 -32.50346 -31.03772 -30.66471 -29.99905 -27.24861 -26.09968 -23.97705 -23.15406 -22.44497 -21.78822 -20.87540 -19.70530 -18.78393 -18.06971 -17.90433 -17.40149 -16.53089 -16.25839 -16.23718 -15.64875 -15.38798 -15.06597 -14.64014 -14.47051 -13.99445 -13.67379 -13.37666 -13.21199 -13.03462 -12.96554 -12.74599 -12.59003 -12.23992 -11.79909 -11.73011 -11.13582 -11.07702 -10.95757 -10.84910 -10.70239 -10.59282 -10.38237 -10.02751 -9.72330 -9.52384 -9.18322 -9.14577 -8.87018 -8.54563 -8.33192 -7.89694 -5.98389 -4.04656 1.07868 1.93423 1.98220 2.71520 2.94050 3.11655 3.30694 3.39056 3.42764 3.66579 3.99212 4.17380 4.42395 4.44664 4.80639 4.88019 5.07032 5.14154 5.31447 5.34486 5.43006 5.55813 5.80881 5.87603 6.09114 6.26045 6.32096 6.47114 6.50344 6.51554 6.63472 6.69982 6.82118 6.97597 7.01644 7.25661 7.37562 7.60264 7.74755 7.78333 7.97408 8.09151 8.21804 8.44455 8.84475 8.98812 9.60255 11.07147 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020958 B = 0.002939 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.711133 B = 9523.434469 C =10444.384216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.354 5.354 3 C 0.145 3.855 4 C -0.312 4.312 5 C 0.565 3.435 6 O -0.529 6.529 7 O -0.517 6.517 8 C 0.383 3.617 9 N -0.648 5.648 10 C 0.697 3.303 11 O -0.556 6.556 12 N -0.610 5.610 13 C 0.127 3.873 14 C -0.124 4.124 15 C 0.049 3.951 16 C -0.511 4.511 17 H 0.055 0.945 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.123 4.123 25 C 0.108 3.892 26 N -0.278 5.278 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.194 0.806 31 H 0.413 0.587 32 H 0.425 0.575 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.038 0.962 37 H 0.028 0.972 38 H 0.260 0.740 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.481 22.494 -4.281 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.130 5.130 3 C -0.010 4.010 4 C -0.328 4.328 5 C 0.411 3.589 6 O -0.419 6.419 7 O -0.329 6.329 8 C 0.122 3.878 9 N -0.305 5.305 10 C 0.398 3.602 11 O -0.429 6.429 12 N -0.347 5.347 13 C 0.005 3.995 14 C -0.163 4.163 15 C 0.030 3.970 16 C -0.550 4.550 17 H 0.073 0.927 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.718 3.282 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.162 4.162 25 C -0.015 4.015 26 N -0.107 5.107 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.211 0.789 31 H 0.272 0.728 32 H 0.268 0.732 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.264 20.455 -4.281 25.302 hybrid contribution 2.137 0.775 0.763 2.398 sum -12.127 21.230 -3.518 24.701 Atomic orbital electron populations 1.22038 0.72875 1.05189 1.04176 1.48393 1.07504 1.03805 1.53339 1.23145 0.89375 0.94254 0.94275 1.18867 0.91672 0.90651 1.31569 1.19544 0.87648 0.80189 0.71560 1.90851 1.27738 1.74890 1.48394 1.84523 1.42661 1.19290 1.86426 1.18802 0.87691 0.86719 0.94556 1.42562 1.07382 1.04582 1.76009 1.15908 0.85363 0.80268 0.78642 1.90968 1.22612 1.73822 1.55533 1.47489 1.04332 1.07657 1.75186 1.21753 1.01529 0.75853 1.00341 1.21962 0.96228 1.03026 0.95077 1.18636 0.92546 0.88241 0.97537 1.21225 1.28880 0.91414 1.13444 0.92669 1.24966 0.95675 0.97594 0.95780 1.69850 1.42664 1.06042 1.34368 0.86564 0.80153 0.79601 0.81832 1.19865 1.21086 1.21086 1.22012 0.98038 0.99552 0.96555 1.21829 0.82400 0.96387 1.00894 1.78220 0.98974 1.03204 1.30323 0.89923 0.88885 0.88429 0.78928 0.72804 0.73159 0.90368 0.92223 0.87675 0.94276 0.95350 0.93028 0.91895 0.92815 0.91446 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.52 11.43 59.85 0.68 1.21 16 2 N -0.35 -3.70 3.97 -67.59 -0.27 -3.97 16 3 C 0.14 1.26 11.32 -16.56 -0.19 1.07 16 4 C -0.31 -3.84 6.14 -104.93 -0.64 -4.49 16 5 C 0.57 6.45 8.32 34.32 0.29 6.73 16 6 O -0.53 -7.48 15.99 -19.30 -0.31 -7.78 16 7 O -0.52 -3.73 13.26 -40.71 -0.54 -4.27 16 8 C 0.38 6.17 7.78 -154.46 -1.20 4.97 16 9 N -0.65 -11.20 5.33 -15.30 -0.08 -11.28 16 10 C 0.70 14.00 8.26 -86.92 -0.72 13.28 16 11 O -0.56 -12.73 14.49 5.29 0.08 -12.66 16 12 N -0.61 -11.94 2.98 -178.77 -0.53 -12.47 16 13 C 0.13 2.65 6.41 -3.94 -0.03 2.63 16 14 C -0.12 -2.96 5.14 -26.83 -0.14 -3.09 16 15 C 0.05 1.19 2.07 -91.73 -0.19 1.00 16 16 C -0.51 -13.85 8.56 -34.44 -0.29 -14.15 16 17 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 18 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 19 N -0.89 -25.06 11.31 55.43 0.63 -24.43 16 20 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C -0.12 -2.50 5.30 -26.62 -0.14 -2.64 16 25 C 0.11 1.90 6.39 -3.71 -0.02 1.87 16 26 N -0.28 -4.53 10.73 31.62 0.34 -4.19 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.19 0.73 8.06 -52.49 -0.42 0.31 16 31 H 0.41 1.25 9.11 45.56 0.42 1.66 16 32 H 0.43 6.81 4.44 -40.82 -0.18 6.63 16 33 H 0.08 1.67 7.00 -51.93 -0.36 1.30 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.11 2.76 6.03 -51.93 -0.31 2.45 16 36 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 0.95 5.64 -51.93 -0.29 0.66 16 LS Contribution 350.94 15.07 5.29 5.29 Total: -1.00 -36.42 350.94 -7.61 -44.03 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.50 Total: 5.54 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: -2.69 Total: 9.96 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.08 Total: -56.35 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.77 Total: -24.71 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.42 -7.61 -44.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608099087.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.902 kcal (2) G-P(sol) polarization free energy of solvation -36.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds