Wall clock time and date at job start Tue Mar 31 2020 12:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35824 * 125.65256 * 2 1 4 4 C 1.35926 * 108.79812 * 180.02562 * 3 2 1 5 5 N 1.40780 * 126.11798 * 179.97438 * 4 3 2 6 6 C 1.34782 * 119.99896 * 180.02562 * 5 4 3 7 7 O 1.21599 * 119.99781 * 354.88376 * 6 5 4 8 8 N 1.34770 * 119.99649 * 174.88526 * 6 5 4 9 9 C 1.46966 * 120.59495 * 185.16415 * 8 6 5 10 10 C 1.53363 * 108.63988 * 235.25177 * 9 8 6 11 11 N 1.46967 * 108.63557 * 310.57562 * 10 9 8 12 12 C 1.36932 * 120.59221 * 235.20308 * 11 10 9 13 13 H 1.07997 * 120.00078 * 148.29422 * 12 11 10 14 14 C 1.38818 * 120.00094 * 328.01821 * 12 11 10 15 15 N 1.31614 * 119.99835 * 350.29652 * 14 12 11 16 16 Si 1.86795 * 119.99785 * 170.29624 * 14 12 11 17 17 H 1.48496 * 109.47499 * 90.00101 * 16 14 12 18 18 H 1.48498 * 109.47134 * 209.99909 * 16 14 12 19 19 H 1.48503 * 109.47346 * 329.99699 * 16 14 12 20 20 C 1.46964 * 118.81020 * 55.47839 * 11 10 9 21 21 C 1.46964 * 120.60008 * 5.19234 * 8 6 5 22 22 C 1.40145 * 107.76646 * 0.24383 * 4 3 2 23 23 C 1.37654 * 125.65077 * 180.02562 * 2 1 3 24 24 C 1.46471 * 126.18463 * 359.97438 * 23 2 1 25 25 O 1.21626 * 120.00132 * 180.02562 * 24 23 2 26 26 O 1.34905 * 119.99746 * 359.97438 * 24 23 2 27 27 H 1.08999 * 109.47387 * 89.97387 * 1 2 3 28 28 H 1.08999 * 109.46778 * 209.97226 * 1 2 3 29 29 H 1.09002 * 109.47063 * 329.97185 * 1 2 3 30 30 H 1.08003 * 125.60135 * 0.02913 * 3 2 1 31 31 H 0.96998 * 120.00044 * 0.02562 * 5 4 3 32 32 H 1.09006 * 109.60942 * 115.50382 * 9 8 6 33 33 H 1.09002 * 109.60626 * 354.99916 * 9 8 6 34 34 H 1.09004 * 109.61566 * 190.82954 * 10 9 8 35 35 H 1.09008 * 109.75039 * 70.40422 * 10 9 8 36 36 H 0.97002 * 120.00072 * 180.02562 * 15 14 12 37 37 H 1.08993 * 109.61130 * 64.26577 * 20 11 10 38 38 H 1.09005 * 109.60683 * 184.78114 * 20 11 10 39 39 H 1.09000 * 109.61360 * 244.49439 * 21 8 6 40 40 H 1.09003 * 109.60471 * 4.83148 * 21 8 6 41 41 H 1.08003 * 126.44450 * 179.75213 * 22 4 3 42 42 H 0.96695 * 116.99344 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2567 1.1037 0.0000 4 6 3.5576 0.7096 -0.0006 5 7 4.6815 1.5573 -0.0013 6 6 5.9224 1.0313 -0.0023 7 8 6.0728 -0.1717 0.0913 8 7 6.9964 1.8386 -0.1070 9 6 8.3483 1.2739 -0.2232 10 6 9.2226 1.8620 0.8912 11 7 9.0630 3.3229 0.8917 12 6 10.1544 4.1432 0.7863 13 1 10.0657 5.0992 0.2917 14 6 11.3735 3.7485 1.3201 15 7 11.4409 2.6828 2.0895 16 14 12.9183 4.7299 0.9464 17 1 13.0931 5.7881 1.9734 18 1 14.0957 3.8250 0.9629 19 1 12.7945 5.3567 -0.3941 20 6 7.7118 3.8878 1.0136 21 6 6.8370 3.2996 -0.1065 22 6 3.5799 -0.6917 -0.0066 23 6 2.2674 -1.1186 -0.0005 24 6 1.8107 -2.5103 -0.0006 25 8 2.6220 -3.4165 -0.0006 26 8 0.4904 -2.7869 0.0004 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8897 0.5143 30 1 1.9096 2.1264 0.0004 31 1 4.5628 2.5200 -0.0010 32 1 8.7705 1.5323 -1.1944 33 1 8.3021 0.1899 -0.1184 34 1 10.2670 1.6081 0.7094 35 1 8.9108 1.4595 1.8551 36 1 12.2926 2.4072 2.4629 37 1 7.2921 3.6260 1.9848 38 1 7.7581 4.9721 0.9125 39 1 7.1516 3.7023 -1.0693 40 1 5.7921 3.5534 0.0723 41 1 4.4588 -1.3194 -0.0123 42 1 0.2375 -3.7202 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608118304.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:25 Heat of formation + Delta-G solvation = -44.330580 kcal Electronic energy + Delta-G solvation = -27096.672177 eV Core-core repulsion = 23078.407833 eV Total energy + Delta-G solvation = -4018.264344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.63222 -41.29665 -40.55353 -38.55534 -37.16211 -36.02287 -35.62776 -33.26312 -32.79070 -31.76782 -30.36595 -28.65834 -27.03050 -25.65586 -25.02058 -24.38706 -22.75695 -21.56033 -21.43987 -20.27300 -19.64293 -19.02735 -18.50105 -18.00834 -17.09180 -16.95809 -16.76836 -16.50222 -16.37347 -15.76094 -15.59492 -15.44841 -15.22333 -15.07476 -14.95430 -14.67270 -14.24699 -14.21576 -13.43257 -13.35572 -13.33464 -13.03331 -12.97499 -12.67788 -12.65666 -12.43729 -12.27835 -11.99771 -11.96858 -11.87074 -11.67122 -11.62839 -11.00914 -10.59702 -9.86181 -9.54140 -8.72034 -8.51536 -7.84582 -5.40398 0.12356 1.42078 1.44401 1.49842 1.51411 1.60559 1.78394 1.98683 2.12973 2.41553 2.52224 2.94912 3.31317 3.62621 3.86356 4.11316 4.15592 4.24634 4.27732 4.33226 4.45281 4.52468 4.55936 4.67812 4.73666 4.82465 4.85827 4.92300 5.01805 5.09616 5.22416 5.28323 5.44096 5.52098 5.64234 5.66136 5.73161 5.91120 6.09101 6.23597 6.40477 6.91948 6.98198 7.12974 7.54860 7.80993 8.36087 9.19667 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.033383 B = 0.002496 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.541264 B =11216.955669 C =11844.051623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.403 5.403 3 C 0.034 3.966 4 C 0.048 3.952 5 N -0.647 5.647 6 C 0.699 3.301 7 O -0.622 6.622 8 N -0.616 5.616 9 C 0.121 3.879 10 C 0.171 3.829 11 N -0.609 5.609 12 C -0.260 4.260 13 H 0.077 0.923 14 C -0.052 4.052 15 N -0.940 5.940 16 Si 0.973 3.027 17 H -0.285 1.285 18 H -0.298 1.298 19 H -0.265 1.265 20 C 0.126 3.874 21 C 0.104 3.896 22 C -0.131 4.131 23 C -0.061 4.061 24 C 0.563 3.437 25 O -0.550 6.550 26 O -0.499 6.499 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.228 0.772 31 H 0.422 0.578 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.071 0.929 35 H -0.012 1.012 36 H 0.250 0.750 37 H 0.013 0.987 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.148 0.241 -6.552 28.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.078 5.078 3 C -0.106 4.106 4 C -0.051 4.051 5 N -0.298 5.298 6 C 0.401 3.599 7 O -0.503 6.503 8 N -0.351 5.351 9 C -0.004 4.004 10 C 0.044 3.956 11 N -0.333 5.333 12 C -0.390 4.390 13 H 0.095 0.905 14 C -0.248 4.248 15 N -0.586 5.586 16 Si 0.801 3.199 17 H -0.212 1.212 18 H -0.224 1.224 19 H -0.190 1.190 20 C 0.000 4.000 21 C -0.020 4.020 22 C -0.160 4.160 23 C -0.172 4.172 24 C 0.409 3.591 25 O -0.442 6.442 26 O -0.314 6.314 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.137 0.863 30 H 0.244 0.756 31 H 0.263 0.737 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.006 0.994 36 H 0.059 0.941 37 H 0.031 0.969 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.128 0.872 41 H 0.149 0.851 42 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -27.961 -0.505 -6.435 28.696 hybrid contribution 1.492 -0.288 0.333 1.556 sum -26.469 -0.793 -6.102 27.175 Atomic orbital electron populations 1.22640 0.72596 1.06839 1.05498 1.44022 1.08139 1.03509 1.52150 1.21971 0.86719 0.93683 1.08213 1.16859 0.86933 0.89522 1.11803 1.41813 1.01447 1.09644 1.76927 1.15960 0.81112 0.84712 0.78117 1.90820 1.85326 1.14941 1.59199 1.47224 1.05123 1.07096 1.75695 1.22010 0.80731 0.97974 0.99678 1.20896 0.98308 0.83703 0.92695 1.44203 1.02357 1.01292 1.85414 1.19573 0.88678 1.01472 1.29322 0.90522 1.26024 1.02278 0.99298 0.97163 1.70136 1.25019 1.28019 1.35429 0.85198 0.78801 0.77621 0.78326 1.21155 1.22441 1.18959 1.21582 0.85214 0.98133 0.95098 1.22400 1.00924 0.78122 1.00576 1.21516 0.95018 0.94890 1.04593 1.19096 0.90093 0.85152 1.22866 1.19387 0.80698 0.87342 0.71628 1.90972 1.56537 1.47708 1.48965 1.84544 1.23417 1.37854 1.85586 0.88831 0.88264 0.86263 0.75569 0.73689 0.91421 0.91034 0.91045 0.99402 0.94110 0.96930 0.89750 0.90200 0.87212 0.85056 0.70364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 10.56 127.77 1.35 1.72 16 2 N -0.40 -6.41 3.17 -533.69 -1.69 -8.10 16 3 C 0.03 0.51 11.41 83.54 0.95 1.47 16 4 C 0.05 1.25 6.91 37.63 0.26 1.51 16 5 N -0.65 -16.98 5.39 -317.69 -1.71 -18.69 16 6 C 0.70 25.63 8.26 179.05 1.48 27.11 16 7 O -0.62 -28.26 12.95 -4.03 -0.05 -28.32 16 8 N -0.62 -22.21 2.95 -835.13 -2.46 -24.67 16 9 C 0.12 5.09 6.60 86.41 0.57 5.66 16 10 C 0.17 8.59 5.45 86.41 0.47 9.06 16 11 N -0.61 -29.71 2.95 -697.34 -2.06 -31.77 16 12 C -0.26 -13.70 9.58 84.04 0.80 -12.90 16 13 H 0.08 3.80 7.85 -2.91 -0.02 3.77 16 14 C -0.05 -2.88 5.07 84.86 0.43 -2.45 16 15 N -0.94 -55.88 11.00 21.65 0.24 -55.64 16 16 Si 0.97 43.99 29.56 68.60 2.03 46.01 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 18 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 20 C 0.13 4.70 6.70 86.57 0.58 5.28 16 21 C 0.10 2.96 6.58 86.57 0.57 3.53 16 22 C -0.13 -4.29 9.44 22.68 0.21 -4.08 16 23 C -0.06 -1.55 6.88 40.32 0.28 -1.27 16 24 C 0.56 13.71 8.29 69.97 0.58 14.29 16 25 O -0.55 -18.34 17.67 19.42 0.34 -18.00 16 26 O -0.50 -6.29 10.85 -58.20 -0.63 -6.92 16 27 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.10 0.63 6.14 -2.39 -0.01 0.62 16 29 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.23 0.95 8.06 -2.91 -0.02 0.92 16 31 H 0.42 7.44 6.30 -92.71 -0.58 6.86 16 32 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 33 H 0.07 3.15 6.99 -2.39 -0.02 3.14 16 34 H 0.07 4.01 6.03 -2.38 -0.01 4.00 16 35 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 36 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 37 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.08 2.83 7.93 -2.38 -0.02 2.81 16 39 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.11 2.05 5.61 -2.39 -0.01 2.03 16 41 H 0.13 5.54 5.99 -2.91 -0.02 5.53 16 42 H 0.43 1.68 9.11 -74.06 -0.67 1.00 16 Total: -1.00 -85.88 346.71 2.38 -83.50 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -0.17 Total: 13.66 kcal Atomic # 6 Polarization: 40.38 SS G_CDS: 8.54 Total: 48.92 kcal Atomic # 7 Polarization: -131.18 SS G_CDS: -7.68 Total: -138.86 kcal Atomic # 8 Polarization: -52.89 SS G_CDS: -0.34 Total: -53.23 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -85.88 2.38 -83.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608118304.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.172 kcal (2) G-P(sol) polarization free energy of solvation -85.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds