Wall clock time and date at job start Tue Mar 31 2020 12:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40036 * 126.08723 * 2 1 4 4 C 1.31335 * 108.76836 * 179.97438 * 3 2 1 5 5 N 1.40237 * 125.67512 * 179.97438 * 4 3 2 6 6 C 1.34776 * 119.99685 * 180.02562 * 5 4 3 7 7 O 1.21589 * 119.99900 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00302 * 179.97438 * 6 5 4 9 9 C 1.46493 * 120.00456 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.47128 * 269.99867 * 9 8 6 11 11 H 1.08000 * 119.99302 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00436 * 179.72498 * 10 9 8 13 13 N 1.31515 * 119.99684 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00405 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.46683 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47426 * 119.99743 * 14 12 10 17 17 H 1.48501 * 109.46833 * 239.99986 * 14 12 10 18 18 C 1.46507 * 119.99478 * 359.97438 * 8 6 5 19 19 C 1.53002 * 109.47219 * 269.99855 * 18 8 6 20 20 C 1.52995 * 117.49959 * 243.62556 * 19 18 8 21 21 C 1.52995 * 117.49819 * 175.00185 * 19 18 8 22 22 C 1.39771 * 108.64263 * 0.24455 * 4 3 2 23 23 C 1.36737 * 126.08999 * 179.97438 * 2 1 3 24 24 C 1.47012 * 126.42902 * 0.03958 * 23 2 1 25 25 O 1.21554 * 120.00361 * 180.02562 * 24 23 2 26 26 O 1.34821 * 120.00107 * 359.97438 * 24 23 2 27 27 H 1.09004 * 109.47158 * 90.02158 * 1 2 3 28 28 H 1.08999 * 109.47424 * 210.02359 * 1 2 3 29 29 H 1.09004 * 109.47355 * 330.02261 * 1 2 3 30 30 H 0.96994 * 120.00013 * 0.02562 * 5 4 3 31 31 H 1.09001 * 109.47786 * 150.00139 * 9 8 6 32 32 H 1.08998 * 109.47558 * 30.00002 * 9 8 6 33 33 H 0.97004 * 120.00247 * 180.02562 * 13 12 10 34 34 H 1.08993 * 109.47381 * 30.00157 * 18 8 6 35 35 H 1.09002 * 109.46817 * 150.00395 * 18 8 6 36 36 H 1.09001 * 115.54834 * 29.33239 * 19 18 8 37 37 H 1.09004 * 117.49985 * 359.97438 * 20 19 18 38 38 H 1.09003 * 117.50367 * 145.02057 * 20 19 18 39 39 H 1.09007 * 117.50056 * 214.98124 * 21 19 18 40 40 H 1.09000 * 117.50138 * 0.02562 * 21 19 18 41 41 H 1.07996 * 126.18829 * 179.73552 * 22 4 3 42 42 H 0.96706 * 117.00206 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2898 1.1317 0.0000 4 6 3.5436 0.7407 0.0006 5 7 4.6635 1.5848 0.0002 6 6 5.9041 1.0582 0.0004 7 8 6.0523 -0.1486 0.0003 8 7 6.9804 1.8693 -0.0005 9 6 8.3290 1.2970 -0.0009 10 6 8.7921 1.1013 1.4198 11 1 8.1465 1.3763 2.2408 12 6 10.0377 0.5666 1.6714 13 7 10.8216 0.2269 0.6716 14 14 10.6115 0.3234 3.4324 15 1 9.5514 0.7813 4.3660 16 1 10.8910 -1.1158 3.6677 17 1 11.8484 1.1122 3.6634 18 6 6.8018 3.3234 -0.0021 19 6 6.7397 3.8281 -1.4452 20 6 7.8484 4.7737 -1.9112 21 6 6.4382 5.3122 -1.6622 22 6 3.5759 -0.6566 -0.0047 23 6 2.2704 -1.1050 0.0005 24 6 1.8288 -2.5072 0.0003 25 8 2.6502 -3.4031 0.0013 26 8 0.5126 -2.7995 0.0001 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3634 0.8902 0.5135 30 1 4.5452 2.5475 -0.0001 31 1 9.0110 1.9741 -0.5153 32 1 8.3156 0.3356 -0.5143 33 1 11.6979 -0.1497 0.8486 34 1 5.8742 3.5761 0.5114 35 1 7.6408 3.7931 0.5112 36 1 6.3410 3.1218 -2.1734 37 1 8.6219 5.0367 -1.1896 38 1 8.1796 4.6897 -2.9463 39 1 5.8415 5.5825 -2.5334 40 1 6.2845 5.9293 -0.7769 41 1 4.4620 -1.2740 -0.0096 42 1 0.2708 -3.7358 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608149449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:23 Heat of formation + Delta-G solvation = 7.804373 kcal Electronic energy + Delta-G solvation = -27127.072766 eV Core-core repulsion = 23111.069163 eV Total energy + Delta-G solvation = -4016.003603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.48560 -40.06770 -39.42732 -37.31884 -36.39980 -35.01187 -34.38122 -32.71112 -31.91648 -30.57089 -27.92940 -26.73493 -25.82778 -24.71179 -23.15424 -22.21393 -21.11130 -20.76661 -20.64438 -19.17767 -18.56239 -17.73286 -17.16225 -16.52468 -16.28345 -16.12263 -15.29371 -15.24504 -15.06527 -14.78574 -14.62892 -14.11867 -13.92892 -13.84887 -13.41660 -12.95566 -12.91008 -12.48701 -12.36860 -12.26808 -11.88275 -11.53703 -11.38081 -11.24628 -11.22455 -10.89548 -10.68567 -10.64978 -10.60550 -10.31276 -10.12008 -9.78223 -9.60967 -9.28735 -8.95765 -8.41620 -8.21821 -7.68462 -6.02683 -4.07089 0.82364 2.01789 2.37251 2.56935 2.94402 3.15414 3.31957 3.40192 3.44370 3.85545 3.93796 4.26277 4.48458 4.53473 4.74641 4.94026 5.04064 5.04907 5.14185 5.27454 5.30923 5.32321 5.51887 5.56162 5.62966 5.69703 5.72554 5.95404 6.05161 6.10360 6.24887 6.34965 6.42354 6.61031 6.73633 6.98784 7.21149 7.42597 7.50580 7.59478 7.77825 7.95088 8.23677 8.50850 8.92934 9.15144 9.58132 11.05282 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.003851 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.706077 B = 7269.920112 C = 9296.224963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.350 5.350 3 N -0.298 5.298 4 C 0.323 3.677 5 N -0.654 5.654 6 C 0.706 3.294 7 O -0.558 6.558 8 N -0.597 5.597 9 C 0.262 3.738 10 C -0.527 4.527 11 H 0.058 0.942 12 C 0.063 3.937 13 N -0.893 5.893 14 Si 0.897 3.103 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.284 1.284 18 C 0.140 3.860 19 C -0.171 4.171 20 C -0.171 4.171 21 C -0.181 4.181 22 C -0.162 4.162 23 C 0.034 3.966 24 C 0.556 3.444 25 O -0.484 6.484 26 O -0.517 6.517 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.410 0.590 31 H 0.038 0.962 32 H 0.047 0.953 33 H 0.263 0.737 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.193 0.807 42 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.252 4.667 -3.817 21.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.139 5.139 3 N -0.132 5.132 4 C 0.068 3.932 5 N -0.309 5.309 6 C 0.407 3.593 7 O -0.433 6.433 8 N -0.331 5.331 9 C 0.143 3.857 10 C -0.566 4.566 11 H 0.076 0.924 12 C -0.139 4.139 13 N -0.532 5.532 14 Si 0.725 3.275 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.210 1.210 18 C 0.016 3.984 19 C -0.191 4.191 20 C -0.208 4.208 21 C -0.219 4.219 22 C -0.194 4.194 23 C -0.091 4.091 24 C 0.397 3.603 25 O -0.369 6.369 26 O -0.330 6.330 27 H 0.093 0.907 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.247 0.753 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.210 0.790 42 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -20.380 4.789 -3.849 21.286 hybrid contribution 0.610 -0.799 0.904 1.352 sum -19.770 3.990 -2.945 20.383 Atomic orbital electron populations 1.22013 0.72979 1.04890 1.03650 1.48425 1.06186 1.01594 1.57650 1.77290 0.99548 1.06766 1.29611 1.18598 0.86478 0.89772 0.98353 1.42174 1.02165 1.09088 1.77442 1.15762 0.79254 0.85730 0.78577 1.90836 1.83886 1.12272 1.56312 1.47539 1.06872 1.04176 1.74498 1.19298 0.73875 0.95040 0.97518 1.21491 1.00648 1.42129 0.92359 0.92361 1.24901 0.96532 0.95179 0.97324 1.69939 1.09838 1.42867 1.30595 0.86462 0.78402 0.77958 0.84709 1.19845 1.20874 1.21037 1.21031 1.02072 0.82061 0.93267 1.22926 1.04490 0.92607 0.99075 1.22992 0.91893 1.03495 1.02421 1.22938 0.99645 0.96189 1.03125 1.22450 0.96125 0.93688 1.07161 1.20143 0.91422 0.85479 1.12104 1.19445 0.80215 0.87589 0.73062 1.91013 1.54107 1.47079 1.44655 1.84574 1.26192 1.35909 1.86315 0.90666 0.88224 0.89259 0.75301 0.94417 0.93539 0.92774 0.91771 0.89066 0.87838 0.88333 0.89094 0.89114 0.88766 0.79015 0.72299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.83 10.94 59.84 0.65 1.48 16 2 N -0.35 -4.56 4.06 -64.00 -0.26 -4.83 16 3 N -0.30 -4.54 12.56 31.34 0.39 -4.14 16 4 C 0.32 5.54 8.07 -154.46 -1.25 4.30 16 5 N -0.65 -11.06 5.32 -15.63 -0.08 -11.15 16 6 C 0.71 14.78 8.25 -86.92 -0.72 14.07 16 7 O -0.56 -13.85 13.02 5.29 0.07 -13.78 16 8 N -0.60 -12.23 2.46 -180.80 -0.44 -12.67 16 9 C 0.26 6.63 5.16 -5.19 -0.03 6.60 16 10 C -0.53 -14.65 9.39 -34.44 -0.32 -14.98 16 11 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 14 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 15 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C 0.14 2.18 5.45 -4.04 -0.02 2.15 16 19 C -0.17 -2.31 6.01 -90.62 -0.54 -2.86 16 20 C -0.17 -2.14 10.18 -26.73 -0.27 -2.41 16 21 C -0.18 -1.94 10.25 -26.73 -0.27 -2.21 16 22 C -0.16 -2.92 9.41 -39.08 -0.37 -3.29 16 23 C 0.03 0.51 6.95 -82.20 -0.57 -0.06 16 24 C 0.56 7.11 8.31 34.29 0.28 7.40 16 25 O -0.48 -7.85 17.68 -19.31 -0.34 -8.19 16 26 O -0.52 -3.88 10.93 -40.82 -0.45 -4.33 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.10 0.63 6.20 -51.93 -0.32 0.31 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.41 5.72 6.55 -40.82 -0.27 5.46 16 31 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 32 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.06 0.83 6.36 -51.93 -0.33 0.50 16 35 H 0.09 1.47 7.81 -51.93 -0.41 1.06 16 36 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.10 1.26 8.03 -51.93 -0.42 0.84 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.19 4.01 5.87 -52.49 -0.31 3.70 16 42 H 0.42 1.19 9.11 45.56 0.42 1.60 16 LS Contribution 364.40 15.07 5.49 5.49 Total: -1.00 -35.47 364.40 -7.95 -43.42 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -4.52 Total: 7.00 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: -3.52 Total: 11.86 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: 0.34 Total: -58.26 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.72 Total: -26.29 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.47 -7.95 -43.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608149449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.220 kcal (2) G-P(sol) polarization free energy of solvation -35.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds