Wall clock time and date at job start Tue Mar 31 2020 12:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40036 * 126.08723 * 2 1 4 4 C 1.31335 * 108.76836 * 179.97438 * 3 2 1 5 5 N 1.40237 * 125.67512 * 179.97438 * 4 3 2 6 6 C 1.34776 * 119.99685 * 180.02562 * 5 4 3 7 7 O 1.21589 * 119.99900 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00302 * 179.97438 * 6 5 4 9 9 C 1.46493 * 120.00456 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.47128 * 269.99867 * 9 8 6 11 11 H 1.08000 * 119.99302 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00436 * 179.72498 * 10 9 8 13 13 N 1.31515 * 119.99684 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00405 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.46683 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47426 * 119.99743 * 14 12 10 17 17 H 1.48501 * 109.46833 * 239.99986 * 14 12 10 18 18 C 1.46507 * 119.99478 * 359.97438 * 8 6 5 19 19 C 1.53002 * 109.47219 * 269.99855 * 18 8 6 20 20 C 1.52995 * 117.49959 * 243.62556 * 19 18 8 21 21 C 1.52995 * 117.49819 * 175.00185 * 19 18 8 22 22 C 1.39771 * 108.64263 * 0.24455 * 4 3 2 23 23 C 1.36737 * 126.08999 * 179.97438 * 2 1 3 24 24 C 1.47012 * 126.42902 * 0.03958 * 23 2 1 25 25 O 1.21554 * 120.00361 * 180.02562 * 24 23 2 26 26 O 1.34821 * 120.00107 * 359.97438 * 24 23 2 27 27 H 1.09004 * 109.47158 * 90.02158 * 1 2 3 28 28 H 1.08999 * 109.47424 * 210.02359 * 1 2 3 29 29 H 1.09004 * 109.47355 * 330.02261 * 1 2 3 30 30 H 0.96994 * 120.00013 * 0.02562 * 5 4 3 31 31 H 1.09001 * 109.47786 * 150.00139 * 9 8 6 32 32 H 1.08998 * 109.47558 * 30.00002 * 9 8 6 33 33 H 0.97004 * 120.00247 * 180.02562 * 13 12 10 34 34 H 1.08993 * 109.47381 * 30.00157 * 18 8 6 35 35 H 1.09002 * 109.46817 * 150.00395 * 18 8 6 36 36 H 1.09001 * 115.54834 * 29.33239 * 19 18 8 37 37 H 1.09004 * 117.49985 * 359.97438 * 20 19 18 38 38 H 1.09003 * 117.50367 * 145.02057 * 20 19 18 39 39 H 1.09007 * 117.50056 * 214.98124 * 21 19 18 40 40 H 1.09000 * 117.50138 * 0.02562 * 21 19 18 41 41 H 1.07996 * 126.18829 * 179.73552 * 22 4 3 42 42 H 0.96706 * 117.00206 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2898 1.1317 0.0000 4 6 3.5436 0.7407 0.0006 5 7 4.6635 1.5848 0.0002 6 6 5.9041 1.0582 0.0004 7 8 6.0523 -0.1486 0.0003 8 7 6.9804 1.8693 -0.0005 9 6 8.3290 1.2970 -0.0009 10 6 8.7921 1.1013 1.4198 11 1 8.1465 1.3763 2.2408 12 6 10.0377 0.5666 1.6714 13 7 10.8216 0.2269 0.6716 14 14 10.6115 0.3234 3.4324 15 1 9.5514 0.7813 4.3660 16 1 10.8910 -1.1158 3.6677 17 1 11.8484 1.1122 3.6634 18 6 6.8018 3.3234 -0.0021 19 6 6.7397 3.8281 -1.4452 20 6 7.8484 4.7737 -1.9112 21 6 6.4382 5.3122 -1.6622 22 6 3.5759 -0.6566 -0.0047 23 6 2.2704 -1.1050 0.0005 24 6 1.8288 -2.5072 0.0003 25 8 2.6502 -3.4031 0.0013 26 8 0.5126 -2.7995 0.0001 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3634 0.8902 0.5135 30 1 4.5452 2.5475 -0.0001 31 1 9.0110 1.9741 -0.5153 32 1 8.3156 0.3356 -0.5143 33 1 11.6979 -0.1497 0.8486 34 1 5.8742 3.5761 0.5114 35 1 7.6408 3.7931 0.5112 36 1 6.3410 3.1218 -2.1734 37 1 8.6219 5.0367 -1.1896 38 1 8.1796 4.6897 -2.9463 39 1 5.8415 5.5825 -2.5334 40 1 6.2845 5.9293 -0.7769 41 1 4.4620 -1.2740 -0.0096 42 1 0.2708 -3.7358 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608149449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:22 Heat of formation + Delta-G solvation = -16.848923 kcal Electronic energy + Delta-G solvation = -27128.141813 eV Core-core repulsion = 23111.069163 eV Total energy + Delta-G solvation = -4017.072650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.69566 -41.36097 -40.69478 -38.49603 -37.31169 -36.48749 -35.97702 -34.62800 -33.18900 -31.77252 -29.76523 -27.94062 -27.18382 -25.86716 -24.96777 -23.15366 -22.54140 -21.89397 -21.80509 -20.59459 -19.67295 -18.94985 -18.59224 -18.39832 -17.52967 -17.34391 -16.66815 -16.59227 -16.25515 -16.24200 -15.96023 -15.64862 -15.08157 -14.89876 -14.71969 -14.43519 -14.34602 -13.82087 -13.67727 -13.31223 -13.25898 -12.93904 -12.78513 -12.62357 -12.56879 -12.36493 -12.27626 -12.20072 -11.91733 -11.88427 -11.67330 -11.30106 -11.05139 -10.78090 -10.60351 -10.21189 -9.68804 -9.21571 -8.18705 -6.32440 -0.32155 0.86473 1.09732 1.38174 1.41273 1.49240 1.53326 1.74435 1.93265 2.29273 2.42221 2.80252 3.00668 3.11865 3.51887 3.77747 3.84977 4.00497 4.09670 4.17718 4.37857 4.42094 4.47825 4.50268 4.57130 4.79495 4.80087 4.87502 4.94537 4.99305 5.08824 5.24282 5.29388 5.34008 5.34658 5.52569 5.60058 5.64971 5.75090 5.89743 6.09195 6.34561 6.76081 6.78453 6.98363 7.33210 7.53997 8.88327 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.003851 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.706077 B = 7269.920112 C = 9296.224963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.327 5.327 3 N -0.290 5.290 4 C 0.304 3.696 5 N -0.636 5.636 6 C 0.704 3.296 7 O -0.605 6.605 8 N -0.600 5.600 9 C 0.282 3.718 10 C -0.541 4.541 11 H 0.053 0.947 12 C 0.012 3.988 13 N -0.926 5.926 14 Si 0.964 3.036 15 H -0.269 1.269 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.139 3.861 19 C -0.189 4.189 20 C -0.184 4.184 21 C -0.144 4.144 22 C -0.209 4.209 23 C 0.045 3.955 24 C 0.571 3.429 25 O -0.525 6.525 26 O -0.488 6.488 27 H 0.099 0.901 28 H 0.120 0.880 29 H 0.109 0.891 30 H 0.424 0.576 31 H 0.032 0.968 32 H 0.001 0.999 33 H 0.266 0.734 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.154 0.846 42 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.418 6.275 -3.049 24.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.115 5.115 3 N -0.125 5.125 4 C 0.052 3.948 5 N -0.291 5.291 6 C 0.405 3.595 7 O -0.484 6.484 8 N -0.334 5.334 9 C 0.160 3.840 10 C -0.580 4.580 11 H 0.071 0.929 12 C -0.188 4.188 13 N -0.566 5.566 14 Si 0.789 3.211 15 H -0.193 1.193 16 H -0.210 1.210 17 H -0.194 1.194 18 C 0.016 3.984 19 C -0.209 4.209 20 C -0.221 4.221 21 C -0.182 4.182 22 C -0.242 4.242 23 C -0.084 4.084 24 C 0.413 3.587 25 O -0.412 6.412 26 O -0.303 6.303 27 H 0.117 0.883 28 H 0.138 0.862 29 H 0.127 0.873 30 H 0.265 0.735 31 H 0.050 0.950 32 H 0.019 0.981 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.172 0.828 42 H 0.307 0.693 Dipole moment (debyes) X Y Z Total from point charges -23.647 6.469 -3.089 24.709 hybrid contribution 1.349 -1.342 0.611 1.998 sum -22.298 5.127 -2.478 23.013 Atomic orbital electron populations 1.22589 0.69449 1.06941 1.05831 1.48951 1.07785 1.00411 1.54369 1.77253 0.98592 1.07492 1.29211 1.18602 0.86945 0.89419 0.99867 1.41689 1.00948 1.09720 1.76783 1.15852 0.80346 0.85094 0.78254 1.90827 1.84862 1.14464 1.58209 1.47343 1.05166 1.06333 1.74510 1.18702 0.76316 0.92998 0.95939 1.21746 1.00867 1.42258 0.93101 0.92887 1.25766 0.96669 0.94737 1.01586 1.70052 1.10284 1.43481 1.32765 0.85423 0.78385 0.77758 0.79561 1.19309 1.21013 1.19367 1.21276 1.03207 0.78747 0.95166 1.22718 1.06558 0.94311 0.97301 1.23063 0.92823 1.03766 1.02438 1.23050 0.97549 0.93200 1.04358 1.22119 0.96678 0.94185 1.11181 1.20181 0.90732 0.87034 1.10446 1.19084 0.81379 0.86177 0.72105 1.91014 1.55717 1.47876 1.46594 1.84497 1.22472 1.38366 1.84956 0.88282 0.86195 0.87284 0.73537 0.95039 0.98078 0.92463 0.88860 0.89682 0.89199 0.88893 0.88852 0.87253 0.86868 0.82840 0.69273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.02 10.94 127.77 1.40 2.42 16 2 N -0.33 -7.77 4.06 -356.39 -1.45 -9.22 16 3 N -0.29 -8.41 12.56 -54.75 -0.69 -9.10 16 4 C 0.30 10.63 8.07 133.11 1.07 11.70 16 5 N -0.64 -22.02 5.32 -321.62 -1.71 -23.73 16 6 C 0.70 31.18 8.25 179.06 1.48 32.65 16 7 O -0.61 -32.57 13.02 -4.00 -0.05 -32.62 16 8 N -0.60 -25.79 2.46 -844.20 -2.07 -27.87 16 9 C 0.28 15.17 5.16 85.64 0.44 15.61 16 10 C -0.54 -31.21 9.39 25.60 0.24 -30.97 16 11 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 12 C 0.01 0.67 5.46 84.65 0.46 1.13 16 13 N -0.93 -56.08 13.29 21.45 0.28 -55.80 16 14 Si 0.96 45.45 29.54 68.60 2.03 47.47 16 15 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 16 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 18 C 0.14 4.31 5.45 86.38 0.47 4.78 16 19 C -0.19 -5.04 6.01 -10.80 -0.06 -5.10 16 20 C -0.18 -4.48 10.18 30.59 0.31 -4.17 16 21 C -0.14 -2.70 10.25 30.59 0.31 -2.38 16 22 C -0.21 -7.93 9.41 22.59 0.21 -7.72 16 23 C 0.04 1.30 6.95 40.63 0.28 1.58 16 24 C 0.57 13.92 8.31 70.12 0.58 14.50 16 25 O -0.52 -17.22 17.68 19.66 0.35 -16.87 16 26 O -0.49 -5.59 10.93 -57.33 -0.63 -6.21 16 27 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.12 0.94 6.20 -2.39 -0.01 0.93 16 29 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.42 11.59 6.55 -92.71 -0.61 10.99 16 31 H 0.03 1.71 8.07 -2.39 -0.02 1.69 16 32 H 0.00 0.07 7.42 -2.39 -0.02 0.05 16 33 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 34 H 0.09 2.30 6.36 -2.39 -0.02 2.29 16 35 H 0.08 2.75 7.81 -2.39 -0.02 2.73 16 36 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.09 2.36 8.03 -2.38 -0.02 2.34 16 38 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.15 7.11 5.87 -2.91 -0.02 7.09 16 42 H 0.44 0.78 9.11 -74.05 -0.67 0.10 16 Total: -1.00 -83.02 364.40 3.07 -79.95 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -0.19 Total: 19.96 kcal Atomic # 6 Polarization: 26.83 SS G_CDS: 7.20 Total: 34.03 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -5.64 Total: -125.71 kcal Atomic # 8 Polarization: -55.37 SS G_CDS: -0.33 Total: -55.70 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -83.02 3.07 -79.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608149449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.106 kcal (2) G-P(sol) polarization free energy of solvation -83.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds