Wall clock time and date at job start Tue Mar 31 2020 13:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86798 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47394 * 270.00897 * 3 2 1 5 5 H 1.48504 * 109.46710 * 30.00854 * 3 2 1 6 6 H 1.48504 * 109.46821 * 150.00471 * 3 2 1 7 7 C 1.39897 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00049 * 175.55164 * 7 2 1 9 9 C 1.41160 * 119.99847 * 355.55109 * 7 2 1 10 10 C 1.40863 * 120.16258 * 214.78170 * 9 7 2 11 11 C 1.36370 * 119.82813 * 180.02562 * 10 9 7 12 12 C 1.39485 * 120.17067 * 0.02562 * 11 10 9 13 13 N 1.39242 * 119.83696 * 179.97438 * 12 11 10 14 14 C 1.34779 * 119.99524 * 35.29732 * 13 12 11 15 15 O 1.21580 * 120.00343 * 355.71361 * 14 13 12 16 16 N 1.34775 * 119.99403 * 175.98535 * 14 13 12 17 17 C 1.47066 * 136.06053 * 359.36118 * 16 14 13 18 18 C 1.53241 * 88.08497 * 207.20103 * 17 16 14 19 19 C 1.50698 * 114.50700 * 220.45368 * 18 17 16 20 20 C 1.38233 * 119.99733 * 33.57220 * 19 18 17 21 21 C 1.38239 * 119.99784 * 179.76552 * 20 19 18 22 22 C 1.38230 * 119.99798 * 0.50549 * 21 20 19 23 23 C 1.38234 * 120.00292 * 359.74838 * 22 21 20 24 24 C 1.38230 * 119.99986 * 213.84323 * 19 18 17 25 25 C 1.47067 * 136.05552 * 179.72850 * 16 14 13 26 26 C 1.39478 * 120.32832 * 0.23505 * 12 11 10 27 27 C 1.36381 * 120.17096 * 359.47850 * 26 12 11 28 28 H 0.97003 * 120.00029 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.08772 * 0.05037 * 10 9 7 30 30 H 1.08001 * 119.91476 * 180.02562 * 11 10 9 31 31 H 0.96996 * 119.99667 * 215.30127 * 13 12 11 32 32 H 1.09003 * 113.46656 * 321.93042 * 17 16 14 33 33 H 1.08997 * 113.47133 * 92.36892 * 17 16 14 34 34 H 1.08998 * 114.01444 * 87.70899 * 18 17 16 35 35 H 1.08002 * 119.99975 * 359.97438 * 20 19 18 36 36 H 1.08003 * 119.99852 * 180.23328 * 21 20 19 37 37 H 1.07998 * 119.99910 * 179.72366 * 22 21 20 38 38 H 1.08001 * 120.00151 * 179.97438 * 23 22 21 39 39 H 1.08000 * 120.00172 * 0.02562 * 24 19 18 40 40 H 1.09002 * 113.46773 * 267.62210 * 25 16 14 41 41 H 1.09000 * 113.47143 * 38.06175 * 25 16 14 42 42 H 1.07999 * 119.91595 * 179.72228 * 26 12 11 43 43 H 1.08001 * 120.08336 * 180.25477 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4902 2.0465 -1.4000 5 1 1.4403 2.6526 0.7003 6 1 3.5404 1.4400 0.7000 7 6 2.0083 -1.2115 -0.0005 8 1 3.0859 -1.2129 -0.0731 9 6 1.3057 -2.4322 0.0937 10 6 1.8650 -3.5185 0.7947 11 6 1.1805 -4.6948 0.8810 12 6 -0.0702 -4.8241 0.2771 13 7 -0.7628 -6.0285 0.3692 14 6 -0.6810 -6.7686 1.4926 15 8 0.0579 -6.4247 2.3948 16 7 -1.4143 -7.8929 1.6136 17 6 -2.3909 -8.6147 0.7841 18 6 -3.0055 -9.1637 2.0760 19 6 -3.4153 -10.6122 2.0070 20 6 -2.6856 -11.5011 1.2399 21 6 -3.0586 -12.8308 1.1805 22 6 -4.1673 -13.2696 1.8798 23 6 -4.9001 -12.3796 2.6427 24 6 -4.5240 -11.0509 2.7063 25 6 -1.5948 -8.9345 2.6361 26 6 -0.6280 -3.7546 -0.4232 27 6 0.0420 -2.5701 -0.5133 28 1 -0.4850 0.8401 0.0004 29 1 2.8333 -3.4200 1.2628 30 1 1.6078 -5.5285 1.4184 31 1 -1.3041 -6.3348 -0.3752 32 1 -3.0617 -7.9566 0.2316 33 1 -1.9423 -9.3840 0.1556 34 1 -3.7694 -8.5201 2.5122 35 1 -1.8222 -11.1573 0.6898 36 1 -2.4863 -13.5261 0.5842 37 1 -4.4614 -14.3075 1.8298 38 1 -5.7666 -12.7224 3.1887 39 1 -5.0968 -10.3555 3.3018 40 1 -0.9320 -9.7900 2.5060 41 1 -1.5898 -8.5479 3.6552 42 1 -1.5948 -3.8635 -0.8921 43 1 -0.3931 -1.7416 -1.0524 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001622728705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:44 Heat of formation + Delta-G solvation = 65.041051 kcal Electronic energy + Delta-G solvation = -25012.455456 eV Core-core repulsion = 21409.783085 eV Total energy + Delta-G solvation = -3602.672371 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.92656 -39.43753 -38.24599 -36.91699 -34.34278 -32.92941 -32.13304 -31.23990 -29.58540 -29.23925 -27.97370 -26.21593 -24.86625 -23.63850 -22.81951 -21.51418 -20.86634 -20.32362 -19.11717 -17.99368 -17.34985 -17.19338 -16.43140 -16.07711 -15.37364 -15.19994 -15.07253 -14.74654 -14.27215 -13.89947 -13.85065 -13.66792 -13.10310 -12.95141 -12.79445 -12.72818 -12.59428 -12.28277 -12.06643 -11.66621 -11.35368 -11.32064 -11.28536 -11.14155 -11.05289 -10.95682 -10.68586 -10.05730 -9.50847 -9.42418 -9.24781 -9.19081 -8.99922 -8.86503 -8.61011 -7.50034 -6.79507 -6.57221 -4.29423 0.97982 1.07344 2.57015 2.79202 3.11646 3.12068 3.15994 3.20574 3.38209 3.65795 4.01497 4.19167 4.29355 4.42748 4.55777 4.66503 4.74881 4.75961 4.80961 4.96254 5.13862 5.22441 5.24521 5.31839 5.46530 5.63896 5.65761 5.69529 5.71907 5.87608 6.14260 6.19215 6.23353 6.29317 6.49191 6.66062 6.80694 6.96015 7.10267 7.23284 7.32107 7.51050 7.69870 7.93077 7.99690 8.13047 8.35065 8.47580 8.68201 8.96273 8.97653 9.12732 10.34041 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.044102 B = 0.001979 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.737490 B =14144.639104 C =14295.940355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.461 4.461 8 H 0.075 0.925 9 C 0.097 3.903 10 C -0.203 4.203 11 C -0.087 4.087 12 C 0.023 3.977 13 N -0.663 5.663 14 C 0.727 3.273 15 O -0.572 6.572 16 N -0.670 5.670 17 C 0.106 3.894 18 C -0.088 4.088 19 C -0.069 4.069 20 C -0.116 4.116 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.119 4.119 24 C -0.110 4.110 25 C 0.138 3.862 26 C -0.123 4.123 27 C -0.140 4.140 28 H 0.277 0.723 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.391 0.609 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.894 -22.111 0.795 24.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.492 4.492 8 H 0.093 0.907 9 C 0.095 3.905 10 C -0.223 4.223 11 C -0.107 4.107 12 C -0.069 4.069 13 N -0.308 5.308 14 C 0.431 3.569 15 O -0.449 6.449 16 N -0.412 5.412 17 C -0.018 4.018 18 C -0.108 4.108 19 C -0.069 4.069 20 C -0.133 4.133 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.137 4.137 24 C -0.128 4.128 25 C 0.014 3.986 26 C -0.143 4.143 27 C -0.160 4.160 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.224 0.776 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.131 0.869 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.387 -21.441 1.455 23.868 hybrid contribution -0.069 0.540 -0.299 0.622 sum -10.455 -20.900 1.156 23.398 Atomic orbital electron populations 1.69768 1.07253 1.28591 1.38508 1.25870 0.94940 1.01111 0.92645 0.86204 0.80242 0.80571 0.78978 1.19579 1.20354 1.18760 1.19477 0.94687 0.90205 1.44865 0.90663 1.17721 0.92341 0.92031 0.88422 1.20804 1.01196 0.94875 1.05424 1.20426 0.92786 0.97951 0.99580 1.17087 0.93710 0.84931 1.11189 1.42046 1.51612 1.22098 1.15044 1.15335 0.79802 0.78651 0.83157 1.90919 1.41667 1.71116 1.41198 1.48636 1.46775 1.23387 1.22362 1.23001 0.89587 0.94755 0.94457 1.21914 0.97496 0.92982 0.98365 1.19530 0.95667 0.94184 0.97564 1.21090 0.99874 0.93305 0.99080 1.21152 0.97151 0.95731 0.99502 1.21176 0.95782 0.99673 0.97545 1.21159 0.99866 0.93512 0.99190 1.21071 0.96540 0.95990 0.99237 1.22791 0.92690 0.89026 0.94116 1.20289 0.98356 0.93004 1.02672 1.21175 0.97314 0.95415 1.02108 0.91227 0.88595 0.87406 0.77600 0.90391 0.89812 0.86888 0.85794 0.86018 0.86205 0.86063 0.85865 0.90129 0.90185 0.89183 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.54 10.60 55.55 0.59 -20.95 16 2 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 3 Si 0.91 19.35 29.56 -169.99 -5.03 14.32 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.54 9.02 -37.85 -0.34 -12.88 16 8 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 9 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 10 C -0.20 -5.30 9.74 -39.26 -0.38 -5.68 16 11 C -0.09 -2.18 8.61 -39.79 -0.34 -2.52 16 12 C 0.02 0.54 6.31 -83.57 -0.53 0.01 16 13 N -0.66 -12.50 5.31 -14.10 -0.07 -12.57 16 14 C 0.73 13.98 8.62 -86.92 -0.75 13.23 16 15 O -0.57 -13.58 14.54 5.29 0.08 -13.50 16 16 N -0.67 -9.34 3.69 -191.19 -0.71 -10.04 16 17 C 0.11 0.98 7.68 -8.64 -0.07 0.92 16 18 C -0.09 -0.75 4.30 -91.39 -0.39 -1.14 16 19 C -0.07 -0.53 5.35 -104.63 -0.56 -1.09 16 20 C -0.12 -0.86 8.72 -39.58 -0.35 -1.20 16 21 C -0.12 -0.81 10.05 -39.58 -0.40 -1.20 16 22 C -0.12 -0.82 10.05 -39.59 -0.40 -1.21 16 23 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 24 C -0.11 -0.80 9.72 -39.58 -0.38 -1.19 16 25 C 0.14 1.50 8.11 -8.51 -0.07 1.43 16 26 C -0.12 -2.87 9.90 -39.79 -0.39 -3.27 16 27 C -0.14 -3.67 8.62 -39.26 -0.34 -4.01 16 28 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 29 H 0.10 2.38 8.06 -52.49 -0.42 1.95 16 30 H 0.11 2.70 6.22 -52.49 -0.33 2.37 16 31 H 0.39 5.93 8.54 -40.82 -0.35 5.58 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.65 6.20 -51.93 -0.32 0.33 16 34 H 0.11 0.92 8.11 -51.93 -0.42 0.50 16 35 H 0.12 0.82 6.49 -52.49 -0.34 0.48 16 36 H 0.12 0.63 8.06 -52.48 -0.42 0.20 16 37 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 39 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.08 0.79 7.76 -51.93 -0.40 0.39 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 43 H 0.13 3.55 6.13 -52.49 -0.32 3.23 16 LS Contribution 361.05 15.07 5.44 5.44 Total: -1.00 -32.61 361.05 -11.89 -44.49 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.41 Total: 10.05 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -6.77 Total: -17.24 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: -0.19 Total: -43.56 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.08 Total: -13.50 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.61 -11.89 -44.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001622728705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.535 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds