Wall clock time and date at job start Tue Mar 31 2020 13:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86798 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47394 * 270.00897 * 3 2 1 5 5 H 1.48504 * 109.46710 * 30.00854 * 3 2 1 6 6 H 1.48504 * 109.46821 * 150.00471 * 3 2 1 7 7 C 1.39897 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00049 * 175.55164 * 7 2 1 9 9 C 1.41160 * 119.99847 * 355.55109 * 7 2 1 10 10 C 1.40863 * 120.16258 * 214.78170 * 9 7 2 11 11 C 1.36370 * 119.82813 * 180.02562 * 10 9 7 12 12 C 1.39485 * 120.17067 * 0.02562 * 11 10 9 13 13 N 1.39242 * 119.83696 * 179.97438 * 12 11 10 14 14 C 1.34779 * 119.99524 * 35.29732 * 13 12 11 15 15 O 1.21580 * 120.00343 * 355.71361 * 14 13 12 16 16 N 1.34775 * 119.99403 * 175.98535 * 14 13 12 17 17 C 1.47066 * 136.06053 * 359.36118 * 16 14 13 18 18 C 1.53241 * 88.08497 * 207.20103 * 17 16 14 19 19 C 1.50698 * 114.50700 * 220.45368 * 18 17 16 20 20 C 1.38233 * 119.99733 * 33.57220 * 19 18 17 21 21 C 1.38239 * 119.99784 * 179.76552 * 20 19 18 22 22 C 1.38230 * 119.99798 * 0.50549 * 21 20 19 23 23 C 1.38234 * 120.00292 * 359.74838 * 22 21 20 24 24 C 1.38230 * 119.99986 * 213.84323 * 19 18 17 25 25 C 1.47067 * 136.05552 * 179.72850 * 16 14 13 26 26 C 1.39478 * 120.32832 * 0.23505 * 12 11 10 27 27 C 1.36381 * 120.17096 * 359.47850 * 26 12 11 28 28 H 0.97003 * 120.00029 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.08772 * 0.05037 * 10 9 7 30 30 H 1.08001 * 119.91476 * 180.02562 * 11 10 9 31 31 H 0.96996 * 119.99667 * 215.30127 * 13 12 11 32 32 H 1.09003 * 113.46656 * 321.93042 * 17 16 14 33 33 H 1.08997 * 113.47133 * 92.36892 * 17 16 14 34 34 H 1.08998 * 114.01444 * 87.70899 * 18 17 16 35 35 H 1.08002 * 119.99975 * 359.97438 * 20 19 18 36 36 H 1.08003 * 119.99852 * 180.23328 * 21 20 19 37 37 H 1.07998 * 119.99910 * 179.72366 * 22 21 20 38 38 H 1.08001 * 120.00151 * 179.97438 * 23 22 21 39 39 H 1.08000 * 120.00172 * 0.02562 * 24 19 18 40 40 H 1.09002 * 113.46773 * 267.62210 * 25 16 14 41 41 H 1.09000 * 113.47143 * 38.06175 * 25 16 14 42 42 H 1.07999 * 119.91595 * 179.72228 * 26 12 11 43 43 H 1.08001 * 120.08336 * 180.25477 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4902 2.0465 -1.4000 5 1 1.4403 2.6526 0.7003 6 1 3.5404 1.4400 0.7000 7 6 2.0083 -1.2115 -0.0005 8 1 3.0859 -1.2129 -0.0731 9 6 1.3057 -2.4322 0.0937 10 6 1.8650 -3.5185 0.7947 11 6 1.1805 -4.6948 0.8810 12 6 -0.0702 -4.8241 0.2771 13 7 -0.7628 -6.0285 0.3692 14 6 -0.6810 -6.7686 1.4926 15 8 0.0579 -6.4247 2.3948 16 7 -1.4143 -7.8929 1.6136 17 6 -2.3909 -8.6147 0.7841 18 6 -3.0055 -9.1637 2.0760 19 6 -3.4153 -10.6122 2.0070 20 6 -2.6856 -11.5011 1.2399 21 6 -3.0586 -12.8308 1.1805 22 6 -4.1673 -13.2696 1.8798 23 6 -4.9001 -12.3796 2.6427 24 6 -4.5240 -11.0509 2.7063 25 6 -1.5948 -8.9345 2.6361 26 6 -0.6280 -3.7546 -0.4232 27 6 0.0420 -2.5701 -0.5133 28 1 -0.4850 0.8401 0.0004 29 1 2.8333 -3.4200 1.2628 30 1 1.6078 -5.5285 1.4184 31 1 -1.3041 -6.3348 -0.3752 32 1 -3.0617 -7.9566 0.2316 33 1 -1.9423 -9.3840 0.1556 34 1 -3.7694 -8.5201 2.5122 35 1 -1.8222 -11.1573 0.6898 36 1 -2.4863 -13.5261 0.5842 37 1 -4.4614 -14.3075 1.8298 38 1 -5.7666 -12.7224 3.1887 39 1 -5.0968 -10.3555 3.3018 40 1 -0.9320 -9.7900 2.5060 41 1 -1.5898 -8.5479 3.6552 42 1 -1.5948 -3.8635 -0.8921 43 1 -0.3931 -1.7416 -1.0524 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001622728705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:44 Heat of formation + Delta-G solvation = 47.671347 kcal Electronic energy + Delta-G solvation = -25013.208663 eV Core-core repulsion = 21409.783085 eV Total energy + Delta-G solvation = -3603.425578 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.95262 -40.63629 -39.37680 -38.48364 -36.13576 -34.72725 -32.96935 -31.73876 -31.49255 -30.90231 -29.22864 -27.12993 -26.54274 -24.56391 -23.46452 -23.20722 -22.52265 -21.46751 -20.34384 -19.30563 -19.08082 -18.14696 -17.94523 -17.04450 -16.83807 -16.46801 -16.12831 -15.73372 -15.57270 -15.31876 -14.93946 -14.73025 -14.51189 -14.17798 -14.00534 -13.71464 -13.65079 -13.59388 -13.37548 -13.22753 -13.05436 -12.83480 -12.76295 -12.47988 -11.97562 -11.90725 -11.78346 -11.74852 -11.40791 -11.24647 -11.00271 -10.68425 -9.77186 -9.74922 -9.54806 -9.47373 -8.69695 -8.49509 -6.32077 0.44647 0.57104 0.82162 1.13151 1.39828 1.41702 1.51097 1.55897 2.13124 2.25089 2.80462 2.82378 2.97958 3.55306 3.67305 3.77412 3.91490 4.00455 4.21697 4.29693 4.35206 4.37683 4.41525 4.50844 4.52888 4.56723 4.67637 4.72805 4.79287 4.93390 5.11951 5.13370 5.15407 5.17968 5.23963 5.34798 5.43324 5.64382 5.68780 5.70511 5.74109 5.86713 6.03759 6.14642 6.17085 6.32163 6.39195 6.68100 6.97011 7.00413 7.01669 7.59719 8.43374 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.044102 B = 0.001979 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.737490 B =14144.639104 C =14295.940355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.027 3.973 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.497 4.497 8 H 0.072 0.928 9 C 0.066 3.934 10 C -0.218 4.218 11 C -0.099 4.099 12 C 0.039 3.961 13 N -0.655 5.655 14 C 0.721 3.279 15 O -0.626 6.626 16 N -0.671 5.671 17 C 0.105 3.895 18 C -0.066 4.066 19 C -0.078 4.078 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.129 4.129 23 C -0.127 4.127 24 C -0.119 4.119 25 C 0.129 3.871 26 C -0.119 4.119 27 C -0.156 4.156 28 H 0.285 0.715 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.412 0.588 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.133 0.867 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.125 0.875 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.589 -23.602 0.217 26.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.528 4.528 8 H 0.091 0.909 9 C 0.063 3.937 10 C -0.238 4.238 11 C -0.119 4.119 12 C -0.055 4.055 13 N -0.302 5.302 14 C 0.425 3.575 15 O -0.507 6.507 16 N -0.411 5.411 17 C -0.016 4.016 18 C -0.085 4.085 19 C -0.078 4.078 20 C -0.141 4.141 21 C -0.145 4.145 22 C -0.147 4.147 23 C -0.145 4.145 24 C -0.137 4.137 25 C 0.006 3.994 26 C -0.139 4.139 27 C -0.176 4.176 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.248 0.752 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.136 0.864 35 H 0.148 0.852 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.151 0.849 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.143 0.857 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.147 -23.021 0.847 26.043 hybrid contribution 0.336 0.732 -0.079 0.809 sum -11.810 -22.289 0.768 25.237 Atomic orbital electron populations 1.69828 1.08560 1.29940 1.38665 1.26748 0.95841 1.04313 0.91601 0.85093 0.78627 0.75771 0.79492 1.18316 1.19407 1.18760 1.19706 0.94826 0.91284 1.47005 0.90934 1.18040 0.93448 0.92687 0.89514 1.20914 1.01589 0.95385 1.05936 1.20511 0.93821 0.97483 1.00123 1.17110 0.92992 0.86325 1.09047 1.41806 1.51487 1.20843 1.16079 1.15488 0.79781 0.79790 0.82427 1.90880 1.44079 1.72892 1.42828 1.48638 1.45757 1.22208 1.24475 1.23339 0.88535 0.94792 0.94965 1.21704 0.95884 0.93812 0.97085 1.19442 0.96346 0.93511 0.98544 1.21235 1.00079 0.93651 0.99182 1.21411 0.97463 0.95868 0.99714 1.21486 0.95519 1.00671 0.96997 1.21433 1.00462 0.93363 0.99268 1.21277 0.96545 0.96635 0.99241 1.23099 0.94853 0.88280 0.93150 1.20520 0.99317 0.91910 1.02170 1.21169 0.97444 0.96306 1.02718 0.90479 0.88609 0.87804 0.75186 0.88931 0.87652 0.86414 0.85176 0.84558 0.84465 0.84414 0.84875 0.88756 0.91348 0.85749 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.20 10.60 21.82 0.23 -44.97 16 2 C 0.03 1.39 5.42 85.24 0.46 1.85 16 3 Si 0.99 39.88 29.56 68.60 2.03 41.91 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.50 -27.96 9.02 23.39 0.21 -27.75 16 8 H 0.07 3.94 7.85 -2.91 -0.02 3.92 16 9 C 0.07 3.72 5.55 -21.28 -0.12 3.60 16 10 C -0.22 -11.85 9.74 22.48 0.22 -11.63 16 11 C -0.10 -5.07 8.61 22.13 0.19 -4.88 16 12 C 0.04 1.80 6.31 38.56 0.24 2.05 16 13 N -0.66 -23.86 5.31 -316.78 -1.68 -25.54 16 14 C 0.72 27.33 8.62 179.05 1.54 28.87 16 15 O -0.63 -30.19 14.54 -3.97 -0.06 -30.25 16 16 N -0.67 -17.66 3.69 -877.07 -3.24 -20.90 16 17 C 0.11 1.66 7.68 83.09 0.64 2.30 16 18 C -0.07 -0.96 4.30 -11.29 -0.05 -1.00 16 19 C -0.08 -1.02 5.35 -19.87 -0.11 -1.13 16 20 C -0.12 -1.53 8.72 22.27 0.19 -1.34 16 21 C -0.13 -1.42 10.05 22.27 0.22 -1.20 16 22 C -0.13 -1.37 10.05 22.27 0.22 -1.14 16 23 C -0.13 -1.40 10.05 22.27 0.22 -1.17 16 24 C -0.12 -1.45 9.72 22.27 0.22 -1.24 16 25 C 0.13 2.64 8.11 83.18 0.67 3.32 16 26 C -0.12 -5.50 9.90 22.14 0.22 -5.28 16 27 C -0.16 -8.36 8.62 22.48 0.19 -8.16 16 28 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 29 H 0.10 5.01 8.06 -2.91 -0.02 4.98 16 30 H 0.10 5.37 6.22 -2.91 -0.02 5.35 16 31 H 0.41 11.46 8.54 -92.71 -0.79 10.67 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.11 1.28 6.20 -2.39 -0.01 1.27 16 34 H 0.12 1.63 8.11 -2.39 -0.02 1.61 16 35 H 0.13 1.37 6.49 -2.91 -0.02 1.35 16 36 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 37 H 0.14 0.91 8.06 -2.91 -0.02 0.88 16 38 H 0.14 0.98 8.06 -2.91 -0.02 0.95 16 39 H 0.13 1.28 8.06 -2.91 -0.02 1.26 16 40 H 0.09 1.69 7.76 -2.39 -0.02 1.67 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.12 4.82 8.06 -2.91 -0.02 4.79 16 43 H 0.12 6.68 6.13 -2.91 -0.02 6.66 16 Total: -1.00 -73.00 361.05 2.94 -70.07 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: 0.25 Total: 33.62 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: 5.40 Total: -23.93 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -4.69 Total: -91.41 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.06 Total: -30.25 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -73.00 2.94 -70.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001622728705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.737 kcal (2) G-P(sol) polarization free energy of solvation -73.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds