Wall clock time and date at job start Tue Mar 31 2020 12:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45208 * 109.46832 * 2 1 4 4 C 1.34716 * 116.99614 * 179.97438 * 3 2 1 5 5 O 1.21468 * 120.00349 * 0.02562 * 4 3 2 6 6 C 1.47759 * 119.99854 * 179.97438 * 4 3 2 7 7 N 1.31543 * 126.04695 * 359.69000 * 6 4 3 8 8 N 1.28850 * 108.68800 * 180.26359 * 7 6 4 9 9 H 0.97003 * 125.74742 * 180.02562 * 8 7 6 10 10 C 1.34608 * 108.50792 * 359.97438 * 8 7 6 11 11 C 1.50704 * 126.18286 * 179.97438 * 10 8 7 12 12 C 1.53040 * 109.45857 * 35.05197 * 11 10 8 13 13 C 1.53187 * 109.31386 * 178.61319 * 12 11 10 14 14 N 1.46931 * 108.77750 * 54.63062 * 13 12 11 15 15 C 1.34774 * 120.62880 * 126.41076 * 14 13 12 16 16 O 1.21695 * 119.99502 * 174.72200 * 15 14 13 17 17 C 1.46368 * 120.00322 * 354.72595 * 15 14 13 18 18 H 1.07996 * 120.00301 * 5.63800 * 17 15 14 19 19 C 1.40051 * 119.99984 * 185.63667 * 17 15 14 20 20 N 1.30672 * 119.99993 * 0.02562 * 19 17 15 21 21 Si 1.86807 * 119.99911 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46837 * 90.00212 * 21 19 17 23 23 H 1.48500 * 109.46880 * 209.99955 * 21 19 17 24 24 H 1.48495 * 109.47079 * 330.00589 * 21 19 17 25 25 C 1.46926 * 118.73517 * 306.39654 * 14 13 12 26 26 C 1.53032 * 109.46159 * 274.98254 * 11 10 8 27 27 N 1.30852 * 107.63736 * 0.02562 * 10 8 7 28 28 H 1.09004 * 109.47280 * 300.00076 * 1 2 3 29 29 H 1.09000 * 109.47071 * 60.00344 * 1 2 3 30 30 H 1.08997 * 109.47021 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47432 * 239.99644 * 2 1 3 32 32 H 1.09000 * 109.47071 * 119.99656 * 2 1 3 33 33 H 1.09000 * 109.45851 * 155.00265 * 11 10 8 34 34 H 1.09010 * 109.49600 * 298.56378 * 12 11 10 35 35 H 1.08996 * 109.50109 * 58.65983 * 12 11 10 36 36 H 1.09000 * 109.58726 * 294.84871 * 13 12 11 37 37 H 1.08997 * 109.59192 * 174.42020 * 13 12 11 38 38 H 0.97005 * 119.99702 * 179.97438 * 20 19 17 39 39 H 1.09000 * 109.58648 * 293.81535 * 25 14 13 40 40 H 1.09005 * 109.58447 * 173.39113 * 25 14 13 41 41 H 1.09004 * 109.49926 * 301.33685 * 26 11 10 42 42 H 1.08994 * 109.50605 * 61.39801 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3495 1.5455 0.0005 5 8 4.0894 0.5823 0.0005 6 6 3.9142 2.9110 0.0000 7 7 3.2273 4.0327 -0.0067 8 7 4.0526 5.0222 -0.0105 9 1 3.8110 5.9617 -0.0153 10 6 5.3065 4.5328 -0.0055 11 6 6.5776 5.3424 -0.0079 12 6 6.3716 6.6174 0.8131 13 6 7.6757 7.4207 0.8372 14 7 8.1110 7.6574 -0.5460 15 6 8.3749 8.9063 -0.9786 16 8 8.8262 9.0807 -2.0952 17 6 8.1188 10.0527 -0.1054 18 1 7.8051 9.8944 0.9158 19 6 8.2804 11.3552 -0.5942 20 7 8.6595 11.5469 -1.8300 21 14 7.9529 12.8184 0.5200 22 1 9.2048 13.1937 1.2250 23 1 7.4811 13.9660 -0.2959 24 1 6.9125 12.4585 1.5166 25 6 8.2535 6.5068 -1.4484 26 6 6.9428 5.7137 -1.4469 27 7 5.2224 3.2270 0.0008 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 7.3835 4.7543 0.4312 34 1 5.5825 7.2181 0.3604 35 1 6.0886 6.3524 1.8318 36 1 8.4419 6.8577 1.3701 37 1 7.5077 8.3753 1.3358 38 1 8.7711 12.4490 -2.1686 39 1 9.0668 5.8692 -1.1019 40 1 8.4667 6.8583 -2.4579 41 1 7.0665 4.8055 -2.0368 42 1 6.1483 6.3223 -1.8786 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645729688.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:47 Heat of formation + Delta-G solvation = -38.044057 kcal Electronic energy + Delta-G solvation = -26603.824375 eV Core-core repulsion = 22585.832635 eV Total energy + Delta-G solvation = -4017.991740 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.78037 -40.49315 -38.80404 -36.90181 -36.20848 -33.71602 -33.20765 -32.58809 -32.08216 -30.90350 -30.30842 -26.65727 -25.86652 -25.01532 -23.27704 -22.80675 -22.09534 -21.30627 -20.57364 -19.09644 -18.40989 -17.88469 -17.11670 -16.80120 -16.63890 -16.21833 -15.85822 -14.95131 -14.60554 -14.36223 -14.26538 -14.07530 -13.95578 -13.60728 -13.29055 -13.13789 -12.60434 -12.44543 -12.32974 -12.01741 -11.99448 -11.71483 -11.37909 -11.20076 -11.11590 -10.99805 -10.94889 -10.89745 -10.88260 -10.80905 -10.66351 -10.44852 -10.31909 -10.03603 -9.63001 -8.94827 -7.69026 -7.38260 -6.29356 -4.75087 0.92229 1.75238 1.90723 2.49188 2.89655 3.06818 3.14197 3.16388 3.86036 3.99065 4.02866 4.41647 4.43728 4.50331 4.56273 4.59832 4.85882 4.89229 4.90348 5.21727 5.26646 5.39544 5.40188 5.57015 5.60950 5.61562 5.68261 5.74432 5.83650 5.93894 6.00722 6.03855 6.08703 6.25974 6.31532 6.42233 6.51299 6.59146 7.33284 7.35905 7.48589 7.81648 8.01695 8.22854 8.92523 9.31156 10.47254 10.65690 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028113 B = 0.002333 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.735367 B =11999.252748 C =12471.913012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 O -0.341 6.341 4 C 0.572 3.428 5 O -0.477 6.477 6 C 0.154 3.846 7 N -0.248 5.248 8 N -0.387 5.387 9 H 0.455 0.545 10 C 0.246 3.754 11 C -0.005 4.005 12 C -0.136 4.136 13 C 0.125 3.875 14 N -0.644 5.644 15 C 0.559 3.441 16 O -0.576 6.576 17 C -0.545 4.545 18 H 0.073 0.927 19 C 0.088 3.912 20 N -0.766 5.766 21 Si 0.906 3.094 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.265 1.265 25 C 0.122 3.878 26 C -0.123 4.123 27 N -0.455 5.455 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.101 0.899 38 H 0.269 0.731 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.537 -15.593 6.240 21.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.256 6.256 4 C 0.411 3.589 5 O -0.359 6.359 6 C -0.123 4.123 7 N -0.091 5.091 8 N -0.111 5.111 9 H 0.303 0.697 10 C -0.031 4.031 11 C -0.026 4.026 12 C -0.175 4.175 13 C 0.000 4.000 14 N -0.383 5.383 15 C 0.365 3.635 16 O -0.458 6.458 17 C -0.582 4.582 18 H 0.091 0.909 19 C -0.133 4.133 20 N -0.395 5.395 21 Si 0.730 3.270 22 H -0.197 1.197 23 H -0.205 1.205 24 H -0.189 1.189 25 C -0.002 4.002 26 C -0.163 4.163 27 N -0.181 5.181 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.119 0.881 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.450 -16.136 5.452 21.703 hybrid contribution -0.316 1.210 0.614 1.393 sum -13.767 -14.925 6.066 21.192 Atomic orbital electron populations 1.21813 0.92185 1.03103 1.03842 1.23157 0.95609 0.79259 1.03050 1.86600 1.22232 1.32875 1.83937 1.18701 0.80983 0.85740 0.73503 1.90896 1.60537 1.40380 1.44114 1.22223 0.87929 0.91505 1.10688 1.74401 1.20909 0.95434 1.18367 1.45143 1.04744 1.10251 1.50936 0.69677 1.25226 0.89464 0.89496 0.98889 1.19962 0.89220 0.94291 0.99168 1.22137 1.01180 0.94906 0.99287 1.21383 0.92487 1.00406 0.85713 1.48255 1.73285 1.06645 1.10102 1.18259 0.77483 0.80563 0.87182 1.90606 1.48988 1.83823 1.22420 1.20957 1.49153 0.89539 0.98546 0.90858 1.25732 0.92779 0.99895 0.94855 1.70006 1.32923 1.22225 1.14329 0.86401 0.79286 0.80784 0.80480 1.19664 1.20462 1.18905 1.21115 0.93764 0.87943 0.97377 1.22022 1.00291 1.00532 0.93434 1.71283 1.16593 1.10468 1.19778 0.91287 0.91263 0.89956 0.90771 0.90785 0.87074 0.91415 0.91007 0.93325 0.88138 0.91995 0.93376 0.89216 0.90905 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.29 37.16 0.38 -0.45 16 2 C 0.06 0.51 6.19 37.16 0.23 0.74 16 3 O -0.34 -3.96 10.23 -40.54 -0.41 -4.37 16 4 C 0.57 8.01 7.97 34.62 0.28 8.28 16 5 O -0.48 -7.55 16.88 -19.24 -0.32 -7.88 16 6 C 0.15 2.24 7.99 -156.34 -1.25 0.99 16 7 N -0.25 -3.25 12.32 32.06 0.40 -2.86 16 8 N -0.39 -4.34 6.72 32.66 0.22 -4.12 16 9 H 0.46 3.76 8.21 -190.21 -1.56 2.20 16 10 C 0.25 3.14 6.95 -155.52 -1.08 2.06 16 11 C -0.01 -0.06 2.62 -91.73 -0.24 -0.31 16 12 C -0.14 -1.62 5.09 -26.61 -0.14 -1.75 16 13 C 0.12 1.95 6.35 -3.71 -0.02 1.93 16 14 N -0.64 -13.04 2.97 -174.43 -0.52 -13.56 16 15 C 0.56 14.78 7.61 -12.99 -0.10 14.68 16 16 O -0.58 -17.72 14.48 5.19 0.08 -17.65 16 17 C -0.55 -14.18 8.88 -35.63 -0.32 -14.50 16 18 H 0.07 1.70 5.64 -52.49 -0.30 1.41 16 19 C 0.09 2.30 5.50 -17.37 -0.10 2.21 16 20 N -0.77 -21.96 11.84 55.55 0.66 -21.30 16 21 Si 0.91 18.97 29.56 -169.99 -5.02 13.94 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 23 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 25 C 0.12 2.14 6.42 -3.71 -0.02 2.11 16 26 C -0.12 -1.71 5.34 -26.62 -0.14 -1.85 16 27 N -0.46 -6.89 11.41 -8.56 -0.10 -6.99 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 0.79 7.51 -51.92 -0.39 0.40 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 1.67 5.30 -51.93 -0.28 1.40 16 38 H 0.27 7.02 8.29 -40.82 -0.34 6.68 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.09 1.81 7.04 -51.93 -0.37 1.44 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 356.48 15.07 5.37 5.37 Total: -1.00 -35.47 356.48 -8.85 -44.31 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.67 Total: 0.96 kcal Atomic # 6 Polarization: 16.66 SS G_CDS: -2.52 Total: 14.14 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.66 Total: -48.83 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.66 Total: -29.90 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.47 -8.85 -44.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645729688.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.270 kcal (2) G-P(sol) polarization free energy of solvation -35.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds