Wall clock time and date at job start Tue Mar 31 2020 12:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45208 * 109.46832 * 2 1 4 4 C 1.34716 * 116.99614 * 179.97438 * 3 2 1 5 5 O 1.21468 * 120.00349 * 0.02562 * 4 3 2 6 6 C 1.47759 * 119.99854 * 179.97438 * 4 3 2 7 7 N 1.31543 * 126.04695 * 359.69000 * 6 4 3 8 8 N 1.28850 * 108.68800 * 180.26359 * 7 6 4 9 9 H 0.97003 * 125.74742 * 180.02562 * 8 7 6 10 10 C 1.34608 * 108.50792 * 359.97438 * 8 7 6 11 11 C 1.50704 * 126.18286 * 179.97438 * 10 8 7 12 12 C 1.53040 * 109.45857 * 35.05197 * 11 10 8 13 13 C 1.53187 * 109.31386 * 178.61319 * 12 11 10 14 14 N 1.46931 * 108.77750 * 54.63062 * 13 12 11 15 15 C 1.34774 * 120.62880 * 126.41076 * 14 13 12 16 16 O 1.21695 * 119.99502 * 174.72200 * 15 14 13 17 17 C 1.46368 * 120.00322 * 354.72595 * 15 14 13 18 18 H 1.07996 * 120.00301 * 5.63800 * 17 15 14 19 19 C 1.40051 * 119.99984 * 185.63667 * 17 15 14 20 20 N 1.30672 * 119.99993 * 0.02562 * 19 17 15 21 21 Si 1.86807 * 119.99911 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46837 * 90.00212 * 21 19 17 23 23 H 1.48500 * 109.46880 * 209.99955 * 21 19 17 24 24 H 1.48495 * 109.47079 * 330.00589 * 21 19 17 25 25 C 1.46926 * 118.73517 * 306.39654 * 14 13 12 26 26 C 1.53032 * 109.46159 * 274.98254 * 11 10 8 27 27 N 1.30852 * 107.63736 * 0.02562 * 10 8 7 28 28 H 1.09004 * 109.47280 * 300.00076 * 1 2 3 29 29 H 1.09000 * 109.47071 * 60.00344 * 1 2 3 30 30 H 1.08997 * 109.47021 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47432 * 239.99644 * 2 1 3 32 32 H 1.09000 * 109.47071 * 119.99656 * 2 1 3 33 33 H 1.09000 * 109.45851 * 155.00265 * 11 10 8 34 34 H 1.09010 * 109.49600 * 298.56378 * 12 11 10 35 35 H 1.08996 * 109.50109 * 58.65983 * 12 11 10 36 36 H 1.09000 * 109.58726 * 294.84871 * 13 12 11 37 37 H 1.08997 * 109.59192 * 174.42020 * 13 12 11 38 38 H 0.97005 * 119.99702 * 179.97438 * 20 19 17 39 39 H 1.09000 * 109.58648 * 293.81535 * 25 14 13 40 40 H 1.09005 * 109.58447 * 173.39113 * 25 14 13 41 41 H 1.09004 * 109.49926 * 301.33685 * 26 11 10 42 42 H 1.08994 * 109.50605 * 61.39801 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3495 1.5455 0.0005 5 8 4.0894 0.5823 0.0005 6 6 3.9142 2.9110 0.0000 7 7 3.2273 4.0327 -0.0067 8 7 4.0526 5.0222 -0.0105 9 1 3.8110 5.9617 -0.0153 10 6 5.3065 4.5328 -0.0055 11 6 6.5776 5.3424 -0.0079 12 6 6.3716 6.6174 0.8131 13 6 7.6757 7.4207 0.8372 14 7 8.1110 7.6574 -0.5460 15 6 8.3749 8.9063 -0.9786 16 8 8.8262 9.0807 -2.0952 17 6 8.1188 10.0527 -0.1054 18 1 7.8051 9.8944 0.9158 19 6 8.2804 11.3552 -0.5942 20 7 8.6595 11.5469 -1.8300 21 14 7.9529 12.8184 0.5200 22 1 9.2048 13.1937 1.2250 23 1 7.4811 13.9660 -0.2959 24 1 6.9125 12.4585 1.5166 25 6 8.2535 6.5068 -1.4484 26 6 6.9428 5.7137 -1.4469 27 7 5.2224 3.2270 0.0008 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 7.3835 4.7543 0.4312 34 1 5.5825 7.2181 0.3604 35 1 6.0886 6.3524 1.8318 36 1 8.4419 6.8577 1.3701 37 1 7.5077 8.3753 1.3358 38 1 8.7711 12.4490 -2.1686 39 1 9.0668 5.8692 -1.1019 40 1 8.4667 6.8583 -2.4579 41 1 7.0665 4.8055 -2.0368 42 1 6.1483 6.3223 -1.8786 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645729688.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:46 Heat of formation + Delta-G solvation = -62.209049 kcal Electronic energy + Delta-G solvation = -26604.872248 eV Core-core repulsion = 22585.832635 eV Total energy + Delta-G solvation = -4019.039613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.80450 -41.46813 -40.29944 -37.92394 -37.84227 -34.81089 -34.71534 -34.40445 -32.79277 -32.17204 -31.46437 -28.50748 -26.88096 -26.34461 -24.16634 -23.93436 -23.24899 -22.36926 -21.84266 -20.58907 -19.45243 -18.93963 -18.34414 -18.06953 -17.71295 -17.69194 -17.14257 -16.34344 -16.06408 -15.77256 -15.51477 -15.15328 -14.86179 -14.82199 -14.56906 -14.26212 -13.69173 -13.63238 -13.45208 -13.30602 -13.03810 -12.99524 -12.74516 -12.57064 -12.52621 -12.29937 -12.16604 -12.14437 -12.03963 -11.93740 -11.72923 -11.66483 -11.58890 -11.51089 -10.90036 -10.71015 -9.72837 -9.06908 -8.25159 -6.78695 -0.11629 0.72620 1.00456 1.43683 1.44410 1.58208 1.59034 1.83405 2.26126 2.50460 2.83813 2.93992 3.00939 3.51450 3.66937 3.79034 3.85528 4.00109 4.03273 4.19090 4.21374 4.32415 4.39961 4.54260 4.56841 4.73540 4.80559 4.88615 4.89949 4.92620 4.97153 4.98889 5.00174 5.05288 5.08517 5.31184 5.35038 5.45450 5.63938 5.82123 6.20348 6.35634 6.44557 6.79945 6.93157 7.47854 8.52149 8.71968 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028113 B = 0.002333 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.735367 B =11999.252748 C =12471.913012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.342 6.342 4 C 0.574 3.426 5 O -0.504 6.504 6 C 0.135 3.865 7 N -0.243 5.243 8 N -0.371 5.371 9 H 0.469 0.531 10 C 0.252 3.748 11 C 0.006 3.994 12 C -0.126 4.126 13 C 0.118 3.882 14 N -0.645 5.645 15 C 0.542 3.458 16 O -0.635 6.635 17 C -0.565 4.565 18 H 0.100 0.900 19 C 0.028 3.972 20 N -0.825 5.825 21 Si 0.991 3.009 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.242 1.242 25 C 0.121 3.879 26 C -0.111 4.111 27 N -0.480 5.480 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.122 0.878 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.272 0.728 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.084 0.916 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.426 -16.049 8.764 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.257 6.257 4 C 0.414 3.586 5 O -0.388 6.388 6 C -0.141 4.141 7 N -0.087 5.087 8 N -0.097 5.097 9 H 0.320 0.680 10 C -0.025 4.025 11 C -0.015 4.015 12 C -0.165 4.165 13 C -0.005 4.005 14 N -0.381 5.381 15 C 0.348 3.652 16 O -0.523 6.523 17 C -0.601 4.601 18 H 0.118 0.882 19 C -0.187 4.187 20 N -0.454 5.454 21 Si 0.811 3.189 22 H -0.191 1.191 23 H -0.205 1.205 24 H -0.165 1.165 25 C -0.003 4.003 26 C -0.150 4.150 27 N -0.207 5.207 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.140 0.860 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.388 -16.636 8.027 24.041 hybrid contribution 0.254 1.244 -0.185 1.283 sum -15.134 -15.392 7.842 22.966 Atomic orbital electron populations 1.21849 0.89942 1.04714 1.03803 1.23537 0.97296 0.77737 1.03485 1.86607 1.20836 1.35015 1.83266 1.18752 0.81560 0.85390 0.72892 1.90872 1.61256 1.41072 1.45646 1.22382 0.87976 0.92101 1.11675 1.74378 1.21025 0.95427 1.17829 1.45149 1.04146 1.10706 1.49705 0.68012 1.25071 0.89740 0.88966 0.98711 1.19834 0.89405 0.94509 0.97722 1.22057 0.99078 0.94011 1.01306 1.21620 0.94952 1.01003 0.82886 1.48079 1.72204 1.05557 1.12302 1.18657 0.77139 0.82815 0.86599 1.90559 1.51509 1.85439 1.24743 1.21515 1.48932 0.89930 0.99752 0.88220 1.26968 0.91788 1.03594 0.96302 1.70200 1.34957 1.23164 1.17126 0.85107 0.79701 0.75862 0.78214 1.19089 1.20450 1.16510 1.21187 0.96525 0.87494 0.95071 1.21846 0.97857 1.00126 0.95195 1.71234 1.17218 1.11679 1.20541 0.91210 0.91365 0.87485 0.90496 0.90303 0.86017 0.91014 0.87611 0.91262 0.89019 0.91840 0.91557 0.92911 0.89760 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.29 71.98 0.74 -0.57 16 2 C 0.05 0.78 6.19 71.98 0.45 1.23 16 3 O -0.34 -7.60 10.23 -56.26 -0.58 -8.18 16 4 C 0.57 15.67 7.97 70.34 0.56 16.23 16 5 O -0.50 -15.81 16.88 19.94 0.34 -15.47 16 6 C 0.14 3.76 7.99 137.07 1.09 4.86 16 7 N -0.24 -5.88 12.32 -52.48 -0.65 -6.52 16 8 N -0.37 -7.36 6.72 -50.60 -0.34 -7.70 16 9 H 0.47 6.35 8.21 -219.79 -1.80 4.54 16 10 C 0.25 5.78 6.95 138.16 0.96 6.74 16 11 C 0.01 0.14 2.62 -11.51 -0.03 0.11 16 12 C -0.13 -2.57 5.09 30.67 0.16 -2.41 16 13 C 0.12 3.42 6.35 86.36 0.55 3.97 16 14 N -0.64 -25.98 2.97 -823.99 -2.45 -28.43 16 15 C 0.54 29.40 7.61 86.36 0.66 30.05 16 16 O -0.64 -41.11 14.48 -4.33 -0.06 -41.17 16 17 C -0.57 -29.44 8.88 24.83 0.22 -29.22 16 18 H 0.10 4.48 5.64 -2.91 -0.02 4.46 16 19 C 0.03 1.50 5.50 85.31 0.47 1.97 16 20 N -0.82 -48.93 11.84 21.84 0.26 -48.67 16 21 Si 0.99 38.54 29.56 68.60 2.03 40.57 16 22 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 23 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 24 H -0.24 -8.44 7.11 99.48 0.71 -7.73 16 25 C 0.12 4.24 6.42 86.36 0.55 4.79 16 26 C -0.11 -2.93 5.34 30.67 0.16 -2.77 16 27 N -0.48 -13.70 11.41 -180.99 -2.06 -15.76 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.07 1.45 7.51 -2.38 -0.02 1.43 16 35 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.09 2.83 5.30 -2.39 -0.01 2.82 16 38 H 0.27 14.72 8.29 -92.70 -0.77 13.95 16 39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.05 2.24 7.04 -2.38 -0.02 2.23 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -81.00 356.48 2.30 -78.71 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -0.73 Total: 17.65 kcal Atomic # 6 Polarization: 28.44 SS G_CDS: 6.54 Total: 34.98 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -5.24 Total: -107.09 kcal Atomic # 8 Polarization: -64.52 SS G_CDS: -0.30 Total: -64.82 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -81.00 2.30 -78.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645729688.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.499 kcal (2) G-P(sol) polarization free energy of solvation -81.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds