Wall clock time and date at job start Tue Mar 31 2020 12:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47618 * 2 1 4 4 C 1.37727 * 127.16627 * 83.72792 * 3 2 1 5 5 C 1.47243 * 126.49220 * 359.97438 * 4 3 2 6 6 N 1.30839 * 126.22878 * 0.02962 * 5 4 3 7 7 N 1.26259 * 116.18335 * 179.97438 * 6 5 4 8 8 C 1.29394 * 117.91387 * 0.02562 * 7 6 5 9 9 C 1.50701 * 125.51634 * 180.02562 * 8 7 6 10 10 S 1.71277 * 108.95968 * 359.72550 * 8 7 6 11 11 N 1.31452 * 107.01336 * 180.02562 * 4 3 2 12 12 N 1.28512 * 109.90771 * 359.97438 * 11 4 3 13 13 C 1.31458 * 110.11132 * 359.72416 * 12 11 4 14 14 N 1.38322 * 126.35153 * 180.29584 * 13 12 11 15 15 C 1.46896 * 111.00306 * 242.30557 * 14 13 12 16 16 C 1.46905 * 111.00005 * 6.26221 * 14 13 12 17 17 H 1.08998 * 109.47024 * 54.99460 * 16 14 13 18 18 C 1.53000 * 109.47045 * 294.99773 * 16 14 13 19 19 C 1.50700 * 109.47439 * 174.99597 * 16 14 13 20 20 H 1.08001 * 119.99580 * 0.02562 * 19 16 14 21 21 C 1.37870 * 120.00149 * 179.97438 * 19 16 14 22 22 N 1.31520 * 119.99949 * 0.02562 * 21 19 16 23 23 Si 1.86801 * 120.00038 * 180.02562 * 21 19 16 24 24 H 1.48502 * 109.47065 * 60.00250 * 23 21 19 25 25 H 1.48503 * 109.47087 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47052 * 299.99723 * 23 21 19 27 27 H 1.08996 * 109.47366 * 173.11773 * 1 2 3 28 28 H 1.08999 * 109.47118 * 293.11990 * 1 2 3 29 29 H 1.09005 * 109.47107 * 53.12106 * 1 2 3 30 30 H 1.08998 * 109.47273 * 120.00395 * 2 1 3 31 31 H 1.09002 * 109.46704 * 240.00059 * 2 1 3 32 32 H 1.08999 * 109.46826 * 89.97887 * 9 8 7 33 33 H 1.08997 * 109.47273 * 209.97289 * 9 8 7 34 34 H 1.09002 * 109.47353 * 329.98155 * 9 8 7 35 35 H 1.09005 * 109.46855 * 51.82871 * 15 14 13 36 36 H 1.09007 * 109.46907 * 171.82119 * 15 14 13 37 37 H 1.08995 * 109.47059 * 291.82072 * 15 14 13 38 38 H 1.08996 * 109.47181 * 300.00470 * 18 16 14 39 39 H 1.09003 * 109.47114 * 59.99980 * 18 16 14 40 40 H 1.08994 * 109.47381 * 179.97438 * 18 16 14 41 41 H 0.96998 * 119.99891 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1828 2.2056 1.0910 5 6 1.8986 1.8666 2.4954 6 7 1.4426 0.7229 2.9378 7 7 1.2671 0.6380 4.1853 8 6 1.5485 1.6735 4.9084 9 6 1.4052 1.7607 6.4060 10 16 2.1181 2.9262 3.8886 11 7 2.6404 3.3527 0.6407 12 7 2.7711 3.3006 -0.6367 13 6 2.4111 2.1166 -1.0800 14 7 2.4244 1.6956 -2.3975 15 6 1.0695 1.3634 -2.8578 16 6 3.0428 2.7055 -3.2667 17 1 4.0378 2.9466 -2.8927 18 6 2.1805 3.9694 -3.2737 19 6 3.1510 2.1635 -4.6687 20 1 2.7954 1.1684 -4.8918 21 6 3.7028 2.9383 -5.6667 22 7 4.1354 4.1503 -5.3951 23 14 3.8362 2.2666 -7.4047 24 1 2.4804 1.9382 -7.9138 25 1 4.4615 3.2876 -8.2833 26 1 4.6733 1.0401 -7.3985 27 1 -0.3634 -1.0202 -0.1231 28 1 -0.3633 0.4035 0.9451 29 1 -0.3633 0.6168 -0.8221 30 1 1.8933 -0.5139 0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 2.3339 1.4414 6.8790 33 1 1.1877 2.7900 6.6909 34 1 0.5906 1.1136 6.7314 35 1 0.3991 2.1961 -2.6448 36 1 1.0863 1.1760 -3.9315 37 1 0.7178 0.4718 -2.3388 38 1 1.1855 3.7283 -3.6476 39 1 2.1024 4.3615 -2.2596 40 1 2.6396 4.7189 -3.9182 41 1 4.5233 4.6955 -6.0973 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647713328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:10 Heat of formation + Delta-G solvation = 166.748100 kcal Electronic energy + Delta-G solvation = -25256.263853 eV Core-core repulsion = 21722.198190 eV Total energy + Delta-G solvation = -3534.065664 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.127 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.68660 -41.23635 -37.51541 -35.64196 -33.63219 -32.81788 -30.87108 -30.51792 -28.83087 -28.43592 -26.02680 -25.24905 -25.02070 -24.01344 -22.23468 -21.75575 -19.79693 -19.68918 -18.89760 -17.06005 -16.42174 -16.41058 -15.85289 -15.56881 -15.35722 -14.63606 -14.59559 -14.13135 -13.70554 -13.55065 -13.45750 -13.26813 -13.12446 -12.91313 -12.47107 -12.37819 -11.63490 -11.47466 -11.41741 -11.20098 -10.96031 -10.85528 -10.79977 -10.72983 -10.56912 -10.40035 -10.27033 -10.14196 -9.96473 -9.90473 -9.87141 -8.95876 -8.92776 -8.45606 -7.53274 -6.08827 -4.16779 -0.09859 0.50267 1.10442 1.81945 2.47149 2.51592 3.19102 3.27372 3.32893 3.34121 3.46700 4.06479 4.25379 4.48353 4.54729 4.71023 4.88930 4.99488 4.99749 5.16811 5.22458 5.25475 5.39597 5.46408 5.53632 5.55315 5.69111 5.88242 5.93682 6.08027 6.17939 6.37794 6.61729 6.80894 7.00998 7.15761 7.32529 7.52172 7.66287 7.87613 8.21268 8.27631 8.33715 8.82005 8.99189 9.47973 10.97404 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.030267 B = 0.003121 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.890628 B = 8968.733961 C = 9613.661063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.106 3.894 3 N -0.462 5.462 4 C 0.190 3.810 5 C 0.098 3.902 6 N -0.250 5.250 7 N -0.262 5.262 8 C -0.026 4.026 9 C -0.072 4.072 10 S 0.208 5.792 11 N -0.239 5.239 12 N -0.301 5.301 13 C 0.411 3.589 14 N -0.450 5.450 15 C 0.027 3.973 16 C 0.227 3.773 17 H 0.054 0.946 18 C -0.175 4.175 19 C -0.518 4.518 20 H 0.065 0.935 21 C 0.065 3.935 22 N -0.883 5.883 23 Si 0.901 3.099 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.276 1.276 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.033 0.967 36 H 0.102 0.898 37 H 0.056 0.944 38 H 0.022 0.978 39 H 0.043 0.957 40 H 0.092 0.908 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.424 -5.436 19.165 21.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.016 4.016 3 N -0.158 5.158 4 C -0.076 4.076 5 C -0.179 4.179 6 N -0.091 5.091 7 N -0.101 5.101 8 C -0.304 4.304 9 C -0.132 4.132 10 S 0.451 5.549 11 N -0.086 5.086 12 N -0.149 5.149 13 C 0.055 3.945 14 N -0.173 5.173 15 C -0.119 4.119 16 C 0.123 3.877 17 H 0.072 0.928 18 C -0.234 4.234 19 C -0.556 4.556 20 H 0.083 0.917 21 C -0.138 4.138 22 N -0.521 5.521 23 Si 0.728 3.272 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.202 1.202 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.052 0.948 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.062 0.938 40 H 0.110 0.890 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.666 -4.651 18.987 20.653 hybrid contribution -0.699 -1.154 -1.056 1.714 sum -7.365 -5.805 17.931 20.235 Atomic orbital electron populations 1.22193 0.93973 1.03303 1.03045 1.21979 0.95797 0.78448 1.05401 1.46237 1.50473 1.13848 1.05280 1.20321 1.11341 0.90676 0.85231 1.26024 1.02931 0.93525 0.95452 1.72105 1.14511 1.17686 1.04802 1.71029 1.17013 1.24406 0.97693 1.29165 1.03238 0.93683 1.04334 1.20383 1.04665 1.04224 0.83977 1.84963 1.57938 1.15481 0.96472 1.74421 1.12954 1.16375 1.04832 1.75028 1.24832 1.13966 1.01080 1.23319 0.95544 0.86385 0.89219 1.59223 1.19621 1.43404 0.95089 1.22590 0.86532 0.99051 1.03764 1.19454 0.93815 0.84778 0.89615 0.92765 1.22479 0.98364 1.01837 1.00757 1.20964 1.41647 1.01103 0.91929 0.91739 1.24886 0.95050 0.94795 0.99048 1.69905 1.40044 1.08705 1.33405 0.86520 0.78334 0.78624 0.83676 1.20243 1.21218 1.20168 0.90256 0.91792 0.91734 0.88023 0.87922 0.89013 0.89576 0.88776 0.94792 0.87995 0.92505 0.95904 0.93813 0.88955 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 9.73 37.16 0.36 -1.60 16 2 C 0.11 1.45 5.49 -4.05 -0.02 1.42 16 3 N -0.46 -8.02 2.83 -114.82 -0.33 -8.35 16 4 C 0.19 3.34 7.98 -153.73 -1.23 2.11 16 5 C 0.10 1.45 7.58 -14.32 -0.11 1.34 16 6 N -0.25 -3.61 9.95 32.94 0.33 -3.28 16 7 N -0.26 -3.42 11.56 32.58 0.38 -3.04 16 8 C -0.03 -0.26 7.52 -13.30 -0.10 -0.36 16 9 C -0.07 -0.38 10.48 36.01 0.38 -0.01 16 10 S 0.21 2.30 23.27 -107.50 -2.50 -0.20 16 11 N -0.24 -4.80 12.24 32.51 0.40 -4.41 16 12 N -0.30 -6.70 9.09 30.30 0.28 -6.43 16 13 C 0.41 8.43 6.68 -318.97 -2.13 6.30 16 14 N -0.45 -9.53 4.72 -176.10 -0.83 -10.37 16 15 C 0.03 0.49 7.94 60.06 0.48 0.97 16 16 C 0.23 5.66 2.04 -68.86 -0.14 5.52 16 17 H 0.05 1.54 8.03 -51.93 -0.42 1.13 16 18 C -0.18 -4.31 8.28 37.16 0.31 -4.00 16 19 C -0.52 -13.51 7.77 -34.44 -0.27 -13.77 16 20 H 0.06 1.63 6.84 -52.49 -0.36 1.27 16 21 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 22 N -0.88 -24.68 11.32 55.43 0.63 -24.05 16 23 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.81 7.96 -51.93 -0.41 0.40 16 29 H 0.06 0.80 6.33 -51.93 -0.33 0.47 16 30 H 0.10 1.34 7.04 -51.93 -0.37 0.97 16 31 H 0.10 1.35 7.44 -51.93 -0.39 0.96 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.03 0.61 6.93 -51.93 -0.36 0.25 16 36 H 0.10 1.90 6.24 -51.92 -0.32 1.58 16 37 H 0.06 0.83 4.62 -51.93 -0.24 0.59 16 38 H 0.02 0.52 6.67 -51.93 -0.35 0.18 16 39 H 0.04 1.06 5.65 -51.93 -0.29 0.77 16 40 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -30.99 343.33 -9.04 -40.04 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -4.97 Total: -0.19 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -2.57 Total: -0.43 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: 0.85 Total: -59.92 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.50 Total: -0.20 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.99 -9.04 -40.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647713328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.786 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds