Wall clock time and date at job start Tue Mar 31 2020 12:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47618 * 2 1 4 4 C 1.37727 * 127.16627 * 83.72792 * 3 2 1 5 5 C 1.47243 * 126.49220 * 359.97438 * 4 3 2 6 6 N 1.30839 * 126.22878 * 0.02962 * 5 4 3 7 7 N 1.26259 * 116.18335 * 179.97438 * 6 5 4 8 8 C 1.29394 * 117.91387 * 0.02562 * 7 6 5 9 9 C 1.50701 * 125.51634 * 180.02562 * 8 7 6 10 10 S 1.71277 * 108.95968 * 359.72550 * 8 7 6 11 11 N 1.31452 * 107.01336 * 180.02562 * 4 3 2 12 12 N 1.28512 * 109.90771 * 359.97438 * 11 4 3 13 13 C 1.31458 * 110.11132 * 359.72416 * 12 11 4 14 14 N 1.38322 * 126.35153 * 180.29584 * 13 12 11 15 15 C 1.46896 * 111.00306 * 242.30557 * 14 13 12 16 16 C 1.46905 * 111.00005 * 6.26221 * 14 13 12 17 17 H 1.08998 * 109.47024 * 54.99460 * 16 14 13 18 18 C 1.53000 * 109.47045 * 294.99773 * 16 14 13 19 19 C 1.50700 * 109.47439 * 174.99597 * 16 14 13 20 20 H 1.08001 * 119.99580 * 0.02562 * 19 16 14 21 21 C 1.37870 * 120.00149 * 179.97438 * 19 16 14 22 22 N 1.31520 * 119.99949 * 0.02562 * 21 19 16 23 23 Si 1.86801 * 120.00038 * 180.02562 * 21 19 16 24 24 H 1.48502 * 109.47065 * 60.00250 * 23 21 19 25 25 H 1.48503 * 109.47087 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47052 * 299.99723 * 23 21 19 27 27 H 1.08996 * 109.47366 * 173.11773 * 1 2 3 28 28 H 1.08999 * 109.47118 * 293.11990 * 1 2 3 29 29 H 1.09005 * 109.47107 * 53.12106 * 1 2 3 30 30 H 1.08998 * 109.47273 * 120.00395 * 2 1 3 31 31 H 1.09002 * 109.46704 * 240.00059 * 2 1 3 32 32 H 1.08999 * 109.46826 * 89.97887 * 9 8 7 33 33 H 1.08997 * 109.47273 * 209.97289 * 9 8 7 34 34 H 1.09002 * 109.47353 * 329.98155 * 9 8 7 35 35 H 1.09005 * 109.46855 * 51.82871 * 15 14 13 36 36 H 1.09007 * 109.46907 * 171.82119 * 15 14 13 37 37 H 1.08995 * 109.47059 * 291.82072 * 15 14 13 38 38 H 1.08996 * 109.47181 * 300.00470 * 18 16 14 39 39 H 1.09003 * 109.47114 * 59.99980 * 18 16 14 40 40 H 1.08994 * 109.47381 * 179.97438 * 18 16 14 41 41 H 0.96998 * 119.99891 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1828 2.2056 1.0910 5 6 1.8986 1.8666 2.4954 6 7 1.4426 0.7229 2.9378 7 7 1.2671 0.6380 4.1853 8 6 1.5485 1.6735 4.9084 9 6 1.4052 1.7607 6.4060 10 16 2.1181 2.9262 3.8886 11 7 2.6404 3.3527 0.6407 12 7 2.7711 3.3006 -0.6367 13 6 2.4111 2.1166 -1.0800 14 7 2.4244 1.6956 -2.3975 15 6 1.0695 1.3634 -2.8578 16 6 3.0428 2.7055 -3.2667 17 1 4.0378 2.9466 -2.8927 18 6 2.1805 3.9694 -3.2737 19 6 3.1510 2.1635 -4.6687 20 1 2.7954 1.1684 -4.8918 21 6 3.7028 2.9383 -5.6667 22 7 4.1354 4.1503 -5.3951 23 14 3.8362 2.2666 -7.4047 24 1 2.4804 1.9382 -7.9138 25 1 4.4615 3.2876 -8.2833 26 1 4.6733 1.0401 -7.3985 27 1 -0.3634 -1.0202 -0.1231 28 1 -0.3633 0.4035 0.9451 29 1 -0.3633 0.6168 -0.8221 30 1 1.8933 -0.5139 0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 2.3339 1.4414 6.8790 33 1 1.1877 2.7900 6.6909 34 1 0.5906 1.1136 6.7314 35 1 0.3991 2.1961 -2.6448 36 1 1.0863 1.1760 -3.9315 37 1 0.7178 0.4718 -2.3388 38 1 1.1855 3.7283 -3.6476 39 1 2.1024 4.3615 -2.2596 40 1 2.6396 4.7189 -3.9182 41 1 4.5233 4.6955 -6.0973 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647713328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:09 Heat of formation + Delta-G solvation = 148.277366 kcal Electronic energy + Delta-G solvation = -25257.064804 eV Core-core repulsion = 21722.198190 eV Total energy + Delta-G solvation = -3534.866615 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.127 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.12787 -42.23903 -39.20636 -36.93559 -34.96952 -34.30965 -32.03430 -31.77887 -30.66692 -29.54732 -27.37626 -27.16050 -26.22967 -25.17475 -23.70142 -23.13136 -21.36624 -20.81568 -19.96543 -18.51153 -18.09351 -17.73288 -17.24200 -16.88137 -16.79159 -16.34943 -15.81252 -15.25499 -15.08700 -14.84450 -14.50666 -14.36497 -14.17234 -13.95965 -13.58331 -13.41823 -13.39554 -13.01788 -12.94666 -12.68720 -12.59519 -12.47474 -12.38763 -12.07623 -12.00419 -11.83431 -11.67252 -11.58252 -11.39745 -11.22464 -10.91924 -10.78309 -10.50762 -10.34275 -9.12242 -8.11732 -6.26869 -1.10997 -0.46527 0.17853 0.59783 1.14313 1.28233 1.47009 1.48931 1.56425 1.78915 2.31133 2.43125 2.90634 3.18128 3.28548 3.48255 3.60576 3.90917 3.97067 4.06343 4.16724 4.30020 4.39120 4.43990 4.53769 4.65329 4.68135 4.70847 4.73733 4.89711 4.97324 5.07935 5.10065 5.13760 5.15718 5.27610 5.54053 5.59038 5.74530 5.95570 6.19971 6.47459 6.81200 7.28811 7.41241 7.49784 8.94651 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.030267 B = 0.003121 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.890628 B = 8968.733961 C = 9613.661063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.100 3.900 3 N -0.456 5.456 4 C 0.215 3.785 5 C 0.049 3.951 6 N -0.245 5.245 7 N -0.292 5.292 8 C 0.001 3.999 9 C -0.077 4.077 10 S 0.249 5.751 11 N -0.273 5.273 12 N -0.343 5.343 13 C 0.393 3.607 14 N -0.453 5.453 15 C 0.031 3.969 16 C 0.239 3.761 17 H 0.007 0.993 18 C -0.158 4.158 19 C -0.527 4.527 20 H 0.073 0.927 21 C 0.015 3.985 22 N -0.917 5.917 23 Si 0.968 3.032 24 H -0.265 1.265 25 H -0.288 1.288 26 H -0.271 1.271 27 H 0.110 0.890 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.027 0.973 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.030 0.970 39 H 0.041 0.959 40 H 0.064 0.936 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.800 -7.282 21.169 24.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.021 4.021 3 N -0.152 5.152 4 C -0.053 4.053 5 C -0.228 4.228 6 N -0.087 5.087 7 N -0.132 5.132 8 C -0.276 4.276 9 C -0.138 4.138 10 S 0.493 5.507 11 N -0.118 5.118 12 N -0.191 5.191 13 C 0.036 3.964 14 N -0.176 5.176 15 C -0.115 4.115 16 C 0.134 3.866 17 H 0.025 0.975 18 C -0.217 4.217 19 C -0.565 4.565 20 H 0.091 0.909 21 C -0.185 4.185 22 N -0.556 5.556 23 Si 0.793 3.207 24 H -0.189 1.189 25 H -0.214 1.214 26 H -0.196 1.196 27 H 0.129 0.871 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.124 0.876 35 H 0.046 0.954 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.059 -6.508 21.014 23.428 hybrid contribution -0.316 -0.621 -1.291 1.467 sum -8.374 -7.129 19.723 22.582 Atomic orbital electron populations 1.22152 0.92188 1.05046 1.02219 1.22297 0.97185 0.76546 1.06042 1.46429 1.49693 1.14792 1.04265 1.20770 1.08341 0.89723 0.86439 1.25886 1.06404 0.95455 0.95082 1.72078 1.13120 1.17716 1.05824 1.71064 1.19168 1.25625 0.97297 1.30035 0.99355 0.92162 1.06081 1.20764 1.06214 1.06369 0.80403 1.84873 1.56728 1.14592 0.94515 1.74311 1.15473 1.17929 1.04091 1.74865 1.26133 1.15661 1.02408 1.23124 0.97001 0.86823 0.89442 1.59120 1.21277 1.42118 0.95115 1.22660 0.84904 1.00278 1.03707 1.19018 0.91957 0.85776 0.89852 0.97473 1.22257 0.98333 1.01163 0.99949 1.21274 1.41334 1.01429 0.92457 0.90868 1.25752 0.94670 0.94954 1.03132 1.70068 1.40946 1.10033 1.34532 0.85456 0.78758 0.77815 0.78656 1.18929 1.21402 1.19636 0.87100 0.92710 0.92413 0.87357 0.87244 0.86810 0.86949 0.87576 0.95397 0.88673 0.88928 0.95116 0.93981 0.91720 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 9.73 71.98 0.70 -2.70 16 2 C 0.10 2.60 5.49 86.38 0.47 3.08 16 3 N -0.46 -15.91 2.83 -517.19 -1.47 -17.38 16 4 C 0.21 7.64 7.98 135.93 1.08 8.73 16 5 C 0.05 1.41 7.58 87.21 0.66 2.07 16 6 N -0.25 -6.72 9.95 -49.70 -0.49 -7.22 16 7 N -0.29 -6.93 11.56 -50.82 -0.59 -7.52 16 8 C 0.00 0.02 7.52 88.47 0.67 0.68 16 9 C -0.08 -0.49 10.48 71.24 0.75 0.26 16 10 S 0.25 5.03 23.27 -56.49 -1.31 3.72 16 11 N -0.27 -11.38 12.24 -51.06 -0.62 -12.00 16 12 N -0.34 -16.07 9.09 -58.05 -0.53 -16.60 16 13 C 0.39 16.64 6.68 260.15 1.74 18.37 16 14 N -0.45 -19.64 4.72 -711.07 -3.36 -22.99 16 15 C 0.03 1.09 7.94 127.69 1.01 2.10 16 16 C 0.24 12.46 2.04 44.17 0.09 12.55 16 17 H 0.01 0.44 8.03 -2.39 -0.02 0.42 16 18 C -0.16 -8.13 8.28 71.98 0.60 -7.53 16 19 C -0.53 -27.98 7.77 25.60 0.20 -27.78 16 20 H 0.07 3.68 6.84 -2.91 -0.02 3.66 16 21 C 0.01 0.79 5.30 84.65 0.45 1.24 16 22 N -0.92 -53.06 11.32 21.45 0.24 -52.81 16 23 Si 0.97 42.37 29.54 68.60 2.03 44.40 16 24 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 1.29 7.96 -2.39 -0.02 1.27 16 29 H 0.06 1.33 6.33 -2.38 -0.02 1.31 16 30 H 0.11 2.70 7.04 -2.39 -0.02 2.68 16 31 H 0.11 2.70 7.44 -2.39 -0.02 2.68 16 32 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.03 1.01 6.93 -2.38 -0.02 0.99 16 36 H 0.09 3.50 6.24 -2.38 -0.01 3.48 16 37 H 0.09 2.57 4.62 -2.39 -0.01 2.56 16 38 H 0.03 1.47 6.67 -2.39 -0.02 1.45 16 39 H 0.04 2.15 5.65 -2.39 -0.01 2.14 16 40 H 0.06 3.68 6.07 -2.39 -0.01 3.67 16 41 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -70.96 343.33 3.39 -67.57 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.08 Total: 9.78 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 8.42 Total: 11.07 kcal Atomic # 7 Polarization: -129.71 SS G_CDS: -6.82 Total: -136.53 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 16 Polarization: 5.03 SS G_CDS: -1.31 Total: 3.72 kcal Total: -70.96 3.39 -67.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647713328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.847 kcal (2) G-P(sol) polarization free energy of solvation -70.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds