Wall clock time and date at job start Tue Mar 31 2020 12:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47168 * 2 1 4 4 C 1.37732 * 127.16399 * 93.91974 * 3 2 1 5 5 C 1.47248 * 126.49088 * 0.24166 * 4 3 2 6 6 N 1.30839 * 126.23361 * 359.72958 * 5 4 3 7 7 N 1.26250 * 116.18489 * 180.02562 * 6 5 4 8 8 C 1.29392 * 117.91745 * 0.02562 * 7 6 5 9 9 C 1.50706 * 125.51915 * 179.97438 * 8 7 6 10 10 S 1.71272 * 108.95801 * 359.72839 * 8 7 6 11 11 N 1.31446 * 107.01467 * 179.97438 * 4 3 2 12 12 N 1.28515 * 109.90324 * 0.02562 * 11 4 3 13 13 C 1.31451 * 110.11593 * 359.97438 * 12 11 4 14 14 N 1.38331 * 126.35125 * 180.02562 * 13 12 11 15 15 C 1.46897 * 110.99858 * 295.10644 * 14 13 12 16 16 C 1.46905 * 110.99465 * 59.05556 * 14 13 12 17 17 H 1.08996 * 109.47643 * 299.99790 * 16 14 13 18 18 C 1.52998 * 109.47040 * 60.00608 * 16 14 13 19 19 C 1.50707 * 109.46519 * 179.97438 * 16 14 13 20 20 H 1.07995 * 120.00088 * 0.02562 * 19 16 14 21 21 C 1.37875 * 119.99787 * 179.97438 * 19 16 14 22 22 N 1.31513 * 120.00139 * 180.02562 * 21 19 16 23 23 Si 1.86807 * 120.00138 * 0.02562 * 21 19 16 24 24 H 1.48504 * 109.47143 * 89.99225 * 23 21 19 25 25 H 1.48489 * 109.47246 * 209.99898 * 23 21 19 26 26 H 1.48507 * 109.46668 * 329.99737 * 23 21 19 27 27 H 1.09007 * 109.46587 * 295.08926 * 1 2 3 28 28 H 1.08997 * 109.47309 * 55.08508 * 1 2 3 29 29 H 1.08999 * 109.47624 * 175.09253 * 1 2 3 30 30 H 1.09003 * 109.46553 * 240.00354 * 2 1 3 31 31 H 1.08996 * 109.46865 * 120.00984 * 2 1 3 32 32 H 1.08993 * 109.46830 * 89.97668 * 9 8 7 33 33 H 1.09004 * 109.47060 * 209.97820 * 9 8 7 34 34 H 1.08997 * 109.46947 * 329.97621 * 9 8 7 35 35 H 1.08996 * 109.47507 * 66.46398 * 15 14 13 36 36 H 1.09000 * 109.47338 * 186.46369 * 15 14 13 37 37 H 1.09005 * 109.47194 * 306.45971 * 15 14 13 38 38 H 1.09001 * 109.47023 * 299.99434 * 18 16 14 39 39 H 1.08996 * 109.47571 * 59.99137 * 18 16 14 40 40 H 1.09005 * 109.46924 * 179.97438 * 18 16 14 41 41 H 0.97001 * 119.99858 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3665 2.1406 1.0950 5 6 2.3241 1.7161 2.5044 6 7 1.9429 0.5458 2.9484 7 7 1.9816 0.3853 4.2001 8 6 2.3881 1.3765 4.9257 9 6 2.5009 1.3730 6.4285 10 16 2.7835 2.6908 3.9011 11 7 2.7492 3.3142 0.6433 12 7 2.6643 3.3383 -0.6389 13 6 2.2233 2.1830 -1.0846 14 7 2.0072 1.8431 -2.4080 15 6 0.9325 2.6568 -2.9917 16 6 3.2441 1.9645 -3.1912 17 1 3.6019 2.9931 -3.1485 18 6 4.3082 1.0299 -2.6122 19 6 2.9703 1.5864 -4.6242 20 1 1.9768 1.2864 -4.9231 21 6 3.9879 1.6244 -5.5537 22 7 3.7489 1.2949 -6.8042 23 14 5.7062 2.1439 -5.0367 24 1 6.4769 0.9488 -4.6088 25 1 6.3932 2.7918 -6.1827 26 1 5.6143 3.1041 -3.9075 27 1 -0.3633 0.4358 0.9308 28 1 -0.3634 0.5882 -0.8427 29 1 -0.3634 -1.0239 -0.0879 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5140 0.8899 32 1 3.4941 1.0293 6.7174 33 1 2.3414 2.3826 6.8072 34 1 1.7489 0.7047 6.8478 35 1 1.2534 3.6970 -3.0469 36 1 0.7048 2.2932 -3.9937 37 1 0.0417 2.5839 -2.3677 38 1 4.5063 1.3029 -1.5757 39 1 3.9504 0.0012 -2.6549 40 1 5.2258 1.1196 -3.1937 41 1 4.4649 1.3214 -7.4581 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647713329.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:12 Heat of formation + Delta-G solvation = 167.612519 kcal Electronic energy + Delta-G solvation = -25331.093198 eV Core-core repulsion = 21797.065018 eV Total energy + Delta-G solvation = -3534.028180 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.127 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.83796 -41.34922 -37.44037 -35.61668 -33.72277 -32.87432 -31.08406 -30.55728 -30.18267 -28.43751 -26.10948 -25.36547 -24.61203 -24.03294 -22.48435 -21.83191 -19.90723 -19.86523 -18.98966 -17.22258 -16.83408 -16.55000 -15.98588 -15.81772 -15.27988 -14.89623 -14.52817 -14.04182 -13.82653 -13.58379 -13.54464 -13.38380 -13.12689 -12.99424 -12.71603 -12.33791 -12.27477 -11.89587 -11.51476 -11.39460 -11.21156 -10.93193 -10.87260 -10.75493 -10.68444 -10.58114 -10.38759 -10.24564 -10.01748 -9.99585 -9.65583 -9.32692 -8.69978 -8.59662 -8.07493 -6.19421 -4.20805 -0.21702 0.38943 0.99325 1.67257 2.34686 2.36678 2.98012 3.20676 3.32468 3.33662 3.36004 3.95794 4.23640 4.30598 4.44637 4.67602 4.87746 4.93536 5.04378 5.09087 5.12452 5.30929 5.31420 5.40169 5.45586 5.62225 5.71011 5.87578 6.07506 6.11558 6.15813 6.17560 6.23635 6.34047 6.57441 6.64545 6.74551 6.99984 7.32615 7.52712 7.80959 8.17296 8.42874 8.69483 8.83004 9.40271 10.92276 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.022982 B = 0.003489 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.031300 B = 8022.356902 C = 8444.912501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.103 3.897 3 N -0.439 5.439 4 C 0.204 3.796 5 C 0.089 3.911 6 N -0.243 5.243 7 N -0.261 5.261 8 C -0.021 4.021 9 C -0.073 4.073 10 S 0.213 5.787 11 N -0.246 5.246 12 N -0.307 5.307 13 C 0.402 3.598 14 N -0.462 5.462 15 C 0.049 3.951 16 C 0.195 3.805 17 H 0.024 0.976 18 C -0.147 4.147 19 C -0.514 4.514 20 H 0.088 0.912 21 C 0.079 3.921 22 N -0.892 5.892 23 Si 0.878 3.122 24 H -0.277 1.277 25 H -0.293 1.293 26 H -0.264 1.264 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.040 0.960 36 H 0.099 0.901 37 H 0.048 0.952 38 H 0.021 0.979 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.301 -0.172 23.404 23.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.019 4.019 3 N -0.132 5.132 4 C -0.061 4.061 5 C -0.188 4.188 6 N -0.085 5.085 7 N -0.101 5.101 8 C -0.299 4.299 9 C -0.134 4.134 10 S 0.456 5.544 11 N -0.093 5.093 12 N -0.154 5.154 13 C 0.046 3.954 14 N -0.188 5.188 15 C -0.097 4.097 16 C 0.089 3.911 17 H 0.041 0.959 18 C -0.205 4.205 19 C -0.552 4.552 20 H 0.106 0.894 21 C -0.124 4.124 22 N -0.529 5.529 23 Si 0.708 3.292 24 H -0.204 1.204 25 H -0.220 1.220 26 H -0.189 1.189 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.058 0.942 36 H 0.118 0.882 37 H 0.067 0.933 38 H 0.040 0.960 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.998 0.358 23.176 23.521 hybrid contribution 0.819 -0.531 0.074 0.979 sum -3.179 -0.173 23.249 23.466 Atomic orbital electron populations 1.22029 0.93610 1.03441 1.02555 1.22084 0.96169 0.77875 1.05764 1.46519 1.47476 1.14016 1.05148 1.20458 1.09412 0.91098 0.85174 1.26016 1.03666 0.93790 0.95346 1.72093 1.15914 1.15624 1.04831 1.71049 1.15827 1.25742 0.97460 1.29226 1.02598 0.93659 1.04430 1.20411 1.04795 1.04471 0.83694 1.84947 1.58237 1.15294 0.95880 1.74415 1.15875 1.14682 1.04372 1.74821 1.20019 1.18726 1.01845 1.22866 0.96893 0.85815 0.89836 1.59014 1.11689 1.54201 0.93939 1.22292 0.90826 0.95592 1.01034 1.19892 0.83043 0.95354 0.92813 0.95866 1.22207 0.99340 1.01500 0.97454 1.20816 0.98759 1.46677 0.88946 0.89402 1.24815 0.98513 0.94376 0.94739 1.69847 1.33269 1.47667 1.02101 0.86987 0.85104 0.79178 0.77933 1.20432 1.22015 1.18909 0.92513 0.91493 0.90175 0.87510 0.87680 0.88883 0.89490 0.88634 0.94170 0.88215 0.93328 0.96002 0.92041 0.93030 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 10.24 37.16 0.38 -1.54 16 2 C 0.10 1.45 6.62 -4.04 -0.03 1.42 16 3 N -0.44 -7.46 2.83 -114.82 -0.33 -7.79 16 4 C 0.20 3.45 7.98 -153.73 -1.23 2.22 16 5 C 0.09 1.26 7.57 -14.31 -0.11 1.16 16 6 N -0.24 -3.43 9.85 32.94 0.32 -3.10 16 7 N -0.26 -3.30 11.56 32.58 0.38 -2.93 16 8 C -0.02 -0.20 7.52 -13.30 -0.10 -0.30 16 9 C -0.07 -0.35 10.48 36.01 0.38 0.02 16 10 S 0.21 2.20 23.27 -107.50 -2.50 -0.30 16 11 N -0.25 -4.64 12.24 32.51 0.40 -4.24 16 12 N -0.31 -6.39 12.11 30.30 0.37 -6.02 16 13 C 0.40 7.84 5.01 -318.98 -1.60 6.24 16 14 N -0.46 -9.41 4.65 -176.10 -0.82 -10.22 16 15 C 0.05 0.92 9.13 60.06 0.55 1.47 16 16 C 0.19 4.57 1.58 -68.86 -0.11 4.46 16 17 H 0.02 0.60 7.13 -51.93 -0.37 0.23 16 18 C -0.15 -3.30 8.55 37.16 0.32 -2.98 16 19 C -0.51 -13.58 8.53 -34.44 -0.29 -13.87 16 20 H 0.09 2.45 6.64 -52.49 -0.35 2.10 16 21 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 22 N -0.89 -26.05 13.96 55.43 0.77 -25.27 16 23 Si 0.88 21.53 24.37 -169.99 -4.14 17.38 16 24 H -0.28 -6.63 6.87 56.52 0.39 -6.24 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 26 H -0.26 -6.44 6.53 56.52 0.37 -6.07 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.11 1.53 8.14 -51.93 -0.42 1.10 16 31 H 0.11 1.41 6.46 -51.93 -0.34 1.07 16 32 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.10 1.92 6.33 -51.93 -0.33 1.59 16 37 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 38 H 0.02 0.46 7.22 -51.93 -0.38 0.08 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.05 1.19 3.27 -51.93 -0.17 1.02 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 350.75 15.07 5.29 5.29 Total: -1.00 -31.73 350.75 -7.53 -39.27 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -5.33 Total: -2.43 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.93 Total: 0.38 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: 1.10 Total: -59.58 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.14 Total: 17.38 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.50 Total: -0.30 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.73 -7.53 -39.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647713329.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.879 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds