Wall clock time and date at job start Tue Mar 31 2020 12:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47168 * 2 1 4 4 C 1.37732 * 127.16399 * 93.91974 * 3 2 1 5 5 C 1.47248 * 126.49088 * 0.24166 * 4 3 2 6 6 N 1.30839 * 126.23361 * 359.72958 * 5 4 3 7 7 N 1.26250 * 116.18489 * 180.02562 * 6 5 4 8 8 C 1.29392 * 117.91745 * 0.02562 * 7 6 5 9 9 C 1.50706 * 125.51915 * 179.97438 * 8 7 6 10 10 S 1.71272 * 108.95801 * 359.72839 * 8 7 6 11 11 N 1.31446 * 107.01467 * 179.97438 * 4 3 2 12 12 N 1.28515 * 109.90324 * 0.02562 * 11 4 3 13 13 C 1.31451 * 110.11593 * 359.97438 * 12 11 4 14 14 N 1.38331 * 126.35125 * 180.02562 * 13 12 11 15 15 C 1.46897 * 110.99858 * 295.10644 * 14 13 12 16 16 C 1.46905 * 110.99465 * 59.05556 * 14 13 12 17 17 H 1.08996 * 109.47643 * 299.99790 * 16 14 13 18 18 C 1.52998 * 109.47040 * 60.00608 * 16 14 13 19 19 C 1.50707 * 109.46519 * 179.97438 * 16 14 13 20 20 H 1.07995 * 120.00088 * 0.02562 * 19 16 14 21 21 C 1.37875 * 119.99787 * 179.97438 * 19 16 14 22 22 N 1.31513 * 120.00139 * 180.02562 * 21 19 16 23 23 Si 1.86807 * 120.00138 * 0.02562 * 21 19 16 24 24 H 1.48504 * 109.47143 * 89.99225 * 23 21 19 25 25 H 1.48489 * 109.47246 * 209.99898 * 23 21 19 26 26 H 1.48507 * 109.46668 * 329.99737 * 23 21 19 27 27 H 1.09007 * 109.46587 * 295.08926 * 1 2 3 28 28 H 1.08997 * 109.47309 * 55.08508 * 1 2 3 29 29 H 1.08999 * 109.47624 * 175.09253 * 1 2 3 30 30 H 1.09003 * 109.46553 * 240.00354 * 2 1 3 31 31 H 1.08996 * 109.46865 * 120.00984 * 2 1 3 32 32 H 1.08993 * 109.46830 * 89.97668 * 9 8 7 33 33 H 1.09004 * 109.47060 * 209.97820 * 9 8 7 34 34 H 1.08997 * 109.46947 * 329.97621 * 9 8 7 35 35 H 1.08996 * 109.47507 * 66.46398 * 15 14 13 36 36 H 1.09000 * 109.47338 * 186.46369 * 15 14 13 37 37 H 1.09005 * 109.47194 * 306.45971 * 15 14 13 38 38 H 1.09001 * 109.47023 * 299.99434 * 18 16 14 39 39 H 1.08996 * 109.47571 * 59.99137 * 18 16 14 40 40 H 1.09005 * 109.46924 * 179.97438 * 18 16 14 41 41 H 0.97001 * 119.99858 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3665 2.1406 1.0950 5 6 2.3241 1.7161 2.5044 6 7 1.9429 0.5458 2.9484 7 7 1.9816 0.3853 4.2001 8 6 2.3881 1.3765 4.9257 9 6 2.5009 1.3730 6.4285 10 16 2.7835 2.6908 3.9011 11 7 2.7492 3.3142 0.6433 12 7 2.6643 3.3383 -0.6389 13 6 2.2233 2.1830 -1.0846 14 7 2.0072 1.8431 -2.4080 15 6 0.9325 2.6568 -2.9917 16 6 3.2441 1.9645 -3.1912 17 1 3.6019 2.9931 -3.1485 18 6 4.3082 1.0299 -2.6122 19 6 2.9703 1.5864 -4.6242 20 1 1.9768 1.2864 -4.9231 21 6 3.9879 1.6244 -5.5537 22 7 3.7489 1.2949 -6.8042 23 14 5.7062 2.1439 -5.0367 24 1 6.4769 0.9488 -4.6088 25 1 6.3932 2.7918 -6.1827 26 1 5.6143 3.1041 -3.9075 27 1 -0.3633 0.4358 0.9308 28 1 -0.3634 0.5882 -0.8427 29 1 -0.3634 -1.0239 -0.0879 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5140 0.8899 32 1 3.4941 1.0293 6.7174 33 1 2.3414 2.3826 6.8072 34 1 1.7489 0.7047 6.8478 35 1 1.2534 3.6970 -3.0469 36 1 0.7048 2.2932 -3.9937 37 1 0.0417 2.5839 -2.3677 38 1 4.5063 1.3029 -1.5757 39 1 3.9504 0.0012 -2.6549 40 1 5.2258 1.1196 -3.1937 41 1 4.4649 1.3214 -7.4581 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647713329.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:12 Heat of formation + Delta-G solvation = 146.802198 kcal Electronic energy + Delta-G solvation = -25331.995601 eV Core-core repulsion = 21797.065018 eV Total energy + Delta-G solvation = -3534.930583 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.127 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.21221 -42.28629 -39.11049 -36.86034 -35.02473 -34.39421 -32.52503 -31.93636 -31.50118 -29.49379 -27.68216 -26.59737 -26.20032 -25.20265 -23.83325 -23.24911 -21.39506 -20.92559 -20.00415 -19.01316 -18.27494 -17.84568 -17.22346 -17.08301 -16.79349 -16.50789 -15.66207 -15.45013 -15.20001 -14.86955 -14.57004 -14.39669 -14.28850 -14.14141 -13.98996 -13.66948 -13.49970 -13.39744 -13.00265 -12.80846 -12.68969 -12.56157 -12.45705 -12.22725 -12.02949 -11.71715 -11.65677 -11.58249 -11.40485 -11.30324 -11.22224 -10.80965 -10.79602 -9.90604 -9.75081 -8.33483 -6.37427 -1.16314 -0.50618 0.13656 0.48360 1.07804 1.18045 1.24888 1.34013 1.41331 1.68610 2.22976 2.26385 2.75031 3.00929 3.24416 3.42605 3.65287 3.83649 3.99137 4.01849 4.12901 4.32693 4.34450 4.38731 4.39582 4.48153 4.51689 4.64306 4.66437 4.70964 4.74495 4.80411 4.96637 5.02296 5.09403 5.12074 5.15906 5.35277 5.42902 5.73378 6.06389 6.45720 6.67884 7.24418 7.26368 7.30881 8.81306 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.022982 B = 0.003489 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.031300 B = 8022.356902 C = 8444.912501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.100 3.900 3 N -0.437 5.437 4 C 0.227 3.773 5 C 0.041 3.959 6 N -0.245 5.245 7 N -0.293 5.293 8 C 0.003 3.997 9 C -0.078 4.078 10 S 0.261 5.739 11 N -0.271 5.271 12 N -0.336 5.336 13 C 0.385 3.615 14 N -0.458 5.458 15 C 0.054 3.946 16 C 0.202 3.798 17 H 0.003 0.997 18 C -0.139 4.139 19 C -0.507 4.507 20 H 0.065 0.935 21 C 0.032 3.968 22 N -0.933 5.933 23 Si 0.928 3.072 24 H -0.264 1.264 25 H -0.291 1.291 26 H -0.264 1.264 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.029 0.971 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.029 0.971 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.997 -0.572 27.047 27.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 N -0.129 5.129 4 C -0.041 4.041 5 C -0.236 4.236 6 N -0.087 5.087 7 N -0.133 5.133 8 C -0.274 4.274 9 C -0.139 4.139 10 S 0.504 5.496 11 N -0.117 5.117 12 N -0.183 5.183 13 C 0.028 3.972 14 N -0.184 5.184 15 C -0.093 4.093 16 C 0.095 3.905 17 H 0.020 0.980 18 C -0.196 4.196 19 C -0.545 4.545 20 H 0.083 0.917 21 C -0.167 4.167 22 N -0.572 5.572 23 Si 0.756 3.244 24 H -0.190 1.190 25 H -0.219 1.219 26 H -0.189 1.189 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.124 0.876 35 H 0.048 0.952 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.048 0.952 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.701 -0.038 26.840 27.094 hybrid contribution 0.635 -0.426 -0.754 1.074 sum -3.067 -0.463 26.086 26.269 Atomic orbital electron populations 1.21979 0.92050 1.04797 1.01887 1.22295 0.97415 0.76457 1.05910 1.46667 1.47025 1.14655 1.04521 1.20871 1.06685 0.90241 0.86256 1.25914 1.07129 0.95499 0.95088 1.72062 1.14928 1.15828 1.05888 1.71077 1.18111 1.26987 0.97078 1.30074 0.98853 0.92302 1.06208 1.20784 1.06288 1.06613 0.80181 1.84816 1.56731 1.14319 0.93685 1.74333 1.17852 1.15938 1.03606 1.74708 1.20876 1.19710 1.02978 1.22594 0.98661 0.86331 0.89605 1.58878 1.10517 1.54575 0.94464 1.22262 0.91432 0.94660 1.00973 1.19601 0.84813 0.94262 0.91807 0.97977 1.22068 0.98459 1.01491 0.97607 1.20968 0.97670 1.45248 0.90611 0.91706 1.25454 1.01865 0.94696 0.94691 1.69952 1.34455 1.49608 1.03191 0.86165 0.81459 0.79256 0.77500 1.18995 1.21870 1.18891 0.92708 0.92591 0.87688 0.87894 0.86860 0.86774 0.86787 0.87596 0.95177 0.89374 0.90694 0.95224 0.91335 0.93700 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 10.24 71.98 0.74 -2.68 16 2 C 0.10 2.71 6.62 86.38 0.57 3.28 16 3 N -0.44 -14.62 2.83 -517.18 -1.47 -16.09 16 4 C 0.23 7.50 7.98 135.93 1.08 8.58 16 5 C 0.04 1.11 7.57 87.21 0.66 1.77 16 6 N -0.24 -6.48 9.85 -49.69 -0.49 -6.97 16 7 N -0.29 -6.68 11.56 -50.82 -0.59 -7.27 16 8 C 0.00 0.04 7.52 88.47 0.67 0.71 16 9 C -0.08 -0.40 10.48 71.24 0.75 0.34 16 10 S 0.26 4.70 23.27 -56.49 -1.31 3.39 16 11 N -0.27 -10.19 12.24 -51.06 -0.62 -10.82 16 12 N -0.34 -14.09 12.11 -58.05 -0.70 -14.80 16 13 C 0.39 15.05 5.01 260.15 1.30 16.35 16 14 N -0.46 -18.87 4.65 -711.07 -3.30 -22.17 16 15 C 0.05 2.03 9.13 127.69 1.17 3.20 16 16 C 0.20 9.58 1.58 44.17 0.07 9.65 16 17 H 0.00 0.13 7.13 -2.39 -0.02 0.12 16 18 C -0.14 -6.13 8.55 71.98 0.62 -5.52 16 19 C -0.51 -27.36 8.53 25.60 0.22 -27.14 16 20 H 0.06 3.74 6.64 -2.91 -0.02 3.73 16 21 C 0.03 1.82 5.45 84.65 0.46 2.28 16 22 N -0.93 -55.60 13.96 21.45 0.30 -55.30 16 23 Si 0.93 44.57 24.37 68.60 1.67 46.24 16 24 H -0.26 -12.03 6.87 99.48 0.68 -11.35 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 26 H -0.26 -12.59 6.53 99.48 0.65 -11.94 16 27 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.11 2.89 6.46 -2.39 -0.02 2.88 16 32 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.11 0.05 8.14 -2.39 -0.02 0.04 16 34 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.09 3.52 6.33 -2.39 -0.02 3.50 16 37 H 0.07 2.41 8.10 -2.38 -0.02 2.39 16 38 H 0.03 1.24 7.22 -2.39 -0.02 1.22 16 39 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 40 H 0.04 2.03 3.27 -2.38 -0.01 2.02 16 41 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -69.87 350.75 2.76 -67.10 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 0.98 Total: 5.87 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 8.30 Total: 10.81 kcal Atomic # 7 Polarization: -126.54 SS G_CDS: -6.88 Total: -133.42 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.67 Total: 46.24 kcal Atomic # 16 Polarization: 4.70 SS G_CDS: -1.31 Total: 3.39 kcal Total: -69.87 2.76 -67.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647713329.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.906 kcal (2) G-P(sol) polarization free energy of solvation -69.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds