Wall clock time and date at job start Tue Mar 31 2020 12:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47565 * 2 1 4 4 C 1.37706 * 127.19070 * 83.08202 * 3 2 1 5 5 C 1.47131 * 126.51486 * 0.23211 * 4 3 2 6 6 C 1.35121 * 126.03653 * 194.42695 * 5 4 3 7 7 N 1.31591 * 114.25778 * 179.85151 * 6 5 4 8 8 C 1.29868 * 117.07622 * 0.44656 * 7 6 5 9 9 N 1.38371 * 124.83315 * 179.76977 * 8 7 6 10 10 S 1.70936 * 110.33852 * 359.75459 * 8 7 6 11 11 N 1.31525 * 106.97385 * 179.97438 * 4 3 2 12 12 N 1.28500 * 109.93796 * 0.02562 * 11 4 3 13 13 C 1.31211 * 110.18344 * 359.97438 * 12 11 4 14 14 N 1.38586 * 126.35235 * 179.97438 * 13 12 11 15 15 C 1.46898 * 110.99883 * 233.00940 * 14 13 12 16 16 C 1.46899 * 110.99971 * 356.96366 * 14 13 12 17 17 H 1.08995 * 109.47257 * 55.00035 * 16 14 13 18 18 C 1.53002 * 109.46949 * 294.99817 * 16 14 13 19 19 C 1.50703 * 109.46707 * 175.00106 * 16 14 13 20 20 H 1.07999 * 120.00590 * 4.36017 * 19 16 14 21 21 C 1.37881 * 119.99466 * 184.36027 * 19 16 14 22 22 N 1.31506 * 120.00618 * 5.94983 * 21 19 16 23 23 Si 1.86803 * 119.99578 * 185.94751 * 21 19 16 24 24 H 1.48496 * 109.47134 * 94.99634 * 23 21 19 25 25 H 1.48497 * 109.47021 * 214.99594 * 23 21 19 26 26 H 1.48503 * 109.47212 * 334.99607 * 23 21 19 27 27 H 1.08994 * 109.47552 * 182.79422 * 1 2 3 28 28 H 1.09005 * 109.46842 * 302.79707 * 1 2 3 29 29 H 1.08996 * 109.47005 * 62.79309 * 1 2 3 30 30 H 1.09004 * 109.47090 * 240.00072 * 2 1 3 31 31 H 1.09007 * 109.47083 * 120.00329 * 2 1 3 32 32 H 1.07997 * 122.87060 * 0.03541 * 6 5 4 33 33 H 0.96998 * 120.00495 * 179.97438 * 9 8 7 34 34 H 0.97001 * 120.00067 * 359.97438 * 9 8 7 35 35 H 1.09004 * 109.47514 * 50.88977 * 15 14 13 36 36 H 1.08997 * 109.47320 * 170.89028 * 15 14 13 37 37 H 1.09007 * 109.46999 * 290.89268 * 15 14 13 38 38 H 1.08994 * 109.47298 * 304.41482 * 18 16 14 39 39 H 1.08992 * 109.47013 * 64.41932 * 18 16 14 40 40 H 1.09006 * 109.46629 * 184.41719 * 18 16 14 41 41 H 0.96998 * 120.00495 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1714 2.2100 1.0890 5 6 1.8779 1.8759 2.4915 6 6 1.7667 2.7551 3.5116 7 7 1.4950 2.2024 4.6745 8 6 1.3786 0.9092 4.7015 9 7 1.1009 0.1642 5.8340 10 16 1.6167 0.2584 3.1390 11 7 2.6350 3.3551 0.6379 12 7 2.7787 3.2977 -0.6378 13 6 2.4179 2.1167 -1.0813 14 7 2.4373 1.6936 -2.4008 15 6 1.1292 1.1586 -2.8014 16 6 2.8584 2.7798 -3.2957 17 1 3.8210 3.1701 -2.9656 18 6 1.8160 3.8994 -3.2643 19 6 2.9859 2.2515 -4.7014 20 1 2.7079 1.2315 -4.9223 21 6 3.4575 3.0704 -5.7054 22 7 3.9057 4.2727 -5.4174 23 14 3.4598 2.4719 -7.4749 24 1 2.2267 2.9398 -8.1573 25 1 4.6505 3.0123 -8.1787 26 1 3.5040 0.9876 -7.4955 27 1 -0.3634 -1.0264 0.0501 28 1 -0.3633 0.5567 0.8639 29 1 -0.3633 0.4698 -0.9139 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8873 3.8205 3.3829 33 1 1.0287 -0.8012 5.7739 34 1 0.9783 0.6073 6.6881 35 1 0.3492 1.8751 -2.5437 36 1 1.1218 0.9847 -3.8774 37 1 0.9459 0.2189 -2.2802 38 1 0.8376 3.4922 -3.5188 39 1 1.7800 4.3343 -2.2655 40 1 2.0881 4.6694 -3.9863 41 1 4.2372 4.8489 -6.1238 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650299514.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:04 Heat of formation + Delta-G solvation = 151.286681 kcal Electronic energy + Delta-G solvation = -25294.541053 eV Core-core repulsion = 21759.804932 eV Total energy + Delta-G solvation = -3534.736121 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.127 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.42159 -39.72358 -37.41735 -35.67567 -35.02053 -32.82770 -31.08340 -30.53057 -28.86728 -27.93055 -25.45080 -25.19092 -24.74644 -23.98410 -22.36994 -21.37552 -20.01113 -19.34357 -18.88877 -17.11295 -16.55217 -16.33705 -15.96704 -15.73235 -15.32010 -15.04173 -14.86195 -14.70876 -14.50917 -13.71061 -13.60211 -13.22524 -13.16278 -12.45772 -12.41599 -11.85214 -11.66191 -11.50043 -11.37110 -11.28037 -11.11492 -10.93673 -10.80938 -10.61150 -10.26569 -10.10295 -9.93196 -9.82433 -9.77069 -9.68305 -9.12769 -8.94858 -8.42372 -8.14182 -7.17830 -6.07210 -4.12457 0.51742 0.75696 1.40708 2.23820 2.52222 2.89924 3.10049 3.27655 3.35084 3.37090 3.48725 4.30013 4.45113 4.53637 4.53846 4.70633 4.82843 5.04481 5.22293 5.26611 5.41138 5.43028 5.57135 5.75864 5.89786 5.92348 5.98192 6.13855 6.26593 6.43232 6.50596 6.71951 6.81378 6.89108 7.01040 7.11508 7.39438 7.55573 7.71421 7.73933 7.94326 8.15003 8.39686 8.88778 9.29261 9.51279 11.01298 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.032005 B = 0.003148 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.643899 B = 8892.524820 C = 9463.475229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.106 3.894 3 N -0.491 5.491 4 C 0.223 3.777 5 C -0.180 4.180 6 C 0.128 3.872 7 N -0.544 5.544 8 C 0.308 3.692 9 N -0.817 5.817 10 S 0.118 5.882 11 N -0.260 5.260 12 N -0.310 5.310 13 C 0.398 3.602 14 N -0.447 5.447 15 C 0.023 3.977 16 C 0.226 3.774 17 H 0.063 0.937 18 C -0.167 4.167 19 C -0.518 4.518 20 H 0.065 0.935 21 C 0.066 3.934 22 N -0.881 5.881 23 Si 0.897 3.103 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.273 1.273 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.082 0.918 32 H 0.188 0.812 33 H 0.414 0.586 34 H 0.412 0.588 35 H 0.032 0.968 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.022 0.978 39 H 0.039 0.961 40 H 0.079 0.921 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.872 -12.869 18.475 24.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.018 4.018 3 N -0.189 5.189 4 C -0.043 4.043 5 C -0.305 4.305 6 C -0.027 4.027 7 N -0.268 5.268 8 C -0.064 4.064 9 N -0.369 5.369 10 S 0.365 5.635 11 N -0.102 5.102 12 N -0.156 5.156 13 C 0.043 3.957 14 N -0.170 5.170 15 C -0.124 4.124 16 C 0.122 3.878 17 H 0.081 0.919 18 C -0.226 4.226 19 C -0.556 4.556 20 H 0.083 0.917 21 C -0.137 4.137 22 N -0.519 5.519 23 Si 0.725 3.275 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.198 1.198 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.126 0.874 31 H 0.100 0.900 32 H 0.205 0.795 33 H 0.245 0.755 34 H 0.244 0.756 35 H 0.051 0.949 36 H 0.118 0.882 37 H 0.074 0.926 38 H 0.041 0.959 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.004 -12.386 18.340 23.534 hybrid contribution -0.821 -0.445 -0.706 1.170 sum -8.825 -12.831 17.634 23.526 Atomic orbital electron populations 1.22338 0.93846 1.03380 1.03805 1.21900 0.95829 0.79768 1.04258 1.46332 1.52861 1.13384 1.06357 1.20821 1.07783 0.89536 0.86136 1.22133 1.20507 0.94094 0.93760 1.21685 0.95767 1.01322 0.83877 1.66367 1.25743 1.06965 1.27757 1.23737 0.97893 0.91578 0.93228 1.41475 1.79605 1.08697 1.07073 1.83767 1.71277 1.08324 1.00143 1.74430 1.14705 1.17062 1.03984 1.74804 1.25039 1.13794 1.01946 1.23325 0.96788 0.86878 0.88672 1.59298 1.26046 1.36205 0.95425 1.22675 0.87809 0.97804 1.04128 1.19439 0.95517 0.83692 0.89115 0.91924 1.22352 0.97731 1.01713 1.00830 1.21010 1.44800 0.98378 0.91461 0.91736 1.24895 0.94733 0.95005 0.99107 1.69971 1.40627 1.08408 1.32866 0.86499 0.77584 0.78920 0.84496 1.20716 1.21155 1.19815 0.90193 0.91754 0.90987 0.87405 0.89959 0.79529 0.75525 0.75603 0.94932 0.88170 0.92565 0.95872 0.94207 0.90198 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 9.80 37.16 0.36 -1.39 16 2 C 0.11 1.28 5.35 -4.04 -0.02 1.26 16 3 N -0.49 -8.29 2.84 -114.74 -0.33 -8.62 16 4 C 0.22 3.90 7.89 -153.74 -1.21 2.69 16 5 C -0.18 -2.52 6.43 -37.08 -0.24 -2.76 16 6 C 0.13 1.73 11.29 -18.76 -0.21 1.52 16 7 N -0.54 -6.78 10.57 -14.94 -0.16 -6.93 16 8 C 0.31 3.02 8.55 -87.77 -0.75 2.27 16 9 N -0.82 -4.55 9.07 29.75 0.27 -4.28 16 10 S 0.12 1.16 20.32 -107.50 -2.18 -1.02 16 11 N -0.26 -5.46 12.22 32.49 0.40 -5.07 16 12 N -0.31 -7.21 9.38 30.37 0.29 -6.93 16 13 C 0.40 8.33 6.75 -318.48 -2.15 6.18 16 14 N -0.45 -9.61 4.77 -175.99 -0.84 -10.45 16 15 C 0.02 0.41 7.29 60.06 0.44 0.84 16 16 C 0.23 5.75 1.91 -68.86 -0.13 5.61 16 17 H 0.06 1.84 7.90 -51.93 -0.41 1.43 16 18 C -0.17 -4.15 8.44 37.16 0.31 -3.84 16 19 C -0.52 -13.68 7.80 -34.44 -0.27 -13.95 16 20 H 0.06 1.65 6.69 -52.49 -0.35 1.30 16 21 C 0.07 1.78 5.22 -17.82 -0.09 1.69 16 22 N -0.88 -25.15 11.91 55.43 0.66 -24.49 16 23 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.80 6.08 -51.93 -0.32 0.49 16 30 H 0.11 1.29 6.69 -51.93 -0.35 0.94 16 31 H 0.08 0.85 5.70 -51.84 -0.30 0.55 16 32 H 0.19 2.43 8.06 -52.49 -0.42 2.01 16 33 H 0.41 1.13 8.95 -40.82 -0.37 0.76 16 34 H 0.41 1.83 8.95 -40.82 -0.37 1.47 16 35 H 0.03 0.58 6.74 -51.93 -0.35 0.23 16 36 H 0.10 1.86 6.15 -51.93 -0.32 1.54 16 37 H 0.06 0.79 4.32 -51.92 -0.22 0.56 16 38 H 0.02 0.52 6.45 -51.93 -0.34 0.19 16 39 H 0.04 0.98 6.08 -51.93 -0.32 0.67 16 40 H 0.08 2.17 6.57 -51.93 -0.34 1.83 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 338.59 15.07 5.10 5.10 Total: -1.00 -33.22 338.59 -10.52 -43.73 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -4.74 Total: 3.14 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -3.96 Total: 0.13 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: 0.29 Total: -66.77 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.18 Total: -1.02 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.22 -10.52 -43.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650299514.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.021 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds