Wall clock time and date at job start Tue Mar 31 2020 12:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47556 * 2 1 4 4 C 1.37705 * 127.19440 * 91.79906 * 3 2 1 5 5 C 1.47134 * 126.51398 * 359.72371 * 4 3 2 6 6 C 1.35109 * 126.03675 * 164.71525 * 5 4 3 7 7 N 1.31597 * 114.25382 * 179.78800 * 6 5 4 8 8 C 1.29859 * 117.07784 * 0.52164 * 7 6 5 9 9 N 1.38383 * 124.83191 * 179.75003 * 8 7 6 10 10 S 1.70938 * 110.33777 * 359.70678 * 8 7 6 11 11 N 1.31515 * 106.97456 * 179.74025 * 4 3 2 12 12 N 1.28498 * 109.94274 * 0.02562 * 11 4 3 13 13 C 1.31203 * 110.18383 * 359.97438 * 12 11 4 14 14 N 1.38583 * 126.35966 * 180.02562 * 13 12 11 15 15 C 1.46902 * 110.99515 * 302.37619 * 14 13 12 16 16 C 1.46906 * 111.00074 * 66.32833 * 14 13 12 17 17 H 1.09005 * 109.46713 * 300.00392 * 16 14 13 18 18 C 1.52995 * 109.46767 * 60.00137 * 16 14 13 19 19 C 1.50700 * 109.46883 * 180.02562 * 16 14 13 20 20 H 1.07998 * 119.99944 * 359.97438 * 19 16 14 21 21 C 1.37879 * 119.99578 * 180.02562 * 19 16 14 22 22 N 1.31512 * 120.00035 * 359.97438 * 21 19 16 23 23 Si 1.86792 * 119.99807 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.47402 * 90.00228 * 23 21 19 25 25 H 1.48503 * 109.47199 * 209.99775 * 23 21 19 26 26 H 1.48496 * 109.47449 * 329.99630 * 23 21 19 27 27 H 1.08997 * 109.47129 * 176.15037 * 1 2 3 28 28 H 1.08999 * 109.46799 * 296.14626 * 1 2 3 29 29 H 1.09004 * 109.47038 * 56.14535 * 1 2 3 30 30 H 1.09003 * 109.47049 * 240.00273 * 2 1 3 31 31 H 1.09002 * 109.47233 * 120.00297 * 2 1 3 32 32 H 1.08004 * 122.87375 * 359.97438 * 6 5 4 33 33 H 0.96996 * 120.00001 * 179.97438 * 9 8 7 34 34 H 0.96997 * 119.99684 * 359.95822 * 9 8 7 35 35 H 1.09002 * 109.47257 * 65.78351 * 15 14 13 36 36 H 1.09007 * 109.46557 * 185.77453 * 15 14 13 37 37 H 1.08990 * 109.47247 * 305.77361 * 15 14 13 38 38 H 1.09003 * 109.47430 * 299.99986 * 18 16 14 39 39 H 1.09000 * 109.47460 * 60.00182 * 18 16 14 40 40 H 1.09002 * 109.46959 * 179.97438 * 18 16 14 41 41 H 0.97003 * 120.00515 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3284 2.1545 1.0964 5 6 2.2273 1.7525 2.5081 6 6 2.7925 2.3879 3.5580 7 7 2.5478 1.8287 4.7238 8 6 1.8191 0.7538 4.7226 9 7 1.4683 0.0354 5.8521 10 16 1.3539 0.3533 3.1272 11 7 2.7318 3.3208 0.6419 12 7 2.6945 3.3274 -0.6425 13 6 2.2671 2.1701 -1.0889 14 7 2.0990 1.8132 -2.4174 15 6 1.1765 2.7326 -3.0968 16 6 3.3911 1.7536 -3.1141 17 1 3.8714 2.7312 -3.0728 18 6 4.2881 0.7156 -2.4369 19 6 3.1685 1.3640 -4.5527 20 1 2.1675 1.1788 -4.9133 21 6 4.2430 1.2431 -5.4083 22 7 5.4619 1.4682 -4.9689 23 14 3.9672 0.7595 -7.1913 24 1 3.7699 1.9820 -8.0110 25 1 5.1507 0.0145 -7.6909 26 1 2.7621 -0.1024 -7.2898 27 1 -0.3633 -1.0253 -0.0690 28 1 -0.3633 0.4529 0.9225 29 1 -0.3633 0.5725 -0.8535 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.3914 3.2802 3.4500 33 1 0.9189 -0.7597 5.7699 34 1 1.7720 0.3270 6.7260 35 1 1.6234 3.7257 -3.1454 36 1 0.9823 2.3718 -4.1069 37 1 0.2394 2.7825 -2.5424 38 1 4.4490 0.9977 -1.3964 39 1 3.8077 -0.2620 -2.4781 40 1 5.2466 0.6710 -2.9541 41 1 6.2179 1.3835 -5.5709 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650299516.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:07 Heat of formation + Delta-G solvation = 142.593961 kcal Electronic energy + Delta-G solvation = -25295.042378 eV Core-core repulsion = 21759.929313 eV Total energy + Delta-G solvation = -3535.113066 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.127 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.40579 -39.73666 -37.04669 -35.50150 -35.00393 -32.96678 -31.13379 -30.30941 -29.37684 -27.75645 -25.57776 -24.95051 -24.42979 -23.84695 -22.37817 -21.42367 -20.05680 -19.33085 -18.87934 -17.03020 -16.53955 -16.28448 -16.26981 -15.66956 -15.25409 -14.98159 -14.84419 -14.57336 -14.39746 -13.72953 -13.43316 -13.18365 -13.01822 -12.39711 -12.23490 -11.89851 -11.74938 -11.53389 -11.29657 -11.15898 -11.14108 -10.94755 -10.82616 -10.39797 -10.32032 -10.13828 -10.08611 -9.91562 -9.79112 -9.60580 -9.12041 -8.83149 -8.54532 -7.76832 -7.65520 -6.10028 -4.16885 0.49956 0.76407 1.39599 2.19928 2.56318 2.86668 3.09339 3.26421 3.33271 3.35490 3.42071 4.30238 4.45077 4.58737 4.68044 4.69371 4.98129 5.19524 5.23298 5.26976 5.53556 5.64948 5.73998 5.89137 5.96359 6.04092 6.13137 6.33830 6.40914 6.49964 6.60470 6.69530 6.80684 6.86546 6.90113 7.08392 7.34043 7.61590 7.71012 7.72755 7.87464 8.14582 8.41462 8.86811 9.16063 9.48179 10.96948 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.026149 B = 0.003256 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.522469 B = 8596.459321 C = 8776.604933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 N -0.467 5.467 4 C 0.235 3.765 5 C -0.188 4.188 6 C 0.134 3.866 7 N -0.545 5.545 8 C 0.308 3.692 9 N -0.816 5.816 10 S 0.128 5.872 11 N -0.269 5.269 12 N -0.315 5.315 13 C 0.394 3.606 14 N -0.473 5.473 15 C 0.052 3.948 16 C 0.224 3.776 17 H 0.021 0.979 18 C -0.132 4.132 19 C -0.511 4.511 20 H 0.067 0.933 21 C 0.063 3.937 22 N -0.888 5.888 23 Si 0.901 3.099 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.188 0.812 33 H 0.415 0.585 34 H 0.412 0.588 35 H 0.037 0.963 36 H 0.089 0.911 37 H 0.043 0.957 38 H 0.001 0.999 39 H 0.032 0.968 40 H 0.093 0.907 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.771 -6.969 17.840 21.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.018 4.018 3 N -0.161 5.161 4 C -0.030 4.030 5 C -0.314 4.314 6 C -0.021 4.021 7 N -0.270 5.270 8 C -0.064 4.064 9 N -0.368 5.368 10 S 0.375 5.625 11 N -0.112 5.112 12 N -0.159 5.159 13 C 0.039 3.961 14 N -0.200 5.200 15 C -0.096 4.096 16 C 0.120 3.880 17 H 0.039 0.961 18 C -0.190 4.190 19 C -0.550 4.550 20 H 0.085 0.915 21 C -0.140 4.140 22 N -0.526 5.526 23 Si 0.729 3.271 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.198 1.198 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.129 0.871 31 H 0.102 0.898 32 H 0.205 0.795 33 H 0.245 0.755 34 H 0.244 0.756 35 H 0.056 0.944 36 H 0.108 0.892 37 H 0.062 0.938 38 H 0.020 0.980 39 H 0.051 0.949 40 H 0.111 0.889 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.678 -6.644 17.784 21.782 hybrid contribution 0.278 -0.424 -0.660 0.833 sum -10.400 -7.068 17.124 21.245 Atomic orbital electron populations 1.22152 0.93846 1.03371 1.02976 1.21888 0.95784 0.79379 1.04767 1.46542 1.50243 1.13471 1.05854 1.20935 1.06125 0.90007 0.85961 1.22145 1.12976 1.03136 0.93125 1.21701 0.97279 0.99606 0.83537 1.66377 1.21509 1.10553 1.28513 1.23756 0.96155 0.93256 0.93216 1.41488 1.59175 1.30637 1.05450 1.83884 1.52877 1.27552 0.98197 1.74410 1.17610 1.15599 1.03603 1.74632 1.19942 1.18857 1.02484 1.22778 0.97530 0.86289 0.89518 1.59284 1.17558 1.48938 0.94216 1.22189 0.93408 0.94451 0.99540 1.19454 0.80774 0.95769 0.91992 0.96143 1.21833 1.03123 0.98181 0.95868 1.21037 0.93740 1.47563 0.92649 0.91471 1.24918 0.94981 0.95130 0.98938 1.69894 0.98343 1.48846 1.35531 0.86448 0.77735 0.78593 0.84347 1.20585 1.21217 1.19792 0.90238 0.92419 0.91004 0.87115 0.89773 0.79494 0.75471 0.75575 0.94394 0.89203 0.93777 0.97986 0.94854 0.88870 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.10 37.16 0.38 -1.45 16 2 C 0.11 1.43 6.18 -4.04 -0.02 1.41 16 3 N -0.47 -8.24 2.84 -114.74 -0.33 -8.57 16 4 C 0.24 4.19 7.89 -153.75 -1.21 2.98 16 5 C -0.19 -2.70 6.40 -37.09 -0.24 -2.94 16 6 C 0.13 1.83 11.29 -18.77 -0.21 1.62 16 7 N -0.54 -6.87 10.57 -14.93 -0.16 -7.02 16 8 C 0.31 3.08 8.55 -87.76 -0.75 2.33 16 9 N -0.82 -4.65 9.07 29.75 0.27 -4.38 16 10 S 0.13 1.29 19.49 -107.50 -2.09 -0.80 16 11 N -0.27 -5.61 12.22 32.49 0.40 -5.21 16 12 N -0.32 -7.18 12.13 30.37 0.37 -6.81 16 13 C 0.39 8.27 5.05 -318.48 -1.61 6.66 16 14 N -0.47 -10.20 4.66 -175.99 -0.82 -11.02 16 15 C 0.05 1.02 9.09 60.07 0.55 1.56 16 16 C 0.22 5.65 2.02 -68.86 -0.14 5.51 16 17 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 18 C -0.13 -3.25 8.84 37.15 0.33 -2.92 16 19 C -0.51 -13.39 7.95 -34.44 -0.27 -13.66 16 20 H 0.07 1.70 6.40 -52.49 -0.34 1.37 16 21 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 22 N -0.89 -24.92 11.32 55.43 0.63 -24.29 16 23 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 25 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.61 7.26 -51.93 -0.38 0.23 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 31 H 0.08 0.98 6.03 -51.93 -0.31 0.67 16 32 H 0.19 2.45 8.06 -52.48 -0.42 2.02 16 33 H 0.41 1.19 8.95 -40.82 -0.37 0.82 16 34 H 0.41 1.88 8.95 -40.82 -0.37 1.51 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 1.74 6.30 -51.92 -0.33 1.41 16 37 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 38 H 0.00 0.03 7.22 -51.93 -0.38 -0.35 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 352.32 15.07 5.31 5.31 Total: -1.00 -32.60 352.32 -10.04 -42.64 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -5.29 Total: 1.92 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -3.30 Total: 2.68 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: 0.36 Total: -67.31 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.09 Total: -0.80 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.60 -10.04 -42.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650299516.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.230 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds