Wall clock time and date at job start Tue Mar 31 2020 12:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47556 * 2 1 4 4 C 1.37705 * 127.19440 * 91.79906 * 3 2 1 5 5 C 1.47134 * 126.51398 * 359.72371 * 4 3 2 6 6 C 1.35109 * 126.03675 * 164.71525 * 5 4 3 7 7 N 1.31597 * 114.25382 * 179.78800 * 6 5 4 8 8 C 1.29859 * 117.07784 * 0.52164 * 7 6 5 9 9 N 1.38383 * 124.83191 * 179.75003 * 8 7 6 10 10 S 1.70938 * 110.33777 * 359.70678 * 8 7 6 11 11 N 1.31515 * 106.97456 * 179.74025 * 4 3 2 12 12 N 1.28498 * 109.94274 * 0.02562 * 11 4 3 13 13 C 1.31203 * 110.18383 * 359.97438 * 12 11 4 14 14 N 1.38583 * 126.35966 * 180.02562 * 13 12 11 15 15 C 1.46902 * 110.99515 * 302.37619 * 14 13 12 16 16 C 1.46906 * 111.00074 * 66.32833 * 14 13 12 17 17 H 1.09005 * 109.46713 * 300.00392 * 16 14 13 18 18 C 1.52995 * 109.46767 * 60.00137 * 16 14 13 19 19 C 1.50700 * 109.46883 * 180.02562 * 16 14 13 20 20 H 1.07998 * 119.99944 * 359.97438 * 19 16 14 21 21 C 1.37879 * 119.99578 * 180.02562 * 19 16 14 22 22 N 1.31512 * 120.00035 * 359.97438 * 21 19 16 23 23 Si 1.86792 * 119.99807 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.47402 * 90.00228 * 23 21 19 25 25 H 1.48503 * 109.47199 * 209.99775 * 23 21 19 26 26 H 1.48496 * 109.47449 * 329.99630 * 23 21 19 27 27 H 1.08997 * 109.47129 * 176.15037 * 1 2 3 28 28 H 1.08999 * 109.46799 * 296.14626 * 1 2 3 29 29 H 1.09004 * 109.47038 * 56.14535 * 1 2 3 30 30 H 1.09003 * 109.47049 * 240.00273 * 2 1 3 31 31 H 1.09002 * 109.47233 * 120.00297 * 2 1 3 32 32 H 1.08004 * 122.87375 * 359.97438 * 6 5 4 33 33 H 0.96996 * 120.00001 * 179.97438 * 9 8 7 34 34 H 0.96997 * 119.99684 * 359.95822 * 9 8 7 35 35 H 1.09002 * 109.47257 * 65.78351 * 15 14 13 36 36 H 1.09007 * 109.46557 * 185.77453 * 15 14 13 37 37 H 1.08990 * 109.47247 * 305.77361 * 15 14 13 38 38 H 1.09003 * 109.47430 * 299.99986 * 18 16 14 39 39 H 1.09000 * 109.47460 * 60.00182 * 18 16 14 40 40 H 1.09002 * 109.46959 * 179.97438 * 18 16 14 41 41 H 0.97003 * 120.00515 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3284 2.1545 1.0964 5 6 2.2273 1.7525 2.5081 6 6 2.7925 2.3879 3.5580 7 7 2.5478 1.8287 4.7238 8 6 1.8191 0.7538 4.7226 9 7 1.4683 0.0354 5.8521 10 16 1.3539 0.3533 3.1272 11 7 2.7318 3.3208 0.6419 12 7 2.6945 3.3274 -0.6425 13 6 2.2671 2.1701 -1.0889 14 7 2.0990 1.8132 -2.4174 15 6 1.1765 2.7326 -3.0968 16 6 3.3911 1.7536 -3.1141 17 1 3.8714 2.7312 -3.0728 18 6 4.2881 0.7156 -2.4369 19 6 3.1685 1.3640 -4.5527 20 1 2.1675 1.1788 -4.9133 21 6 4.2430 1.2431 -5.4083 22 7 5.4619 1.4682 -4.9689 23 14 3.9672 0.7595 -7.1913 24 1 3.7699 1.9820 -8.0110 25 1 5.1507 0.0145 -7.6909 26 1 2.7621 -0.1024 -7.2898 27 1 -0.3633 -1.0253 -0.0690 28 1 -0.3633 0.4529 0.9225 29 1 -0.3633 0.5725 -0.8535 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.3914 3.2802 3.4500 33 1 0.9189 -0.7597 5.7699 34 1 1.7720 0.3270 6.7260 35 1 1.6234 3.7257 -3.1454 36 1 0.9823 2.3718 -4.1069 37 1 0.2394 2.7825 -2.5424 38 1 4.4490 0.9977 -1.3964 39 1 3.8077 -0.2620 -2.4781 40 1 5.2466 0.6710 -2.9541 41 1 6.2179 1.3835 -5.5709 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650299516.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:06 Heat of formation + Delta-G solvation = 120.806017 kcal Electronic energy + Delta-G solvation = -25295.987174 eV Core-core repulsion = 21759.929313 eV Total energy + Delta-G solvation = -3536.057862 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.127 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.87644 -40.67090 -38.80168 -36.73920 -35.81052 -34.90573 -32.38316 -31.55204 -31.23370 -29.07665 -27.44410 -26.18250 -25.90968 -25.02187 -23.74225 -22.97160 -21.32786 -20.69548 -19.76854 -18.52670 -18.22243 -17.51520 -17.31484 -16.97321 -16.77585 -16.25204 -16.00709 -15.83944 -15.44987 -15.43374 -15.03115 -14.38188 -14.27568 -14.07351 -13.68899 -13.28695 -13.03978 -12.88379 -12.74849 -12.70881 -12.49321 -12.46940 -12.28400 -12.23180 -12.15382 -12.02338 -11.60792 -11.17356 -11.07607 -10.76874 -10.65935 -10.57604 -9.94137 -9.56007 -8.73279 -8.14043 -6.28449 -0.50278 -0.10129 0.44757 0.87300 1.22459 1.47220 1.47656 1.58473 1.65667 2.08115 2.40285 2.42845 2.97711 3.17728 3.29359 3.55457 3.83608 3.99267 4.06865 4.12685 4.27941 4.43569 4.59155 4.62843 4.70370 4.72714 4.78804 4.84140 4.93202 4.99591 5.03530 5.08112 5.17803 5.34959 5.51309 5.63076 5.83467 5.89936 5.95300 6.13417 6.25825 6.58994 6.82241 6.95356 7.40971 7.66122 8.93248 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.026149 B = 0.003256 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.522469 B = 8596.459321 C = 8776.604933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.096 3.904 3 N -0.463 5.463 4 C 0.261 3.739 5 C -0.242 4.242 6 C 0.149 3.851 7 N -0.572 5.572 8 C 0.316 3.684 9 N -0.788 5.788 10 S 0.192 5.808 11 N -0.312 5.312 12 N -0.355 5.355 13 C 0.373 3.627 14 N -0.462 5.462 15 C 0.055 3.945 16 C 0.234 3.766 17 H -0.031 1.031 18 C -0.113 4.113 19 C -0.520 4.520 20 H 0.076 0.924 21 C 0.013 3.987 22 N -0.923 5.923 23 Si 0.970 3.030 24 H -0.278 1.278 25 H -0.286 1.286 26 H -0.259 1.259 27 H 0.114 0.886 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.181 0.819 33 H 0.432 0.568 34 H 0.422 0.578 35 H 0.016 0.984 36 H 0.093 0.907 37 H 0.069 0.931 38 H -0.003 1.003 39 H 0.045 0.955 40 H 0.067 0.933 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.045 -9.754 19.458 25.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.026 4.026 3 N -0.156 5.156 4 C -0.006 4.006 5 C -0.368 4.368 6 C -0.008 4.008 7 N -0.298 5.298 8 C -0.057 4.057 9 N -0.341 5.341 10 S 0.440 5.560 11 N -0.154 5.154 12 N -0.199 5.199 13 C 0.016 3.984 14 N -0.188 5.188 15 C -0.092 4.092 16 C 0.128 3.872 17 H -0.013 1.013 18 C -0.171 4.171 19 C -0.558 4.558 20 H 0.094 0.906 21 C -0.186 4.186 22 N -0.562 5.562 23 Si 0.795 3.205 24 H -0.204 1.204 25 H -0.212 1.212 26 H -0.183 1.183 27 H 0.132 0.868 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.198 0.802 33 H 0.266 0.734 34 H 0.256 0.744 35 H 0.035 0.965 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.016 0.984 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.011 -9.488 19.460 25.259 hybrid contribution 0.943 0.369 -0.832 1.311 sum -12.069 -9.119 18.628 23.996 Atomic orbital electron populations 1.22142 0.91489 1.05357 1.02552 1.22259 0.97723 0.77247 1.05363 1.46708 1.49753 1.14483 1.04680 1.21446 1.02816 0.88913 0.87381 1.22179 1.16699 1.06546 0.91373 1.21730 0.96045 0.99055 0.83993 1.66448 1.23467 1.12076 1.27846 1.24089 0.94432 0.92492 0.94638 1.41624 1.57616 1.30116 1.04750 1.83494 1.51323 1.24450 0.96780 1.74301 1.20402 1.17813 1.02862 1.74490 1.21025 1.20526 1.03812 1.22638 0.99205 0.86869 0.89655 1.59213 1.15725 1.49292 0.94616 1.22201 0.93897 0.93040 1.00079 1.19129 0.82300 0.93092 0.92639 1.01326 1.21583 1.01835 0.98617 0.95069 1.21320 0.94183 1.47182 0.93155 0.90561 1.25788 0.94606 0.94999 1.03249 1.70051 0.99235 1.49865 1.37012 0.85372 0.77949 0.78306 0.78909 1.20382 1.21196 1.18315 0.86759 0.91682 0.92768 0.88164 0.87539 0.80203 0.73386 0.74406 0.96472 0.88846 0.91184 0.98375 0.93580 0.91412 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 10.10 71.98 0.73 -2.32 16 2 C 0.10 2.44 6.18 86.38 0.53 2.98 16 3 N -0.46 -16.33 2.84 -516.94 -1.47 -17.80 16 4 C 0.26 9.41 7.89 135.89 1.07 10.48 16 5 C -0.24 -6.70 6.40 23.89 0.15 -6.54 16 6 C 0.15 3.99 11.29 84.01 0.95 4.94 16 7 N -0.57 -13.30 10.57 -201.16 -2.13 -15.42 16 8 C 0.32 5.27 8.55 179.35 1.53 6.80 16 9 N -0.79 -5.66 9.07 -59.80 -0.54 -6.20 16 10 S 0.19 3.26 19.49 -56.49 -1.10 2.16 16 11 N -0.31 -13.59 12.22 -51.13 -0.62 -14.22 16 12 N -0.35 -17.06 12.13 -57.83 -0.70 -17.76 16 13 C 0.37 16.17 5.05 259.97 1.31 17.48 16 14 N -0.46 -20.45 4.66 -710.70 -3.31 -23.76 16 15 C 0.06 2.22 9.09 127.69 1.16 3.38 16 16 C 0.23 12.27 2.02 44.17 0.09 12.36 16 17 H -0.03 -1.92 8.14 -2.38 -0.02 -1.93 16 18 C -0.11 -5.74 8.84 71.98 0.64 -5.11 16 19 C -0.52 -27.63 7.95 25.60 0.20 -27.42 16 20 H 0.08 3.84 6.40 -2.91 -0.02 3.82 16 21 C 0.01 0.69 5.30 84.66 0.45 1.14 16 22 N -0.92 -53.32 11.32 21.45 0.24 -53.07 16 23 Si 0.97 42.25 29.54 68.60 2.03 44.28 16 24 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 27 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.06 1.16 7.26 -2.39 -0.02 1.14 16 29 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.11 2.19 6.03 -2.39 -0.01 2.18 16 32 H 0.18 4.86 8.06 -2.91 -0.02 4.84 16 33 H 0.43 0.37 8.95 -92.71 -0.83 -0.46 16 34 H 0.42 2.11 8.95 -92.71 -0.83 1.28 16 35 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.09 3.63 6.30 -2.38 -0.02 3.61 16 37 H 0.07 2.41 8.10 -2.39 -0.02 2.39 16 38 H 0.00 -0.14 7.22 -2.39 -0.02 -0.16 16 39 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 41 H 0.26 14.46 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -74.67 352.32 0.65 -74.02 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -0.57 Total: 9.62 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 8.82 Total: 18.15 kcal Atomic # 7 Polarization: -139.70 SS G_CDS: -8.53 Total: -148.24 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.10 Total: 2.16 kcal Total: -74.67 0.65 -74.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650299516.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.829 kcal (2) G-P(sol) polarization free energy of solvation -74.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds