Wall clock time and date at job start Tue Mar 31 2020 13:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86801 * 119.99727 * 2 1 4 4 H 1.48500 * 109.47078 * 269.99950 * 3 2 1 5 5 H 1.48497 * 109.47236 * 30.00323 * 3 2 1 6 6 H 1.48497 * 109.46795 * 150.00594 * 3 2 1 7 7 C 1.38651 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99923 * 359.97438 * 7 2 1 9 9 O 1.34829 * 120.00042 * 179.97438 * 7 2 1 10 10 C 1.35744 * 117.00210 * 185.05551 * 9 7 2 11 11 C 1.38881 * 120.07158 * 354.46358 * 10 9 7 12 12 C 1.38099 * 119.93237 * 180.02562 * 11 10 9 13 13 C 1.38296 * 120.07178 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.93300 * 179.97438 * 13 12 11 15 15 N 1.46898 * 109.47073 * 89.99702 * 14 13 12 16 16 C 1.46894 * 111.00061 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47425 * 180.02562 * 16 15 14 18 18 C 1.38833 * 119.66809 * 269.72906 * 17 16 15 19 19 C 1.36624 * 120.53206 * 179.73473 * 18 17 16 20 20 C 1.39636 * 119.76225 * 0.55818 * 19 18 17 21 21 C 1.46485 * 134.03627 * 179.73195 * 20 19 18 22 22 C 1.34238 * 106.99735 * 179.97438 * 21 20 19 23 23 N 1.36836 * 109.92881 * 359.97438 * 22 21 20 24 24 H 0.96997 * 125.05859 * 180.02562 * 23 22 21 25 25 C 1.37686 * 109.87166 * 359.97438 * 23 22 21 26 26 C 1.37746 * 119.66624 * 89.99935 * 17 16 15 27 27 C 1.38303 * 120.13466 * 0.25075 * 13 12 11 28 28 C 1.38102 * 120.07016 * 359.44733 * 27 13 12 29 29 H 0.96995 * 119.99851 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.02763 * 359.97438 * 11 10 9 31 31 H 1.07998 * 119.96282 * 179.97438 * 12 11 10 32 32 H 1.08994 * 109.47067 * 329.99940 * 14 13 12 33 33 H 1.08997 * 109.47043 * 209.99644 * 14 13 12 34 34 H 1.00906 * 110.99997 * 56.05082 * 15 14 13 35 35 H 1.09000 * 109.47310 * 300.00216 * 16 15 14 36 36 H 1.09005 * 109.46913 * 60.00429 * 16 15 14 37 37 H 1.08005 * 119.73353 * 0.02562 * 18 17 16 38 38 H 1.07992 * 120.11993 * 180.25085 * 19 18 17 39 39 H 1.07998 * 126.50164 * 0.02562 * 21 20 19 40 40 H 1.07999 * 125.03414 * 180.02562 * 22 21 20 41 41 H 1.07993 * 120.11020 * 0.02562 * 26 17 16 42 42 H 1.08001 * 119.96427 * 179.70622 * 27 13 12 43 43 H 1.07999 * 120.03168 * 180.27326 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4402 0.6999 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3571 -1.2008 -0.0011 10 6 3.9734 -2.4055 -0.1081 11 6 3.2235 -3.5744 -0.0951 12 6 3.8534 -4.7985 -0.2037 13 6 5.2296 -4.8614 -0.3248 14 6 5.9139 -6.1989 -0.4426 15 7 6.0176 -6.5728 -1.8594 16 6 6.6815 -7.8741 -2.0131 17 6 6.7701 -8.2231 -3.4765 18 6 5.7434 -8.9408 -4.0752 19 6 5.8030 -9.2621 -5.4018 20 6 6.9104 -8.8758 -6.1595 21 6 7.2955 -9.0502 -7.5620 22 6 8.4884 -8.4546 -7.7184 23 7 8.8983 -7.9126 -6.5307 24 1 9.7293 -7.4309 -6.3954 25 6 7.9550 -8.1518 -5.5567 26 6 7.8714 -7.8316 -4.2053 27 6 5.9797 -3.6994 -0.3324 28 6 5.3552 -2.4719 -0.2304 29 1 -0.4850 0.8400 0.0004 30 1 2.1488 -3.5260 0.0007 31 1 3.2708 -5.7078 -0.1932 32 1 5.3336 -6.9520 0.0904 33 1 6.9121 -6.1357 -0.0095 34 1 6.4959 -5.8586 -2.3878 35 1 7.6851 -7.8221 -1.5910 36 1 6.1068 -8.6391 -1.4910 37 1 4.8886 -9.2436 -3.4885 38 1 4.9988 -9.8171 -5.8616 39 1 6.7272 -9.5603 -8.3256 40 1 9.0420 -8.4092 -8.6446 41 1 8.6670 -7.2778 -3.7294 42 1 7.0547 -3.7519 -0.4223 43 1 5.9412 -1.5648 -0.2408 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656408685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:38 Heat of formation + Delta-G solvation = 38.867321 kcal Electronic energy + Delta-G solvation = -24540.621605 eV Core-core repulsion = 20936.814256 eV Total energy + Delta-G solvation = -3603.807349 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.04400 -40.89003 -39.00149 -38.28891 -36.16594 -34.45399 -33.05101 -31.84750 -31.66417 -30.28116 -29.75424 -27.58584 -26.18440 -24.46090 -23.67587 -23.56134 -21.94731 -21.64944 -21.42874 -19.79727 -19.09493 -18.87302 -17.24510 -16.76977 -16.71402 -16.19995 -15.87946 -15.78146 -15.70562 -15.54924 -15.17266 -15.09778 -14.85947 -14.66145 -14.32258 -14.28040 -14.08786 -13.93111 -13.57178 -13.13385 -12.89786 -12.74991 -12.60327 -12.38091 -12.34958 -12.28820 -12.13156 -11.87858 -11.67909 -11.26336 -10.90266 -10.62020 -9.78118 -9.33935 -9.05218 -8.94929 -8.57522 -8.49767 -6.22401 0.21056 0.59411 0.62990 0.74595 1.30821 1.35374 1.51663 1.85859 2.28042 2.31699 2.73675 2.92856 3.06737 3.17613 3.65791 3.84960 3.94485 4.06611 4.08320 4.09477 4.19852 4.30183 4.42087 4.51002 4.52781 4.60756 4.65643 4.72292 4.76119 4.86130 4.90176 4.94664 5.00700 5.13193 5.20787 5.27811 5.40074 5.57715 5.60861 5.74614 5.77379 5.84324 5.85839 5.87571 5.92406 6.12333 6.27389 6.29758 6.49678 6.76226 6.84457 7.59181 8.62009 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.017410 B = 0.002105 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.890948 B =13299.250215 C =13740.909603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.008 3.992 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.399 4.399 8 H 0.079 0.921 9 O -0.246 6.246 10 C 0.118 3.882 11 C -0.240 4.240 12 C -0.055 4.055 13 C -0.149 4.149 14 C 0.120 3.880 15 N -0.691 5.691 16 C 0.106 3.894 17 C -0.069 4.069 18 C -0.134 4.134 19 C -0.091 4.091 20 C -0.137 4.137 21 C -0.236 4.236 22 C 0.062 3.938 23 N -0.592 5.592 24 H 0.428 0.572 25 C 0.073 3.927 26 C -0.128 4.128 27 C -0.061 4.061 28 C -0.193 4.193 29 H 0.285 0.715 30 H 0.105 0.895 31 H 0.130 0.870 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.342 0.658 35 H 0.052 0.948 36 H 0.086 0.914 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.157 0.843 40 H 0.208 0.792 41 H 0.133 0.867 42 H 0.154 0.846 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.042 -19.446 -11.429 31.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.475 4.475 8 H 0.097 0.903 9 O -0.154 6.154 10 C 0.069 3.931 11 C -0.259 4.259 12 C -0.074 4.074 13 C -0.150 4.150 14 C -0.008 4.008 15 N -0.323 5.323 16 C -0.022 4.022 17 C -0.071 4.071 18 C -0.154 4.154 19 C -0.109 4.109 20 C -0.142 4.142 21 C -0.261 4.261 22 C -0.065 4.065 23 N -0.196 5.196 24 H 0.267 0.733 25 C -0.034 4.034 26 C -0.149 4.149 27 C -0.079 4.079 28 C -0.212 4.212 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.148 0.852 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.160 0.840 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.174 0.826 40 H 0.225 0.775 41 H 0.151 0.849 42 H 0.172 0.828 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 21.438 -19.328 -11.423 31.042 hybrid contribution 0.397 1.175 0.226 1.261 sum 21.835 -18.153 -11.196 30.523 Atomic orbital electron populations 1.69736 1.06922 1.29585 1.50259 1.25312 0.95921 1.02231 0.95575 0.85191 0.78779 0.77308 0.79255 1.19116 1.19126 1.18664 1.20703 0.78177 0.96082 1.52575 0.90317 1.83506 1.21163 1.27524 1.83160 1.19707 0.93331 0.85010 0.95017 1.21287 1.00087 0.93373 1.11162 1.20901 0.94878 0.95847 0.95754 1.19687 0.92949 0.95517 1.06827 1.20660 0.98810 0.92341 0.88944 1.60517 1.57340 1.04378 1.10051 1.20847 0.97951 0.91914 0.91467 1.19551 0.93700 0.98040 0.95800 1.20708 0.99111 1.00632 0.94926 1.20488 0.96890 0.99796 0.93747 1.19664 0.96027 1.03168 0.95365 1.22020 0.99056 1.10303 0.94724 1.22436 0.96647 0.97142 0.90254 1.41880 1.20042 1.50129 1.07566 0.73328 1.18423 0.91621 1.01926 0.91429 1.20072 1.00077 1.04182 0.90557 1.20968 1.00294 0.90072 0.96610 1.20509 0.90443 0.99858 1.10392 0.90583 0.87744 0.85214 0.89930 0.92707 0.83993 0.93036 0.89582 0.85435 0.85222 0.82579 0.77538 0.84892 0.82838 0.85391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.22 13.96 21.61 0.30 -55.91 16 2 C 0.01 0.46 5.49 84.83 0.47 0.92 16 3 Si 0.97 46.16 28.62 68.60 1.96 48.13 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.40 -24.07 9.95 67.92 0.68 -23.40 16 8 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16 9 O -0.25 -13.64 8.59 -22.66 -0.19 -13.84 16 10 C 0.12 5.65 6.65 22.58 0.15 5.80 16 11 C -0.24 -10.88 9.17 22.39 0.21 -10.67 16 12 C -0.06 -1.97 9.69 22.25 0.22 -1.76 16 13 C -0.15 -4.37 5.40 -19.84 -0.11 -4.48 16 14 C 0.12 2.54 5.81 85.56 0.50 3.04 16 15 N -0.69 -14.62 6.48 -522.00 -3.38 -18.01 16 16 C 0.11 1.81 5.79 85.56 0.50 2.31 16 17 C -0.07 -1.37 5.39 -19.84 -0.11 -1.47 16 18 C -0.13 -2.84 9.61 22.03 0.21 -2.63 16 19 C -0.09 -1.95 10.05 22.23 0.22 -1.72 16 20 C -0.14 -2.97 6.37 -20.20 -0.13 -3.10 16 21 C -0.24 -3.95 11.08 23.51 0.26 -3.69 16 22 C 0.06 0.73 11.82 83.00 0.98 1.71 16 23 N -0.59 -7.84 6.07 -187.61 -1.14 -8.98 16 24 H 0.43 3.01 8.96 -92.71 -0.83 2.17 16 25 C 0.07 1.44 7.28 39.03 0.28 1.72 16 26 C -0.13 -2.37 9.71 22.37 0.22 -2.16 16 27 C -0.06 -1.81 9.69 22.25 0.22 -1.59 16 28 C -0.19 -7.35 9.99 22.39 0.22 -7.13 16 29 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 30 H 0.10 5.25 5.64 -2.91 -0.02 5.24 16 31 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 32 H 0.08 1.66 8.08 -2.39 -0.02 1.64 16 33 H 0.05 0.94 8.08 -2.39 -0.02 0.92 16 34 H 0.34 7.34 8.71 -89.69 -0.78 6.56 16 35 H 0.05 0.72 8.08 -2.39 -0.02 0.70 16 36 H 0.09 1.39 8.08 -2.38 -0.02 1.37 16 37 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 38 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 39 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.21 0.63 8.06 -2.91 -0.02 0.60 16 41 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16 42 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 43 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -73.47 367.82 1.97 -71.50 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -0.56 Total: 25.42 kcal Atomic # 6 Polarization: -53.29 SS G_CDS: 4.98 Total: -48.31 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -4.22 Total: -82.90 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.19 Total: -13.84 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.96 Total: 48.13 kcal Total: -73.47 1.97 -71.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656408685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.372 kcal (2) G-P(sol) polarization free energy of solvation -73.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds